mRNA_H-elongata_contig5942.13455.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5942.13455.1
Unique NamemRNA_H-elongata_contig5942.13455.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5942.13455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5942contigH-elongata_contig5942:8618..8988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size371
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.2341182-CDS-H-elongata_contig5942:8617..89501622930963.2341182-CDS-H-elongata_contig5942:8617..8950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5942 8618..8950 +
1691679642.3556893-CDS-H-elongata_contig5942:8617..89501691679642.3556893-CDS-H-elongata_contig5942:8617..8950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5942 8618..8950 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.2529373-UTR-H-elongata_contig5942:8950..89881622930963.2529373-UTR-H-elongata_contig5942:8950..8988Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5942 8951..8988 +
1691679642.3721342-UTR-H-elongata_contig5942:8950..89881691679642.3721342-UTR-H-elongata_contig5942:8950..8988Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5942 8951..8988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5942.13455.1prot_H-elongata_contig5942.13455.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5942 8618..8950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5942.13455.1

>prot_H-elongata_contig5942.13455.1 ID=prot_H-elongata_contig5942.13455.1|Name=mRNA_H-elongata_contig5942.13455.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MPGPIASHFCIPITYFQLRYRCLHLLFQCHHFYRFLCHRRVIFTCNDESR
FPQIPFRPATFCYLASESLESCPDHFEGELTVAATGLSVYHFLFHNFFKL
FAATKLSFIM*
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mRNA from alignment at H-elongata_contig5942:8618..8988+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5942.13455.1 ID=mRNA_H-elongata_contig5942.13455.1|Name=mRNA_H-elongata_contig5942.13455.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=371bp|location=Sequence derived from alignment at H-elongata_contig5942:8618..8988+ (Himanthalia elongata Himel1 dioecious)
ATGCCCGGGCCAATTGCTAGTCACTTTTGTATTCCCATCACATATTTCCA
ACTGCGTTACCGTTGCCTTCACCTATTATTTCAATGTCACCACTTCTACC
GCTTCCTTTGCCACCGCCGCGTGATTTTCACTTGCAATGACGAGAGCCGT
TTTCCACAAATCCCTTTCCGTCCGGCTACGTTTTGTTACCTTGCAAGCGA
ATCACTGGAATCGTGTCCAGATCATTTTGAGGGCGAACTCACCGTTGCAG
CCACCGGGCTGAGTGTATATCATTTTCTCTTCCATAATTTCTTTAAACTA
TTTGCTGCCACGAAATTATCATTCATCATGTGATAAACAAATCTTGCCCG
CAGGTCGCGTGCAAAACCTCC
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Coding sequence (CDS) from alignment at H-elongata_contig5942:8618..8988+

>mRNA_H-elongata_contig5942.13455.1 ID=mRNA_H-elongata_contig5942.13455.1|Name=mRNA_H-elongata_contig5942.13455.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig5942:8618..8988+ (Himanthalia elongata Himel1 dioecious)
ATGCCCGGGCCAATTGCTAGTCACTTTTGTATTCCCATCACATATTTCCA
ACTGCGTTACCGTTGCCTTCACCTATTATTTCAATGTCACCACTTCTACC
GCTTCCTTTGCCACCGCCGCGTGATTTTCACTTGCAATGACGAGAGCCGT
TTTCCACAAATCCCTTTCCGTCCGGCTACGTTTTGTTACCTTGCAAGCGA
ATCACTGGAATCGTGTCCAGATCATTTTGAGGGCGAACTCACCGTTGCAG
CCACCGGGCTGAGTGTATATCATTTTCTCTTCCATAATTTCTTTAAACTA
TTTGCTGCCACGAAATTATCATTCATCATGTGAATGCCCGGGCCAATTGC
TAGTCACTTTTGTATTCCCATCACATATTTCCAACTGCGTTACCGTTGCC
TTCACCTATTATTTCAATGTCACCACTTCTACCGCTTCCTTTGCCACCGC
CGCGTGATTTTCACTTGCAATGACGAGAGCCGTTTTCCACAAATCCCTTT
CCGTCCGGCTACGTTTTGTTACCTTGCAAGCGAATCACTGGAATCGTGTC
CAGATCATTTTGAGGGCGAACTCACCGTTGCAGCCACCGGGCTGAGTGTA
TATCATTTTCTCTTCCATAATTTCTTTAAACTATTTGCTGCCACGAAATT
ATCATTCATCATGTGA
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