mRNA_H-elongata_contig59466.13460.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59466.13460.1
Unique NamemRNA_H-elongata_contig59466.13460.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59466.13460.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 8.230e-19
Identity = 45/88 (51.14%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    1 QDVVTRWSSTCTMVERLLELREPIKTPDEADKVEPLLTAADWVVLEMALQVLQPFMQTQKSLECRNYVTGSLVVPFIHDLRTSLEGAI 264
            QDV TRW S+  M+ERLL L + IK  +  D + P+L+  DW VL +   +L+PFMQ QK LE   YVTGS+ VP I +LR  LE AI
Sbjct:  229 QDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLEAAI 316          
BLAST of mRNA_H-elongata_contig59466.13460.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.230e-16
Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 QDVVTRWSSTCTMVERLLELREPIKTPDEADKVEPLLTAADWVVLEMALQVLQPFMQTQKSLECRNYVTGSLVVPFIHDLRTSLEGAI 264
            QDV TRW ST  MV RLL L + IK  +  D+V PLL+  DW VL +   +L+PFM+ QK LE   YVTGS+ +  + +LR  LE AI
Sbjct:  193 QDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAI 280          
BLAST of mRNA_H-elongata_contig59466.13460.1 vs. uniprot
Match: UPI000B93611E (zinc finger BED domain-containing protein 1-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B93611E)

HSP 1 Score: 62.4 bits (150), Expect = 2.450e-9
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 1
Query:    1 QDVVTRWSSTCTMVERLLELREPIKTPDEADKVEP-LLTAADWVVLEMALQVLQPFMQTQKSLECRNYVTGSLVVPFIHDLRTSLEGAIP 267
            QDV TRW+S   MVERL+E++ PI     + +  P  LTA +W ++     +L+PF      L    Y T SLV+P I DL+ +++   P
Sbjct:  275 QDVSTRWNSCLIMVERLIEIKNPISAAMSSLRRAPNCLTATEWDLIADCAPILKPFEHMTSELSGEKYPTLSLVIPLIRDLQYTVKNIKP 364          
BLAST of mRNA_H-elongata_contig59466.13460.1 vs. uniprot
Match: UPI000B939B7C (zinc finger BED domain-containing protein 1-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B939B7C)

HSP 1 Score: 62.0 bits (149), Expect = 3.160e-9
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1
Query:    1 QDVVTRWSSTCTMVERLLELREPIK----TPDEADKVEPLLTAADWVVLEMALQVLQPFMQTQKSLECRNYVTGSLVVPFIHDLRTSLEGAIP 267
            QDV TRW+ST  M+ERLL+L+EPI     T  EA    P L++ +W V+E  + +L+PF      L    Y T S V+P I  L+ +L    P
Sbjct:   86 QDVCTRWNSTLVMMERLLQLKEPITIVIMTLKEAP---PNLSSDEWDVVEDCIPLLKPFHSITVELSAEEYPTISKVIPLIRGLQIALTNKDP 175          
BLAST of mRNA_H-elongata_contig59466.13460.1 vs. uniprot
Match: UPI000873C321 (zinc finger BED domain-containing protein 1-like n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000873C321)

HSP 1 Score: 61.2 bits (147), Expect = 5.960e-9
Identity = 30/75 (40.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 QDVVTRWSSTCTMVERLLELREPIKTPDEA-DKVEPLLTAADWVVLEMALQVLQPFMQTQKSLECRNYVTGSLVV 222
            QDVVTRW+ST  MV+R +EL EPI+T     +K  P+++  +W  L+  + +L+P     K +   NYVT S+ +
Sbjct:  168 QDVVTRWNSTYYMVDRFVELEEPIRTTMALLNKDFPVISLEEWNFLKELIHILEPLENVTKLMSAENYVTASMTI 242          
BLAST of mRNA_H-elongata_contig59466.13460.1 vs. uniprot
Match: UPI000B939146 (zinc finger BED domain-containing protein 1-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B939146)

