mRNA_H-elongata_contig59406.13453.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59406.13453.1
Unique NamemRNA_H-elongata_contig59406.13453.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59406.13453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59406contigH-elongata_contig59406:2033..3012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size982
Cds size591
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.0939088-UTR-H-elongata_contig59406:2032..24211622930963.0939088-UTR-H-elongata_contig59406:2032..2421Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59406 2033..2421 +
1691679642.288396-UTR-H-elongata_contig59406:2032..24211691679642.288396-UTR-H-elongata_contig59406:2032..2421Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59406 2033..2421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.1108654-CDS-H-elongata_contig59406:2421..30121622930963.1108654-CDS-H-elongata_contig59406:2421..3012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59406 2422..3012 +
1691679642.2994752-CDS-H-elongata_contig59406:2421..30121691679642.2994752-CDS-H-elongata_contig59406:2421..3012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59406 2422..3012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59406.13453.1prot_H-elongata_contig59406.13453.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59406 2422..3012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59406.13453.1

>prot_H-elongata_contig59406.13453.1 ID=prot_H-elongata_contig59406.13453.1|Name=mRNA_H-elongata_contig59406.13453.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
MMSMLRTRALHTHRMTSPELPWQCLPPRRCQHASTLPFAPLSAHSAHGLH
RLTGHCSLSHASFAISRRSLVPLLGSHRIRSSQQARTPPPFSGREVGPTP
QSHQRGIKCPVWTAPRRRRCLFQVCSRNPERLLLSRWRPLDPIDFLCCPF
WRGCPLGDAPESIRDCLFWLIRALLPEKSKRMCRKKLLEWRFPRDSV
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mRNA from alignment at H-elongata_contig59406:2033..3012+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59406.13453.1 ID=mRNA_H-elongata_contig59406.13453.1|Name=mRNA_H-elongata_contig59406.13453.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=980bp|location=Sequence derived from alignment at H-elongata_contig59406:2033..3012+ (Himanthalia elongata Himel1 dioecious)
ACCGTAGTTCCGTGGGAACTCCAATAATTCTGCTCTGCTTGACACATAAT
TGAGACATCAACACTATCCCTTCCATCCCCCTTCAATTATTCATAAGGAC
GGGGAATTTTGACTCAACAGCGAATTTCCACATATATTTCATGTATTTTA
TGTCATTTCATTCCAAGGTGCGTAGGTTATCTGTGTGAGCTTTGGATTCA
TATCGCCACACTCAGCGACACTGTCAGTCCGTCCGTAGAAGTCGCCCAGT
TACCCTCAGCCACTCACTGCCGTATCACTAATGCGATCATCACCACAAGA
CACGCCGTCATCGTCGCTAACGCTAACATCTCCCAGATCGTCTTCGTGCT
CGACGCCGTTTCCGGGAGCGAGTGCTCCGCACACCCTACATGATGTCGAT
GCTGAGGACCCGCGCACTCCACACACATCGCATGACCAGTCCAGAGCTAC
CTTGGCAATGCCTACCGCCTCGCCGGTGCCAACATGCTTCGACTCTGCCG
TTCGCGCCACTTTCTGCACATTCCGCACATGGTCTTCACCGCCTGACGGG
ACATTGTTCCCTGTCCCATGCATCATTTGCGATCTCCCGCCGATCTCTAG
TCCCTCTGCTAGGTTCACATCGGATCCGCTCGAGCCAACAAGCGCGGACG
CCCCCTCCGTTTTCCGGGCGTGAGGTTGGTCCGACGCCTCAAAGCCACCA
AAGAGGGATAAAATGTCCTGTGTGGACCGCACCTCGCCGTCGTCGTTGTC
TCTTCCAGGTCTGTTCTCGGAATCCTGAGCGTCTCTTGCTCTCTCGGTGG
CGCCCTCTGGACCCCATTGATTTTCTCTGTTGCCCTTTCTGGCGGGGCTG
TCCCTTGGGGGATGCTCCGGAGAGCATCCGCGACTGCCTATTTTGGCTGA
TCCGTGCGCTTCTCCCTGAGAAGTCAAAAAGGATGTGCCGCAAGAAATTA
CTCGAGTGGCGCTTTCCCCGCGATTCCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig59406:2033..3012+

>mRNA_H-elongata_contig59406.13453.1 ID=mRNA_H-elongata_contig59406.13453.1|Name=mRNA_H-elongata_contig59406.13453.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig59406:2033..3012+ (Himanthalia elongata Himel1 dioecious)
ATGATGTCGATGCTGAGGACCCGCGCACTCCACACACATCGCATGACCAG
TCCAGAGCTACCTTGGCAATGCCTACCGCCTCGCCGGTGCCAACATGCTT
CGACTCTGCCGTTCGCGCCACTTTCTGCACATTCCGCACATGGTCTTCAC
CGCCTGACGGGACATTGTTCCCTGTCCCATGCATCATTTGCGATCTCCCG
CCGATCTCTAGTCCCTCTGCTAGGTTCACATCGGATCCGCTCGAGCCAAC
AAGCGCGGACGCCCCCTCCGTTTTCCGGGCGTGAGGTTGGTCCGACGCCT
CAAAGCCACCAAAGAGGGATAAAATGTCCTGTGTGGACCGCACCTCGCCG
TCGTCGTTGTCTCTTCCAGGTCTGTTCTCGGAATCCTGAGCGTCTCTTGC
TCTCTCGGTGGCGCCCTCTGGACCCCATTGATTTTCTCTGTTGCCCTTTC
TGGCGGGGCTGTCCCTTGGGGGATGCTCCGGAGAGCATCCGCGACTGCCT
ATTTTGGCTGATCCGTGCGCTTCTCCCTGAGAAGTCAAAAAGGATGTGCC
GCAAGAAATTACTCGAGTGGCGCTTTCCCCGCGATTCCGTGATGATGTCG
ATGCTGAGGACCCGCGCACTCCACACACATCGCATGACCAGTCCAGAGCT
ACCTTGGCAATGCCTACCGCCTCGCCGGTGCCAACATGCTTCGACTCTGC
CGTTCGCGCCACTTTCTGCACATTCCGCACATGGTCTTCACCGCCTGACG
GGACATTGTTCCCTGTCCCATGCATCATTTGCGATCTCCCGCCGATCTCT
AGTCCCTCTGCTAGGTTCACATCGGATCCGCTCGAGCCAACAAGCGCGGA
CGCCCCCTCCGTTTTCCGGGCGTGAGGTTGGTCCGACGCCTCAAAGCCAC
CAAAGAGGGATAAAATGTCCTGTGTGGACCGCACCTCGCCGTCGTCGTTG
TCTCTTCCAGGTCTGTTCTCGGAATCCTGAGCGTCTCTTGCTCTCTCGGT
GGCGCCCTCTGGACCCCATTGATTTTCTCTGTTGCCCTTTCTGGCGGGGC
TGTCCCTTGGGGGATGCTCCGGAGAGCATCCGCGACTGCCTATTTTGGCT
GATCCGTGCGCTTCTCCCTGAGAAGTCAAAAAGGATGTGCCGCAAGAAAT
TACTCGAGTGGCGCTTTCCCCGCGATTCCGTG
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