mRNA_H-elongata_contig59378.13450.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59378.13450.1
Unique NamemRNA_H-elongata_contig59378.13450.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: D8LS75_ECTSI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS75_ECTSI)

HSP 1 Score: 366 bits (939), Expect = 2.730e-123
Identity = 178/226 (78.76%), Postives = 207/226 (91.59%), Query Frame = 1
Query:    1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEEREPDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIKIEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVEV 678
            +YRPRVRVVRVTGR+MC+AYF KNREKVSNLRSD+LAL+L+HANVFAGCQALVLDTCMGVVTAA+LERM C+GR+ ALYAQSQPSMDAVRKFDH E +L++CLLPLHTSELG+LS+PE ERE DP++DGG GD+RTEEEAL EY T MD+HGV EKDR  +IE+K+ARMRRN+ +P PRQVRDWLRQGCDCLVIA K+DP+ AV+AMLPHL+PSRPF +YSEF+EV
Sbjct:  177 KYRPRVRVVRVTGRTMCDAYFAKNREKVSNLRSDALALVLTHANVFAGCQALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKNLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPHLTPSRPFAIYSEFIEV 402          
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: A0A7S2FBR9_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBR9_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.570e-45
Identity = 96/220 (43.64%), Postives = 139/220 (63.18%), Query Frame = 1
Query:    1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEEREPDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIK---IEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPF 651
            ++ PRVR++R    S+C  YFLKN EKV+NLR DSLA +L+++NV+AGCQALV DTCMGVV AA  +R+   GR++A +A  Q   DA+++F+  E      ++P HT+E+GKL  PEEE EPD   +      R     ++ Y  F+ E   +  D + K   ++++ AR+RR   KP P  VR+WLR   D L+IA +++PL  +  +LP L+PS PF
Sbjct:   19 KHAPRVRLLRCDVASVCETYFLKNTEKVNNLRPDSLAQVLAYSNVYAGCQALVFDTCMGVVVAACADRLDGHGRILAAFAGQQHHFDAMKRFNFSERQEA-VVVPFHTTEIGKLVEPEEE-EPDESPEAVEARARV---LIDTYPEFVVEKMATLTDEAKKNEYLQRREARIRRQCAKPLPGSVRNWLRHTSDSLIIATEFNPLAVLLELLPLLAPSAPF 233          
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: A0A7S2DYA4_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DYA4_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.340e-39
Identity = 89/228 (39.04%), Postives = 138/228 (60.53%), Query Frame = 1
Query:    1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEEREPDPLEDGGVGDTRTEEEALEEYNTFMDEHGVS---EKDRSIKIEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
            ++ PRVR+V     S+C+ Y+ KNRE+VSNLRSDSLA +L++ NVFAG   LV DT MG+V ++++ER+   GR++A YA  Q + DAV+  +         L+P HTSEL K+         + ++D         ++ +EE   F+ E   S   E +R+  ++++  R++R   +P P  VR+WLRQ CD L+IA ++ PLT +  +LP L+ S PF ++ EF+E
Sbjct:  164 KHTPRVRLVLCEAESVCDTYYQKNRERVSNLRSDSLAQILAYGNVFAGGNVLVFDTVMGLVVSSVVERLGGHGRLLAAYAGKQAAFDAVKHMNFTSRQS-SVLVPFHTSELAKVRGDAAMAAFEDVDDSPEAVAARAKKLIEERPAFVTEKLASLTEESERAAYLKRRADRIKRQTARPSPGTVRNWLRQQCDSLIIATEFHPLTVLLELLPVLAFSAPFVIFCEFLE 390          
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: A0A662WG54_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WG54_9STRA)

