mRNA_H-elongata_contig59598.13471.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59598.13471.1
Unique NamemRNA_H-elongata_contig59598.13471.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59598.13471.1 vs. uniprot
Match: D7G4Q6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q6_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 5.650e-34
Identity = 189/346 (54.62%), Postives = 219/346 (63.29%), Query Frame = 1 
Query:    1 PRDPSVPAELQLFLEQHR----SPLPNLMEDRTGAEPPPS---RVDLQVGLIYEGQLRRRDG----LPHGWGRVTLPDGAAYEGEWLGGRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---PDGLGVFVDAGYGGERFEXXXXXGVRSGGGRVVQGWAEKEEK---GKTFGNVASASTRSWEETAWYSGNFKNGLPHGEGAMGFGLATFCGH-----------VERGEWTGGGGILDLGGGRGSFEGTFTDGLPSGSGRWCWEESGVEIDCSFEEGYSKNIW 954
            P  P +P  L LFLE HR    S LP+     + A    S   RV    GL YEGQL RR+G    +PHGWG +T PD   Y+G W GG VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 P G GVFVD   G ERF      G+RSG G +VQG  EKE++   G+  G  A     +  E AWYSGNF++GLPHG+G M +  ATFC             ++ GE +G           G FEG++ DG+P GSGRW +++SGV +DC+FE+GYS+ IW
Sbjct:   72 PPPPPIPLILHLFLENHRPRDVSALPSGGSRGSNAGDGSSSVHRVWFTGGLAYEGQLLRREGGEKRVPHGWGNLTFPDKGFYQGCWHGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGSHTRSYDGDWENDLPHGHGVFVDTAEG-ERFCGAWRHGIRSGAGTLVQGRLEKEKRQKGGEDTGEEAEREDEASSELAWYSGNFEHGLPHGDGTMTYCGATFCXXXXXXXXXXXXKIDFGEKSGFS--------SGVFEGSWIDGVPCGSGRWWYKQSGVALDCTFEQGYSRKIW 408
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BLAST of mRNA_H-elongata_contig59598.13471.1 vs. uniprot
Match: A0A077ZVK2_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZVK2_STYLE)

HSP 1 Score: 56.2 bits (134), Expect = 2.550e-5
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:  109 RVDLQVGLIYEGQLRRRDGLPHGWGRVTLPDGAAYEGEWLGGRV 240
            ++D++ GLIYEGQ+R++ G  HG+GR+  PDG+ +EG W  G+ 
Sbjct:   90 KIDIEGGLIYEGQVRKKTGERHGYGRLQWPDGSYFEGYWADGKA 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59598.13471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4Q6_ECTSI5.650e-3454.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A077ZVK2_STYLE2.550e-547.73Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59598contigH-elongata_contig59598:2009..2971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue7.6e-31
Seed eggNOG ortholog2880.D7G4Q6
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-20_000760.1
Exons1
Model size963
Cds size963