HSP 1 Score: 61.2 bits (147), Expect = 6.360e-9
Identity = 30/82 (36.59%), Postives = 47/82 (57.32%), Query Frame = 1
Query:    1 QDVVTRWSSTCTMVERLLELREPIK-TPDEADKVEPLLTAADWVVLEMALQVLQPFMQTQKSLECRNYVTGSLVVPFIHDLR 243
            QDVVTRW+S+  M+ERLL+++ P+  T     +    L A +W +L   + +L+PF      L   NY+T S ++P I  L+
Sbjct:  308 QDVVTRWNSSLIMIERLLDIKNPLSATMSSLPRAPNCLNACEWEILLDCIHILKPFEIMTAELSGENYITISSIIPLIRGLQ 389          
BLAST of mRNA_H-elongata_contig59466.13460.1 vs. uniprot
Match: J9LSU7_ACYPI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LSU7_ACYPI)

HSP 1 Score: 60.8 bits (146), Expect = 8.650e-9
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    1 QDVVTRWSSTCTMVERLLELREPIK-TPDEADKVEPLLTAADWVVLEMALQVLQPFMQTQKSLECRNYVTGSLVVPFIHDLR 243
            QDVVTRW+S+  M+ERL++++ P+  T     +    L A +W ++  ++ +L+PF      L   NYVT S ++P I  L+
Sbjct:  258 QDVVTRWNSSLIMIERLIDIKNPLSATMSSLPRAPNYLNACEWEIILDSIHILKPFEIMTAELLGENYVTSSSIIPLIRGLQ 339          
BLAST of mRNA_H-elongata_contig59466.13460.1 vs. uniprot
Match: UPI000DC1421C (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC1421C)

HSP 1 Score: 60.1 bits (144), Expect = 1.600e-8
Identity = 30/86 (34.88%), Postives = 49/86 (56.98%), Query Frame = 1
Query:    1 QDVVTRWSSTCTMVERLLELREPIK-TPDEADKVEPLLTAADWVVLEMALQVLQPFMQTQKSLECRNYVTGSLVVPFIHDLRTSLE 255
            QDVVTRW+S+  M+ERL++++ P+  T     +    L A +W ++   + +L+PF      L   NYVT S ++P I  L+  L+
Sbjct:  241 QDVVTRWNSSLIMIERLIDIKNPLSATMSSLPQAPNYLNACEWEIILDCIHILKPFEIMTAELSGENYVTISSIIPLIRGLQHILK 326          
BLAST of mRNA_H-elongata_contig59466.13460.1 vs. uniprot
Match: UPI001113BC33 (zinc finger BED domain-containing protein 1-like n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=UPI001113BC33)

HSP 1 Score: 59.7 bits (143), Expect = 2.230e-8
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 1
Query:    1 QDVVTRWSSTCTMVERLLELREPIKTPDEADKVEP-LLTAADWVVLEMALQVLQPFMQTQKSLECRNYVTGSLVVPFIHDLRTSLEGAIP 267
            QDV TRW+S   M+ERL+E++ PI     + +  P  LTA +W ++     +L+PF      L    Y T SLV+P I  L+ +++   P
Sbjct:  384 QDVSTRWNSCLIMIERLIEIKNPISAAMSSLRRAPNFLTATEWDLIADCAPILKPFEHMTSELSGEKYPTLSLVIPLIRGLQYTVKNIKP 473          
BLAST of mRNA_H-elongata_contig59466.13460.1 vs. uniprot
Match: J9LS52_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LS52_ACYPI)

