mRNA_H-elongata_contig11723.1346.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11723.1346.1
Unique NamemRNA_H-elongata_contig11723.1346.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11723.1346.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.160e-26
Identity = 58/143 (40.56%), Postives = 77/143 (53.85%), Query Frame = 1 
Query:    1 GTISQMADCYFRDNVFVCEAGSFIIEVESDDPFGLICSGCGDCEA---CSLDEPRTAPGCSSTVEHAISQGGYNATLEWLWIQPGYWRAANDSLEILACYKEDACKGGITGSATFCEMGYMGPYCSVCEKNYFSGPGSTCTEC 420
            G +       F  NV  CE G ++  V+ D  +  +C GC    +    S++     P C   ++H  S+GG + T+E L +  GYWRA NDS  +LACY EDAC GG+T    FC+ GY GPYCSVC + Y      TCTEC
Sbjct: 1242 GVLDLEGTSRFSGNVLSCENGMYLDSVDGD-RYQTVCDGCPVNNSDWIVSVENGDRVPICVVQLDHTRSEGG-DTTIETLELSSGYWRATNDSANVLACYNEDACVGGMTNDPAFCQRGYEGPYCSVCSEGYSMSLAFTCTEC 1382
[Close]
BLAST of mRNA_H-elongata_contig11723.1346.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.340e-15
Identity = 50/160 (31.25%), Postives = 76/160 (47.50%), Query Frame = 1 
Query:    1 GTISQMADCYFRDNVFVCEAGSFIIEVESDDP-------FGLICSGCG-DCEACSLDEPRTA--------PGCSSTVEHAISQGGYNATLEWLWIQPGYWRAANDSLEILACYKEDACKGGITGSATFCEMGYMGPYCSVCEKNYFSGPGSTCTECSNSN 432
            G    + D  F  N + C +G +  E E  +        FG++CS C   CE    D P +         P C + +    + G    TL  L +  GY+R + +S  +L CY+E+AC GG T  + +C+ GY G YC+VC++ Y SG   +C+ C   N
Sbjct:  525 GIAGNITDTTFESNTYYCSSGQYGYEYEIGEDEVSGTCRFGVVCSSCAASCE----DNPGSVVVVNDAHVPICETAMTGVDTSGDGGVTLPELNLLRGYYRTSAESQNVLKCYQEEACIGG-TDVSQYCQEGYRGAYCAVCDEGYASGYQFSCSICDGEN 679
[Close]
BLAST of mRNA_H-elongata_contig11723.1346.1 vs. uniprot
Match: A0A836CBV5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBV5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.070e-9
Identity = 29/73 (39.73%), Postives = 40/73 (54.79%), Query Frame = 1 
Query:  208 YNATLEWLWIQPGYWRAANDSLEILACYKEDACKGGITGSAT--FCEMGYMGPYCSVCEKNYFSGPGSTCTEC 420
            Y  T+E + +  GYWR      +I AC++ DAC GG+  +    +C  GY GPYC+VC   Y + PG  C  C
Sbjct: 1633 YGETVETMTLGLGYWRETLTQTDIRACWRSDACDGGMATAEPDQYCAEGYQGPYCAVCADGYAAAPGYQCLNC 1705
[Close]
BLAST of mRNA_H-elongata_contig11723.1346.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 2.640e-9
Identity = 35/89 (39.33%), Postives = 46/89 (51.69%), Query Frame = 1 
Query:  169 CSSTVEHAISQ---GGYNATLEWLWIQPGYWRAANDSLEILACYKEDACKGGITGSAT--FCEMGYMGPYCSVCEKNYFSGPGSTCTEC 420
            C+ +++ AI         AT   L I+ GYWRA   SL I  C+ E ACKGG T +    +C  GY+GP C+VCE  +  G    C  C
Sbjct:  815 CTESIDGAIEGVDCASAGATTTELPIKAGYWRANVTSLTIRECFNEGACKGGTTVAEVQEYCNEGYVGPQCAVCETGFGKGMADECHSC 903
[Close]
BLAST of mRNA_H-elongata_contig11723.1346.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 6.640e-9
Identity = 34/89 (38.20%), Postives = 46/89 (51.69%), Query Frame = 1 
Query:  169 CSSTVEHAISQ---GGYNATLEWLWIQPGYWRAANDSLEILACYKEDACKGGITGSAT--FCEMGYMGPYCSVCEKNYFSGPGSTCTEC 420
            C+ +++ AI         AT   L I+ GYWRA   SL I  C+ E ACKGG T +    +C  GY+GP C+VC+  +  G    C  C