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.913171-CDS-H-elongata_contig59598:2008..29711622930964.913171-CDS-H-elongata_contig59598:2008..2971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59598 2009..2971 -
1691679643.055759-CDS-H-elongata_contig59598:2008..29711691679643.055759-CDS-H-elongata_contig59598:2008..2971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59598 2009..2971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59598.13471.1prot_H-elongata_contig59598.13471.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59598 2009..2971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59598.13471.1

>prot_H-elongata_contig59598.13471.1 ID=prot_H-elongata_contig59598.13471.1|Name=mRNA_H-elongata_contig59598.13471.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=321bp
PRDPSVPAELQLFLEQHRSPLPNLMEDRTGAEPPPSRVDLQVGLIYEGQL
RRRDGLPHGWGRVTLPDGAAYEGEWLGGRVHGKGALHLPNGNAYWGSWAL
GRKHGLGTFLWADGSRHDGYYRAGIKSGAGTLRYRTGSVYEGEFEADRRH
GVGRLELPDGSSYDGEWKRDIPDGLGVFVDAGYGGERFEGSWERGVRSGG
GRVVQGWAEKEEKGKTFGNVASASTRSWEETAWYSGNFKNGLPHGEGAMG
FGLATFCGHVERGEWTGGGGILDLGGGRGSFEGTFTDGLPSGSGRWCWEE
SGVEIDCSFEEGYSKNIWPS*
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mRNA from alignment at H-elongata_contig59598:2009..2971-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59598.13471.1 ID=mRNA_H-elongata_contig59598.13471.1|Name=mRNA_H-elongata_contig59598.13471.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=963bp|location=Sequence derived from alignment at H-elongata_contig59598:2009..2971- (Himanthalia elongata Himel1 dioecious)
CCTAGAGACCCGTCCGTCCCAGCCGAGCTACAGCTCTTCCTCGAGCAACA
CCGCTCGCCACTGCCAAATCTCATGGAAGACAGAACCGGTGCCGAGCCAC
CACCATCTCGCGTCGACTTACAAGTCGGATTGATCTACGAGGGTCAGCTT
CGCCGGCGCGACGGTCTGCCGCACGGTTGGGGGCGTGTGACTCTCCCGGA
CGGTGCTGCGTACGAGGGCGAGTGGTTGGGCGGCCGCGTCCATGGAAAGG
GCGCCCTCCACCTCCCCAACGGCAACGCTTATTGGGGATCATGGGCGCTC
GGGCGCAAGCATGGCCTAGGAACCTTCCTGTGGGCGGACGGGTCACGCCA
CGACGGTTACTACAGGGCAGGGATCAAGAGCGGGGCAGGAACTCTGCGTT
ATCGGACTGGTAGCGTCTACGAAGGCGAGTTCGAGGCAGACCGCAGGCAC
GGCGTCGGCCGCCTTGAGCTGCCGGACGGATCGTCTTACGACGGCGAGTG
GAAAAGAGACATCCCTGATGGATTAGGGGTGTTTGTCGACGCAGGGTACG
GTGGGGAGCGGTTCGAGGGCAGCTGGGAACGAGGAGTAAGGTCAGGCGGA
GGTCGGGTGGTGCAGGGTTGGGCAGAAAAGGAAGAGAAGGGCAAGACTTT
CGGGAATGTTGCTTCGGCGAGCACAAGAAGCTGGGAAGAGACAGCGTGGT
ACTCCGGCAACTTCAAGAATGGCCTGCCTCACGGCGAGGGGGCTATGGGC
TTCGGCCTTGCTACCTTCTGCGGACACGTGGAGCGCGGAGAGTGGACTGG
TGGGGGCGGGATACTTGATCTCGGTGGTGGGAGGGGGAGCTTTGAGGGGA
CGTTCACCGACGGCCTGCCGAGCGGCAGTGGGCGGTGGTGCTGGGAGGAA