HSP 1 Score: 59.7 bits (143), Expect = 2.270e-8
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 1
Query:    1 QDVVTRWSSTCTMVERLLELREPIKTPDEADKVEP-LLTAADWVVLEMALQVLQPFMQTQKSLECRNYVTGSLVVPFIHDLRTSLEGAIP 267
            QDV TRW+S   M+ERL+E++ PI     + +  P  LTA +W ++     +L+PF      L    Y T SLV+P I  L+ +++   P
Sbjct:  344 QDVSTRWNSCLIMIERLIEIKNPISAAMSSLRRAPNFLTATEWDLIADCAPILKPFEHMTSELSGEKYPTLSLVIPLIRGLQYTVKNIKP 433          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59466.13460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUY5_9PHAE8.230e-1951.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS5_ECTSI1.230e-1650.00Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
UPI000B93611E2.450e-937.78zinc finger BED domain-containing protein 1-like n... [more]
UPI000B939B7C3.160e-940.86zinc finger BED domain-containing protein 1-like n... [more]
UPI000873C3215.960e-940.00zinc finger BED domain-containing protein 1-like n... [more]
UPI000B9391466.360e-936.59zinc finger BED domain-containing protein 1-like n... [more]
J9LSU7_ACYPI8.650e-935.37Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ac... [more]
UPI000DC1421C1.600e-834.88zinc finger BED domain-containing protein 1-like n... [more]
UPI001113BC332.230e-835.56zinc finger BED domain-containing protein 1-like n... [more]
J9LS52_ACYPI2.270e-835.56Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59466contigH-elongata_contig59466:1685..1960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue9.2e-14
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.6332-CDS-H-elongata_contig59466:1684..19601622930963.6332-CDS-H-elongata_contig59466:1684..1960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59466 1685..1960 -
1691679642.5358334-CDS-H-elongata_contig59466:1684..19601691679642.5358334-CDS-H-elongata_contig59466:1684..1960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59466 1685..1960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59466.13460.1prot_H-elongata_contig59466.13460.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59466 1685..1960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59466.13460.1

>prot_H-elongata_contig59466.13460.1 ID=prot_H-elongata_contig59466.13460.1|Name=mRNA_H-elongata_contig59466.13460.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
QDVVTRWSSTCTMVERLLELREPIKTPDEADKVEPLLTAADWVVLEMALQ
VLQPFMQTQKSLECRNYVTGSLVVPFIHDLRTSLEGAIPPVS
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mRNA from alignment at H-elongata_contig59466:1685..1960-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59466.13460.1 ID=mRNA_H-elongata_contig59466.13460.1|Name=mRNA_H-elongata_contig59466.13460.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at H-elongata_contig59466:1685..1960- (Himanthalia elongata Himel1 dioecious)
CAAGACGTGGTAACTAGGTGGTCATCCACGTGCACCATGGTGGAGCGGCT GCTGGAGTTGAGGGAACCAATCAAGACGCCCGATGAGGCGGACAAGGTGG AGCCGCTGCTGACGGCCGCAGACTGGGTGGTGCTTGAGATGGCACTTCAG GTGCTGCAGCCGTTCATGCAAACGCAGAAATCGCTGGAGTGCCGAAACTA CGTGACAGGAAGCTTGGTGGTGCCCTTCATCCACGACCTCCGCACCAGCC TCGAGGGAGCGATTCCGCCAGTCAGT
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Coding sequence (CDS) from alignment at H-elongata_contig59466:1685..1960-

>mRNA_H-elongata_contig59466.13460.1 ID=mRNA_H-elongata_contig59466.13460.1|Name=mRNA_H-elongata_contig59466.13460.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig59466:1685..1960- (Himanthalia elongata Himel1 dioecious)
CAAGACGTGGTAACTAGGTGGTCATCCACGTGCACCATGGTGGAGCGGCT
GCTGGAGTTGAGGGAACCAATCAAGACGCCCGATGAGGCGGACAAGGTGG
AGCCGCTGCTGACGGCCGCAGACTGGGTGGTGCTTGAGATGGCACTTCAG
GTGCTGCAGCCGTTCATGCAAACGCAGAAATCGCTGGAGTGCCGAAACTA
CGTGACAGGAAGCTTGGTGGTGCCCTTCATCCACGACCTCCGCACCAGCC
TCGAGGGAGCGATTCCGCCAGTCAGTCAAGACGTGGTAACTAGGTGGTCA
TCCACGTGCACCATGGTGGAGCGGCTGCTGGAGTTGAGGGAACCAATCAA
GACGCCCGATGAGGCGGACAAGGTGGAGCCGCTGCTGACGGCCGCAGACT
GGGTGGTGCTTGAGATGGCACTTCAGGTGCTGCAGCCGTTCATGCAAACG
CAGAAATCGCTGGAGTGCCGAAACTACGTGACAGGAAGCTTGGTGGTGCC
CTTCATCCACGACCTCCGCACCAGCCTCGAGGGAGCGATTCCGCCAGTCA
GT
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