mRNA_H-elongata_contig59416.13454.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59416.13454.1
Unique NamemRNA_H-elongata_contig59416.13454.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A6H5L1A3_9PHAE (CTP synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A3_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 5.340e-29
Identity = 56/83 (67.47%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSS---MSPPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
            SVLTV+DVTNIY +P +LV+Q+LH++F++QLGF+    +SPP+M+ W RLA+ VD++ TPVRIAIVGKYTGLQDSYLSVIK L
Sbjct:  266 SVLTVYDVTNIYKVPLVLVEQDLHNIFRRQLGFARTRFVSPPDMAKWDRLASCVDEVTTPVRIAIVGKYTGLQDSYLSVIKAL 348          
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A835Z0Y6_9STRA (CTP synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Y6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.480e-21
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    4 VLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSSMSPPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
            VLTVHDV+NIY++P  LV+QNLH++ K+QL    +  P+M  WT LA  VD    P+ IA+VGKYTGLQDSYLSVIK L
Sbjct:  241 VLTVHDVSNIYHVPLKLVEQNLHNMLKEQLKLP-IHEPDMKEWTMLAQKVDTSTMPISIAVVGKYTGLQDSYLSVIKSL 318          
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A2I0KZN6_PUNGR (CTP_synth_N domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0KZN6_PUNGR)

HSP 1 Score: 88.2 bits (217), Expect = 1.700e-20
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGF-SSMSPPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
            ++L +HDV NI+++P +L  QN HH   KQL   S ++PP++  WT++A   D L T VRIA+VGKY GL DSYLSV+K L
Sbjct:   20 NILNIHDVPNIWHVPLLLRNQNGHHSILKQLNLLSKIAPPDLRDWTKMAETFDNLTTSVRIAMVGKYVGLTDSYLSVVKAL 100          
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A0D2SC50_GOSRA (CTP synthase n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2SC50_GOSRA)

HSP 1 Score: 88.6 bits (218), Expect = 7.890e-19
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSSMS-PPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
            ++L +HDV NI++IP +L  QN HH   KQL   S++ PP++  WTR+A   D L   VRIA+VGKY GL DSYLSV+K L
Sbjct:  240 NILNIHDVPNIWHIPLLLRNQNAHHSILKQLDLLSIATPPDLEAWTRMAETFDNLTDSVRIAMVGKYVGLTDSYLSVVKAL 320          
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A8J9S9G7_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S9G7_PHATR)

HSP 1 Score: 87.4 bits (215), Expect = 8.980e-19
Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSSMSPPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
            +VL+VHDV N+Y++P +L +QNLH +  K+L       P++  WT +A +++     V IA++GKYTGLQDSYLSVIKGL
Sbjct:  238 NVLSVHDVNNVYFVPGLLQEQNLHEILGKELCLDKPLNPDLGSWTTMAHSIELASHTVTIALIGKYTGLQDSYLSVIKGL 317          
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A1U8K084_GOSHI (CTP synthase n=22 Tax=Malvaceae TaxID=3629 RepID=A0A1U8K084_GOSHI)

HSP 1 Score: 88.6 bits (218), Expect = 9.640e-19
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSSMS-PPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
            ++L +HDV NI++IP +L  QN HH   KQL   S++ PP++  WTR+A   D L   VRIA+VGKY GL DSYLSV+K L
Sbjct:  240 NILNIHDVPNIWHIPLLLRNQNAHHSILKQLDLLSIATPPDLEAWTRMAETFDNLTDSVRIAMVGKYVGLTDSYLSVVKAL 320          
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A6P8BUV3_PUNGR (CTP synthase n=3 Tax=Punica granatum TaxID=22663 RepID=A0A6P8BUV3_PUNGR)

