mRNA_H-elongata_contig59581.13470.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59581.13470.1
Unique NamemRNA_H-elongata_contig59581.13470.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 352 bits (903), Expect = 5.100e-115
Identity = 167/286 (58.39%), Postives = 215/286 (75.17%), Query Frame = 3
Query:  366 MGDVSRILGMNVTRDREKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILIKLIN 1223
            +G+ S +LGM + RDRE   +TISQ+ Y + +++ +GM    PT TPG G E+S  QP + LL+E+E R+Y  I G++MY+AQV RYDI+    QL R M+KP+K H+ A KH LRYLAG+ DFS+TYK+GGF+LA FSD+NW NN DNG+STSSY+ MLA  P+SF+ GLQGLT  STM+AELVA+AL MKEAVFCSNM+ +L F + F  +P+Y DNT+ LH  GNR++  R KHIALR+FF++ELV EGKISIHY  TED LAD+GTKH +KH    L+ LIN
Sbjct:  148 LGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLIN 433          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 350 bits (899), Expect = 1.140e-111
Identity = 167/286 (58.39%), Postives = 216/286 (75.52%), Query Frame = 3
Query:  366 MGDVSRILGMNVTRDREKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILIKLIN 1223
            +G+ S  LGM + RDRE   +TISQ+ Y + +++ +GM    PT TPG G E+S  QP + LL+E+E R+Y  I G++MY+AQV RYDI+    QL R+M+KP+K H+ A KH LRYLAG+ DFS+TYK+GGF+LA FSD+NW NN DNG+STSSY+ MLA  P+SF+ GLQGLT  STM+AELVA+AL MKEAVFCSNM+ +L   + F  +P+Y DNT+ LH  GNR++  R KHIALR+FF++ELV EGKISIHYV TED LAD+GTKH +KH  + L+ LIN
Sbjct:  369 LGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 654          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 1.830e-108
Identity = 166/286 (58.04%), Postives = 216/286 (75.52%), Query Frame = 3
Query:  366 MGDVSRILGMNVTRDREKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILIKLIN 1223
            +G+ S +L M + RDRE   +TISQ+ Y + +++ +GM    PT TPG G E+S  QP + LL+E+E R+Y  I G++MY+AQV RYDI+    QL R M+KP+K H+ A KH LRYLAG+ DFS+TYK+GGF+LA FSD+NW NN DNG+STSSY+ MLA  P+SF+ GLQGLT  STM+AELVA+AL MKEAVFCSNM+ +L F + F  +P+Y DNT+ LH  GNR++  R KHIALR+FF++ELV EGKISIHYV+TED LAD+GTKH + H  + L+ LIN
Sbjct:  708 LGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLIN 993          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 345 bits (886), Expect = 1.960e-103
Identity = 164/286 (57.34%), Postives = 215/286 (75.17%), Query Frame = 3
Query:  366 MGDVSRILGMNVTRDREKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILIKLIN 1223
            +G+ S +LGM + RDRE   +TISQ+ Y + +++ +G+    PT TPG G E+S  QP + LL+E+E R+Y  I G++MY+AQV RYDI+    QL R M+KP+K H+ A KH LRYLAG+ DFS+TYK+GGF+LA FSD+NW NN DNG+STSSY+ +LA  P+SF+ GLQGLT  STM+AELVA+AL M EAVF SNM+ +L F + F  +P+Y DNT+ LH  GNR++  R KHIALR+FF++ELV EGKISIHYV TED LAD+GTKH +KH  + L+ LIN
Sbjct: 1377 LGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 1662          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 5.630e-101
Identity = 153/281 (54.45%), Postives = 207/281 (73.67%), Query Frame = 3
Query:  378 SRILGMNVTRDREKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILIKLI 1220
            S I GM + RDRE+G ++IS++ Y++ ++  +GM +C PT TPG+GP  S  QP E LLN+EE RRY  I G ++YL+Q+ RYDI+   +QL R M+KP+K H+GA K   RYLAG+  F + YK+GGF+L AF+D+NWGNN DNG+STSS++ ML   P++FK GLQ LT QSTM+ ELVAAAL +KEAVFCSN++ +L F +    VPLY DNT+ LH  GNR+Y    KHIALR+FF++ELV EG+I+IHYV  +   AD+GTKHL+K   ++L+ +I
Sbjct:  435 SLISGMEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNII 715          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 3.340e-95
Identity = 148/256 (57.81%), Postives = 195/256 (76.17%), Query Frame = 3
Query:  444 NYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILI 1211
            NYT  ++  +GM SC P  T G GPELS+ QP E LLN E K+RY AI G+VMYLAQVTRYDI+   +Q  RAMS P+K H+GA KHLLRYL+GS DFS+TYK+GGF L A S+ N G+N DNG+S SSYI+M++  P S K GLQ LT  ST++AELVA+AL MKE +FC+NM+ +L F   F S PL+ID+T+ L+V GN+T+    KH+ALR+F+++++V+EG+ISIHY+ TED LAD+GT++L+K  H+ LI