TCCGGGGTCGAAATTGATTGTTCTTTCGAGGAGGGGTACTCTAAAAATAT
ATGGCCGAGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig59598:2009..2971-

>mRNA_H-elongata_contig59598.13471.1 ID=mRNA_H-elongata_contig59598.13471.1|Name=mRNA_H-elongata_contig59598.13471.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1926bp|location=Sequence derived from alignment at H-elongata_contig59598:2009..2971- (Himanthalia elongata Himel1 dioecious)
CCTAGAGACCCGTCCGTCCCAGCCGAGCTACAGCTCTTCCTCGAGCAACA
CCGCTCGCCACTGCCAAATCTCATGGAAGACAGAACCGGTGCCGAGCCAC
CACCATCTCGCGTCGACTTACAAGTCGGATTGATCTACGAGGGTCAGCTT
CGCCGGCGCGACGGTCTGCCGCACGGTTGGGGGCGTGTGACTCTCCCGGA
CGGTGCTGCGTACGAGGGCGAGTGGTTGGGCGGCCGCGTCCATGGAAAGG
GCGCCCTCCACCTCCCCAACGGCAACGCTTATTGGGGATCATGGGCGCTC
GGGCGCAAGCATGGCCTAGGAACCTTCCTGTGGGCGGACGGGTCACGCCA
CGACGGTTACTACAGGGCAGGGATCAAGAGCGGGGCAGGAACTCTGCGTT
ATCGGACTGGTAGCGTCTACGAAGGCGAGTTCGAGGCAGACCGCAGGCAC
GGCGTCGGCCGCCTTGAGCTGCCGGACGGATCGTCTTACGACGGCGAGTG
GAAAAGAGACATCCCTGATGGATTAGGGGTGTTTGTCGACGCAGGGTACG
GTGGGGAGCGGTTCGAGGGCAGCTGGGAACGAGGAGTAAGGTCAGGCGGA
GGTCGGGTGGTGCAGGGTTGGGCAGAAAAGGAAGAGAAGGGCAAGACTTT
CGGGAATGTTGCTTCGGCGAGCACAAGAAGCTGGGAAGAGACAGCGTGGT
ACTCCGGCAACTTCAAGAATGGCCTGCCTCACGGCGAGGGGGCTATGGGC
TTCGGCCTTGCTACCTTCTGCGGACACGTGGAGCGCGGAGAGTGGACTGG
TGGGGGCGGGATACTTGATCTCGGTGGTGGGAGGGGGAGCTTTGAGGGGA
CGTTCACCGACGGCCTGCCGAGCGGCAGTGGGCGGTGGTGCTGGGAGGAA
TCCGGGGTCGAAATTGATTGTTCTTTCGAGGAGGGGTACTCTAAAAATAT
ATGGCCGAGTTGACCTAGAGACCCGTCCGTCCCAGCCGAGCTACAGCTCT
TCCTCGAGCAACACCGCTCGCCACTGCCAAATCTCATGGAAGACAGAACC
GGTGCCGAGCCACCACCATCTCGCGTCGACTTACAAGTCGGATTGATCTA
CGAGGGTCAGCTTCGCCGGCGCGACGGTCTGCCGCACGGTTGGGGGCGTG
TGACTCTCCCGGACGGTGCTGCGTACGAGGGCGAGTGGTTGGGCGGCCGC
GTCCATGGAAAGGGCGCCCTCCACCTCCCCAACGGCAACGCTTATTGGGG
ATCATGGGCGCTCGGGCGCAAGCATGGCCTAGGAACCTTCCTGTGGGCGG
ACGGGTCACGCCACGACGGTTACTACAGGGCAGGGATCAAGAGCGGGGCA
GGAACTCTGCGTTATCGGACTGGTAGCGTCTACGAAGGCGAGTTCGAGGC
AGACCGCAGGCACGGCGTCGGCCGCCTTGAGCTGCCGGACGGATCGTCTT
ACGACGGCGAGTGGAAAAGAGACATCCCTGATGGATTAGGGGTGTTTGTC
GACGCAGGGTACGGTGGGGAGCGGTTCGAGGGCAGCTGGGAACGAGGAGT
AAGGTCAGGCGGAGGTCGGGTGGTGCAGGGTTGGGCAGAAAAGGAAGAGA
AGGGCAAGACTTTCGGGAATGTTGCTTCGGCGAGCACAAGAAGCTGGGAA
GAGACAGCGTGGTACTCCGGCAACTTCAAGAATGGCCTGCCTCACGGCGA
GGGGGCTATGGGCTTCGGCCTTGCTACCTTCTGCGGACACGTGGAGCGCG
GAGAGTGGACTGGTGGGGGCGGGATACTTGATCTCGGTGGTGGGAGGGGG
AGCTTTGAGGGGACGTTCACCGACGGCCTGCCGAGCGGCAGTGGGCGGTG
GTGCTGGGAGGAATCCGGGGTCGAAATTGATTGTTCTTTCGAGGAGGGGT
ACTCTAAAAATATATGGCCGAGTTGA
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