Sbjct:  851 CTESIDGAIEGVDCASAGATTTELPIKAGYWRANVTSLTIRECFNEGACKGGTTVAEVQDYCNEGYVGPQCAVCDTGFGKGVADECHSC 939
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11723.1346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JY65_9PHAE4.160e-2640.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI3_9PHAE2.340e-1531.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CBV5_9STRA1.070e-939.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G119_ECTSI2.640e-939.33Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FXY9_ECTSI6.640e-938.20Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11723contigH-elongata_contig11723:310..1904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue2.6e-28
Seed eggNOG ortholog2880.D7G2Z8
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size438
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11723.1346.1prot_H-elongata_contig11723.1346.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11723 310..1889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929682.7514653-CDS-H-elongata_contig11723:309..3861622929682.7514653-CDS-H-elongata_contig11723:309..386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11723 310..386 -
1691679117.795661-CDS-H-elongata_contig11723:309..3861691679117.795661-CDS-H-elongata_contig11723:309..386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11723 310..386 -
1622929682.7730901-CDS-H-elongata_contig11723:889..11661622929682.7730901-CDS-H-elongata_contig11723:889..1166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11723 890..1166 -
1691679117.8097963-CDS-H-elongata_contig11723:889..11661691679117.8097963-CDS-H-elongata_contig11723:889..1166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11723 890..1166 -
1622929682.7859142-CDS-H-elongata_contig11723:1820..18891622929682.7859142-CDS-H-elongata_contig11723:1820..1889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11723 1821..1889 -
1691679117.8219047-CDS-H-elongata_contig11723:1820..18891691679117.8219047-CDS-H-elongata_contig11723:1820..1889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11723 1821..1889 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929682.8006253-UTR-H-elongata_contig11723:1889..19041622929682.8006253-UTR-H-elongata_contig11723:1889..1904Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11723 1890..1904 -
1691679117.8305416-UTR-H-elongata_contig11723:1889..19041691679117.8305416-UTR-H-elongata_contig11723:1889..1904Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11723 1890..1904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11723.1346.1

>prot_H-elongata_contig11723.1346.1 ID=prot_H-elongata_contig11723.1346.1|Name=mRNA_H-elongata_contig11723.1346.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MADCYFRDNVFVCEAGSFIIEVESDDPFGLICSGCGDCEACSLDEPRTAP
GCSSTVEHAISQGGYNATLEWLWIQPGYWRAANDSLEILACYKEDACKGG
ITGSATFCEMGYMGPYCSVCEKNYFSGPGSTCTECSNSNTW
back to top