Sbjct:  515 NYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLI 770          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 304 bits (779), Expect = 6.130e-91
Identity = 151/266 (56.77%), Postives = 192/266 (72.18%), Query Frame = 3
Query:  414 EKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILI 1211
            E G +T SQ+NY   ++  +GM S  P  T G GPELS                  AI G+V+YLAQ+TRYDI+   +QL RAMS P+K H+GA KHLLRYL+GS DFS+TYK+GGF L A SD NWGNN DN +S SSYI+M++K P+SFK GLQ LT  ST++AELVAAAL MKE +FC+NM+ +L F   F S PLYI NT+ LHV GN+T+  R KH+ALR+F+++E+V+EG+ISIHY+ TED LAD+GTKHL+K  H+ LI
Sbjct:  436 EDGELTNSQENYPNSILDRFGMGSWKPLSTAGFGPELS------------------AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLI 682          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 3.600e-85
Identity = 128/208 (61.54%), Postives = 158/208 (75.96%), Query Frame = 3
Query:  600 MYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILIKLIN 1223
            MY+AQV RYDI+     L R M+KP+K H    K  LRYLAG+ DFS+TYK+GGF+LA FSD+NW NN DNG+STSSY+ MLA  P+SF+ GLQGLT  STM+AELVA+AL MKEAVFCSNM+ +L F + F  +P+Y DNT+ LH  GNR++  R KHIALR+FF++ELV EGKISIHY  TED LA +GTKH +KH  + L+  IN
Sbjct:    1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRIN 208          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 8.700e-85
Identity = 141/257 (54.86%), Postives = 179/257 (69.65%), Query Frame = 3
Query:  366 MGDVSRILGMNVTRDREKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIH 1136
            +G+VS +LGM VTRD E G +TI+Q +YT  ++  +GME C PT  P +G ELS  QP E +LN+E+ +                        +QL R MSK AKAH+GA KHLLR   G+ DF +TYK+GGF+L AFSD NW +N DN RSTSSY++M++K P+SFK GLQ LT  STM+AEL+AAALTMKEAVFCSNM+ +L F + FG VPLYI+NT+ LHV GN+ Y  R KHIAL +F V+ELV+EG I+IH
Sbjct:  271 LGNVSLVLGMQVTRDGEHGTLTITQADYTRSILARFGMEECKPTSIPSVGSELSTEQPTETVLNKEKTQ------------------------SQLARVMSKAAKAHMGAAKHLLR---GTQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH 500          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 4.660e-83
Identity = 133/285 (46.67%), Postives = 191/285 (67.02%), Query Frame = 3
Query:  366 MGDVSRILGMNVTRDREKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILIKLI 1220
            MG+V R++G+ V RD E G + ISQ  Y  D++Q YGME  NP  TPG G ELS  QP ++LL  EEK+R+  ITG+++YLAQ TRYD+   V+QL RA + PA+ H+ A KHLLRYL G+ D  + YK+G FRL+ F+D+++G N DNGRST+ Y+  L    IS+    Q L  Q+T++AEL A + + +EAV+ SN + ++ F ++F SVP+  D+T AL V  N  +  R KHIALR+FF++EL +  +I++H+  +   LAD+ TKHL K     +++LI
Sbjct:    9 MGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGF-KTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 292          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE5.100e-11558.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE1.140e-11158.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE1.830e-10858.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE1.960e-10357.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG39_9PHAE5.630e-10154.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE3.340e-9557.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBU1_9PHAE6.130e-9156.77CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KMK0_9PHAE3.600e-8561.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6N1_9PHAE8.700e-8554.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KC04_9PHAE4.660e-8346.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59581contigH-elongata_contig59581:2412..3634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1223
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59581.13470.1prot_H-elongata_contig59581.13470.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59581 3239..3460 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.8288007-UTR-H-elongata_contig59581:2411..32381622930964.8288007-UTR-H-elongata_contig59581:2411..3238Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59581 2412..3238 -