HSP 1 Score: 88.2 bits (217), Expect = 1.320e-18
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGF-SSMSPPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
            ++L +HDV NI+++P +L  QN HH   KQL   S ++PP++  WT++A   D L T VRIA+VGKY GL DSYLSV+K L
Sbjct:  240 NILNIHDVPNIWHVPLLLRNQNGHHSILKQLNLLSKIAPPDLRDWTKMAETFDNLTTSVRIAMVGKYVGLTDSYLSVVKAL 320          
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: V4TD03_CITCL (CTP_synth_N domain-containing protein n=2 Tax=rosids TaxID=71275 RepID=V4TD03_CITCL)

HSP 1 Score: 87.4 bits (215), Expect = 1.510e-18
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSSMS-PPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
            ++L +HDV NI+++P +L  QN HH   KQL   S++ PPN+  WT+ A   D L   VRIA+VGKY GL DSYLSV+K L
Sbjct:  240 NILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIAAPPNLQAWTKRAETYDNLKNSVRIAMVGKYVGLADSYLSVVKAL 320          
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A0D2MU35_GOSRA (CTP synthase n=2 Tax=Malvoideae TaxID=214907 RepID=A0A0D2MU35_GOSRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.630e-18
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSSMS-PPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
            ++L +HDV NI++IP +L  QN HH   KQL   S++ PP++  WTR A   D L   VRIA+VGKY GL DSYLSV+K L
Sbjct:   77 NILNIHDVPNIWHIPLLLRNQNAHHSILKQLNLLSIATPPDLEAWTRRAETFDNLTDSVRIAMVGKYVGLTDSYLSVVKAL 157          
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: W7TKH0_9STRA (CTP synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKH0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.410e-18
Identity = 46/81 (56.79%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    4 VLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSS-MSP-PNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
            VL+VHDV+NIY++P IL +QNLH + +  L     M+P P++  WT LAT+VD     V+IAIVGKYTGL DSYLSV+K L
Sbjct:  192 VLSVHDVSNIYHVPIILAEQNLHGILRDHLKLERIMTPEPDLVRWTELATSVDIFEEQVKIAIVGKYTGLSDSYLSVLKAL 272          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1A3_9PHAE5.340e-2967.47CTP synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835Z0Y6_9STRA6.480e-2160.76CTP synthase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A2I0KZN6_PUNGR1.700e-2051.85CTP_synth_N domain-containing protein (Fragment) n... [more]
A0A0D2SC50_GOSRA7.890e-1953.09CTP synthase n=1 Tax=Gossypium raimondii TaxID=297... [more]
A0A8J9S9G7_PHATR8.980e-1950.00Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A1U8K084_GOSHI9.640e-1953.09CTP synthase n=22 Tax=Malvaceae TaxID=3629 RepID=A... [more]
A0A6P8BUV3_PUNGR1.320e-1851.85CTP synthase n=3 Tax=Punica granatum TaxID=22663 R... [more]
V4TD03_CITCL1.510e-1851.85CTP_synth_N domain-containing protein n=2 Tax=rosi... [more]
A0A0D2MU35_GOSRA1.630e-1853.09CTP synthase n=2 Tax=Malvoideae TaxID=214907 RepID... [more]
W7TKH0_9STRA2.410e-1856.79CTP synthase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59416contigH-elongata_contig59416:2970..3511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.7
Seed ortholog evalue2.1e-14
Seed eggNOG ortholog29730.Gorai.007G124600.1
KEGG rclassRC00010,RC00074
KEGG koko:K01937
KEGG ReactionR00571,R00573
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00052
GOsGO:0003674,GO:0003824,GO:0003883,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006629,GO:0006644,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044283,GO:0046036,GO:0046112,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen
EggNOG OGs37IAM@33090,3GBDT@35493,COG0504@1,KOG2387@2759
EC6.3.4.2
COG Functional cat.F
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.1535962-CDS-H-elongata_contig59416:2969..30321622930963.1535962-CDS-H-elongata_contig59416:2969..3032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59416 2970..3032 +
1691679642.3125207-CDS-H-elongata_contig59416:2969..30321691679642.3125207-CDS-H-elongata_contig59416:2969..3032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59416 2970..3032 +
1622930963.1733065-CDS-H-elongata_contig59416:3334..35111622930963.1733065-CDS-H-elongata_contig59416:3334..3511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59416 3335..3511 +
1691679642.338858-CDS-H-elongata_contig59416:3334..35111691679642.338858-CDS-H-elongata_contig59416:3334..3511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59416 3335..3511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59416.13454.1prot_H-elongata_contig59416.13454.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59416 2970..3511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59416.13454.1