mRNA from alignment at H-elongata_contig11723:310..1904-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11723.1346.1 ID=mRNA_H-elongata_contig11723.1346.1|Name=mRNA_H-elongata_contig11723.1346.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1595bp|location=Sequence derived from alignment at H-elongata_contig11723:310..1904- (Himanthalia elongata Himel1 dioecious)
GGGACTATATCTCAGATGGCCGACTGCTACTTCCGCGACAACGTGTTCGT
TTGCGAGGCGGGGAGTTTTATCATCGAAGTTGAGGTAAGGCAGTGGCTGA
GGTGTGGGCAGGTCCTTCAGACGGCGAATAAGCACAGCCTGCACAAAAAA
ATGTCTTCGTATAGGCGTCAGCCGAAGCCGCCTAAGAATGCCTTGTGTCA
AAAGCCATAAACGATATATGGTAGCTGTTTCTTATCCGAAGTTGGAGCAA
TTTGAGGTCGATCTTCGGGAATTAGGCCACCCATTTATGAGATCTGTGAT
CCTCCCCCCCTCCTCCCCCCTCCCAAACACGCGAATCGTTCGGAAATGTT
GCGAGCTGTGTGGGCTACCAAGCCTGGGAAAGAAGCAATAACCACCTGTA
TCGTACGCATCAATCTATTCGCTGGTTGATGGTTCGAAAACAAGAGGGAG
ATTCAGTAATCCCGCCTTCCTGGTCGATGTTGCAGTCGGGGAAAAGGATA
CAAACACATACAAAAAATAATTTATTGATATTGTTAACGGACATCCAAAT
TGACACGTGGCCCGTAGATGCTTTGGAAGGCGGAATATGATCGAGCCTTC
GCAAGGAGGAAAGGGGAAAGAGGAGGACGAGGGATTGCAGCGTAACACCA
CCCTCTTACGCATTTGTTATCAACATCAATCACATCTCTTAGGGGCGACC
TTCCATTCCCGCTTTCTCTCTCCCTTGTCGCGTCCCAGTCTGATGATCCC
TTCGGCCTCATTTGCTCCGGGTGTGGGGACTGCGAGGCGTGCTCGCTCGA
CGAGCCGCGGACGGCTCCTGGGTGCTCCTCCACGGTAGAGCACGCGATCA
GCCAAGGAGGATACAACGCTACGCTGGAGTGGCTGTGGATTCAGCCAGGG
TATTGGCGAGCAGCTAACGACAGCCTCGAGATATTGGCGTGCTACAAGGA
AGATGCTTGCAAGGGGGGGATAACGGGCTCGGCGACCTTTTGCGAAATGG
GCTACATGGGACCATGTGAGTACCGCAGCGCGCTCGTTGAAGCCATGGCT
CGCAAATAGGAGTTGTTCAAGGTGAAGATTGGGCGCAAGGCAAGGACATC
CAAACCACTCTCTGCCTAGTACTTTTACGCGTCATTTACTGTTGAGCAGC
TATTACGTCCAGGGAGCTTTGGTGAGATGTGGCGCACAGAGTGGATGGCG
GTCAAACTTCATGGTGTGTCGGTTTCCCTCTGAGTGTTCGAATGTCACGA
GACATGCCCTTGATGGAGCACAACACGAGAGGACAAGCCGCGTGTTGCTG
GAGAGAGAAAGCTTGGAGAAAGTAACCGTACCGTGCGGACCAGCCCGCGG
TCGTGGGACTCTTAAAGCGCTGCGTAGATATGTTACCACAAGCTTTGCTC
CTTTCCTTCCATTGCTTCGGCTTGGTCATAATGGTCATAATCGCCGTCCG
ACATTCATCGCACCCCCACCCCCACCCCCGCGTCTCTTGGATCTCTGTCA
CTGCCGCCATCGAGTCAGATTGTTCTGTCTGCGAGAAGAACTATTTCAGT
GGGCCCGGTTCCACCTGCACGGAGTGTTCCAATTCTAACACATGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11723:310..1904-

>mRNA_H-elongata_contig11723.1346.1 ID=mRNA_H-elongata_contig11723.1346.1|Name=mRNA_H-elongata_contig11723.1346.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig11723:310..1904- (Himanthalia elongata Himel1 dioecious)
ATGGCCGACTGCTACTTCCGCGACAACGTGTTCGTTTGCGAGGCGGGGAG
TTTTATCATCGAAGTTGAGATGGCCGACTGCTACTTCCGCGACAACGTGT
TCGTTTGCGAGGCGGGGAGTTTTATCATCGAAGTTGAGTCTGATGATCCC
TTCGGCCTCATTTGCTCCGGGTGTGGGGACTGCGAGGCGTGCTCGCTCGA
CGAGCCGCGGACGGCTCCTGGGTGCTCCTCCACGGTAGAGCACGCGATCA
GCCAAGGAGGATACAACGCTACGCTGGAGTGGCTGTGGATTCAGCCAGGG
TATTGGCGAGCAGCTAACGACAGCCTCGAGATATTGGCGTGCTACAAGGA
AGATGCTTGCAAGGGGGGGATAACGGGCTCGGCGACCTTTTGCGAAATGG
GCTACATGGGACCATTCTGATGATCCCTTCGGCCTCATTTGCTCCGGGTG
TGGGGACTGCGAGGCGTGCTCGCTCGACGAGCCGCGGACGGCTCCTGGGT
GCTCCTCCACGGTAGAGCACGCGATCAGCCAAGGAGGATACAACGCTACG
CTGGAGTGGCTGTGGATTCAGCCAGGGTATTGGCGAGCAGCTAACGACAG
CCTCGAGATATTGGCGTGCTACAAGGAAGATGCTTGCAAGGGGGGGATAA
CGGGCTCGGCGACCTTTTGCGAAATGGGCTACATGGGACCATATTGTTCT
GTCTGCGAGAAGAACTATTTCAGTGGGCCCGGTTCCACCTGCACGGAGTG
TTCCAATTCTAACACATGGATTGTTCTGTCTGCGAGAAGAACTATTTCAG
TGGGCCCGGTTCCACCTGCACGGAGTGTTCCAATTCTAACACATGG
back to top