1691679643.025854-UTR-H-elongata_contig59581:2411..32381691679643.025854-UTR-H-elongata_contig59581:2411..3238Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59581 2412..3238 -
1622930964.8663354-UTR-H-elongata_contig59581:3460..36341622930964.8663354-UTR-H-elongata_contig59581:3460..3634Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59581 3461..3634 -
1691679643.0460398-UTR-H-elongata_contig59581:3460..36341691679643.0460398-UTR-H-elongata_contig59581:3460..3634Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59581 3461..3634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.8501787-CDS-H-elongata_contig59581:3238..34601622930964.8501787-CDS-H-elongata_contig59581:3238..3460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59581 3239..3460 -
1691679643.0370057-CDS-H-elongata_contig59581:3238..34601691679643.0370057-CDS-H-elongata_contig59581:3238..3460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59581 3239..3460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59581.13470.1

>prot_H-elongata_contig59581.13470.1 ID=prot_H-elongata_contig59581.13470.1|Name=mRNA_H-elongata_contig59581.13470.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MDVELAVIGFRPLKSDPCVYIYEDETGFVILTLYVDDILFLSASKTLLSK
LKKQLMDQFNISDIWATCRESSA*
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mRNA from alignment at H-elongata_contig59581:2412..3634-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59581.13470.1 ID=mRNA_H-elongata_contig59581.13470.1|Name=mRNA_H-elongata_contig59581.13470.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1223bp|location=Sequence derived from alignment at H-elongata_contig59581:2412..3634- (Himanthalia elongata Himel1 dioecious)
GTGCAAATGCTGGATGTGCAGACGGCATTCCTCAATGCCGACGTCAAAGA GGACATGTTCGTCAAGATAGCGCCCGGCTACGAGATCAATGACAATTCAG GAGTTCCTCTTGTCATGAAGCTCAAGAAGAGCTTGTACGGTCTCCGATAG AGCCCAGAGAACTGGTTCGGCACGATGGACGTGGAGCTCGCCGTTATCGG TTTCCGCCCGCTCAAGTCGGATCCGTGCGTGTACATCTACGAGGACGAGA CTGGCTTCGTTATCCTGACACTCTACGTGGACGACATCTTGTTCCTTAGC GCCAGCAAGACTTTGCTCAGCAAGCTCAAGAAGCAGCTGATGGACCAGTT CAATATATCCGACATATGGGCGACGTGTCGAGAATCCTCGGCATGAACGT CACCCGCGACCGTGAGAAGGGGAATATCACCATTAGTCAGAAGAATTACA CGGAGGACATGGTGCAGTGCTACGGTATGGAAAGCTGCAACCCCACGTAC ACCCCCGGAATAGGGCCGGAGCTGTCTCTAAACCAACCGTAGGAGAAGCT GCTGAACGAGGAGGAGAAGCGGCGCTACCATGCAATCACTGGAGCCGTGA TGTACCTTGCACAGGTCACCCGCTACGACATTCTCAACGTGGTCAATCAG CTGGTGAGGGCCATGTCCAAGCCCGCGAAAGCTCACCTGGGGGCGGTCAA GCACCTGCTTCGCTACTTGGCCGGATCCGCAGACTTCTCCCTCACCTACA AGCAAGGCGGGTTTAGGCTTGCTGCCTTCTCAGATACCAACTGGGGCAAC AACTTAGACAACGGCAGATCTACGTCATCGTACATCGTGATGCTGGCCAA AGTCCCGATCAGCTTTAAAGTGGGACTGCAGGGGCTGACCGAACAGTCCA CGATGAAGGCAGAGCTCGTGGCGGCAGCTCTGACAATGAAGGAGGCGGTG TTCTGCTCCAACATGATTCTGAAGCTTGACTTCAATGAGAGCTTCGGCAG CGTGCCGCTGTACATCGACAACACATCGGCACTGCACGTCACCGGCAACC GCACCTACAGACCTCGTGCAAAGCACATCGCGCTGAGGTATTTTTTCGTG CAAGAGCTGGTAGAGGAGGGAAAAATCAGCATCCACTACGTCAAGACCGA GGATCAGCTGGCGGACTTGGGCACCAAGCACCTTAGCAAGCACCTTCATC GCATTCTCATCAAGCTCATCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig59581:2412..3634-

>mRNA_H-elongata_contig59581.13470.1 ID=mRNA_H-elongata_contig59581.13470.1|Name=mRNA_H-elongata_contig59581.13470.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig59581:2412..3634- (Himanthalia elongata Himel1 dioecious)
ATGGACGTGGAGCTCGCCGTTATCGGTTTCCGCCCGCTCAAGTCGGATCC
GTGCGTGTACATCTACGAGGACGAGACTGGCTTCGTTATCCTGACACTCT
ACGTGGACGACATCTTGTTCCTTAGCGCCAGCAAGACTTTGCTCAGCAAG
CTCAAGAAGCAGCTGATGGACCAGTTCAATATATCCGACATATGGGCGAC
GTGTCGAGAATCCTCGGCATGAATGGACGTGGAGCTCGCCGTTATCGGTT
TCCGCCCGCTCAAGTCGGATCCGTGCGTGTACATCTACGAGGACGAGACT
GGCTTCGTTATCCTGACACTCTACGTGGACGACATCTTGTTCCTTAGCGC
CAGCAAGACTTTGCTCAGCAAGCTCAAGAAGCAGCTGATGGACCAGTTCA
ATATATCCGACATATGGGCGACGTGTCGAGAATCCTCGGCATGA
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