>prot_H-elongata_contig59416.13454.1 ID=prot_H-elongata_contig59416.13454.1|Name=mRNA_H-elongata_contig59416.13454.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSSMSPPNMSMWTRLATA
VDQLVTPVRIAIVGKYTGLQDSYLSVIKGL
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mRNA from alignment at H-elongata_contig59416:2970..3511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59416.13454.1 ID=mRNA_H-elongata_contig59416.13454.1|Name=mRNA_H-elongata_contig59416.13454.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=542bp|location=Sequence derived from alignment at H-elongata_contig59416:2970..3511+ (Himanthalia elongata Himel1 dioecious)
AGCGTACTAACCGTCCATGATGTAACGAACATCTACTATATACCAACTAT ACTGGTCCAGCAGGTGAGGTTGCGCAGCGCTCAAGTAATCTACCGCGTAC ATTTCGTGTTTCACAATTCGATTCTCCTGGATCCTGGTTTGTGTTGAGGC CCTCTGAAACGATATGCGTTGAAAGCTGCCTCAGTGGGAAAAAAAGCTGA CCAGAAGGTATATCCTTTTTGTTTTTGAGTGGCTTGGGGAGTGTCGGGTG CAGCGAGTGGTAAATTGGGGAGCTTTCATAAGCGTTGGGGCTTACTTCGA TAATGAGCTTAGAACTTATGACGCACTCCGCATGCCTCGGACAACTAACT GCCTGTCCACCACAGAACCTGCACCACCTCTTCAAGAAACAGCTTGGATT CTCAAGTATGTCCCCCCCCAACATGAGCATGTGGACCCGCCTCGCGACCG CCGTGGACCAGTTAGTGACCCCTGTTCGAATAGCCATTGTGGGTAAATAC ACGGGTCTCCAAGACTCGTATTTGAGTGTCATTAAGGGACTA
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Coding sequence (CDS) from alignment at H-elongata_contig59416:2970..3511+

>mRNA_H-elongata_contig59416.13454.1 ID=mRNA_H-elongata_contig59416.13454.1|Name=mRNA_H-elongata_contig59416.13454.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig59416:2970..3511+ (Himanthalia elongata Himel1 dioecious)
AGCGTACTAACCGTCCATGATGTAACGAACATCTACTATATACCAACTAT
ACTGGTCCAGCAGAGCGTACTAACCGTCCATGATGTAACGAACATCTACT
ATATACCAACTATACTGGTCCAGCAGAACCTGCACCACCTCTTCAAGAAA
CAGCTTGGATTCTCAAGTATGTCCCCCCCCAACATGAGCATGTGGACCCG
CCTCGCGACCGCCGTGGACCAGTTAGTGACCCCTGTTCGAATAGCCATTG
TGGGTAAATACACGGGTCTCCAAGACTCGTATTTGAGTGTCATTAAGGGA
CTAAACCTGCACCACCTCTTCAAGAAACAGCTTGGATTCTCAAGTATGTC
CCCCCCCAACATGAGCATGTGGACCCGCCTCGCGACCGCCGTGGACCAGT
TAGTGACCCCTGTTCGAATAGCCATTGTGGGTAAATACACGGGTCTCCAA
GACTCGTATTTGAGTGTCATTAAGGGACTA
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