HSP 1 Score: 140 bits (353), Expect = 5.250e-36
Identity = 92/230 (40.00%), Postives = 123/230 (53.48%), Query Frame = 1
Query:    1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHT---SELGKLSVPEEER-EPDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIK-IEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
            +Y PRVR +R T  S+C  Y LKN  K+ NLR DSL  +L +AN+FAG Q LV+DTCMG+VT AI ER    GR++  Y   QP+ D +R+F+       R L  +H     E+  L +PEE   EP  +   G+     E  A E    F             + +EKKI R        P   +R W+R+  D LVIA  YDP   + A+LP+L  S+PF +YSEF+E
Sbjct:   99 KYMPRVRFLRCTAESLCRTYRLKNPAKICNLREDSLGQMLVYANIFAGGQVLVVDTCMGLVTGAIAERQGGSGRILCPYDGQQPAADILRRFNFGTQCYKRTLESIHYMPFKEIRLLELPEETVVEPPKVARDGLTPEERERMATERAKGFXXXXXXXXXXXXXRRLEKKIQRQ-------PSATIRQWVRETSDSLVIAANYDPEQVLLALLPYLGRSKPFVIYSEFLE 321          
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: A0A7S2RMG0_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMG0_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.610e-35
Identity = 85/225 (37.78%), Postives = 129/225 (57.33%), Query Frame = 1
Query:   19 RVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEEREPDPLEDGGVGDTRTEEEALEEYNTFMD------EHGVSEKDRSIKIEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
            RV+R  G S+C +Y++K  E+V NLR D+LA +L++ NVFAG Q L +D+CMGVV A+I+ER+   GR +  +A+S P++DAV KF+     ++  L+  HTSE GKL+ PE      P  D        E +  +   T  D      +   +E+D+   +  +  R+RR   KP P  +R+W+R   D L+IA  Y P T    ++  L P+ PF V+SE++E
Sbjct:    1 RVLRCEGASVCESYYMKFPERVCNLRPDALAQILAYGNVFAGAQILCMDSCMGVVAASIVERLGGYGRCLNAFAESNPNLDAVNKFNFSPR-MLSSLVSFHTSEFGKLATPEL-----PDADLDHSSEAVERKIRDSLATMPDLTKQKLQSLKTEEDKQAFLAAREKRIRRACAKPQPGVIRNWIRAQSDSLIIATAYHPKTVFFELVQWLKPACPFVVFSEYIE 219          
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: W2PH38_PHYPN (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PH38_PHYPN)

HSP 1 Score: 138 bits (347), Expect = 4.260e-35
Identity = 89/229 (38.86%), Postives = 121/229 (52.84%), Query Frame = 1
Query:    1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEERE----PDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIKIEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
            +Y PRVR +R T  S+C  Y LKN  K+ NLR DSL  +L + N+FAG Q LV+DTCMG+VT AI ER    GR+I  Y   QP+ D +R+F+  +    R L  +H     ++ + E E E    P  +   G+     E+ A E    F               EKK  R +    +  P  +R+W R+  D LVIA  YDP   + A+LP+L  S+PF VYSEF+E
Sbjct:  107 KYMPRVRFLRCTAESLCRTYRLKNPAKICNLREDSLGQILVYGNIFAGGQVLVVDTCMGLVTGAIAERQGGSGRIICPYEGQQPAADILRRFNFDK----RTLESIHYMPFKQVRLLEMEEEDVVEPAKVARDGLTPEEREQLAAERAKNFTPXXXXRY------AEKKARREQTKLFRQKPSTIREWAREKSDSLVIAASYDPEEVLMALLPYLGRSKPFVVYSEFLE 325          
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: G4YI76_PHYSP (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=4 Tax=Phytophthora TaxID=4783 RepID=G4YI76_PHYSP)

HSP 1 Score: 137 bits (346), Expect = 5.750e-35
Identity = 91/229 (39.74%), Postives = 123/229 (53.71%), Query Frame = 1
Query:    1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHT---SELGKLSVPEEER-EPDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIKIEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
            +Y PRVR +R T  S+C  Y LKN  K+ NLR DSL  +L ++N+FAG Q LV+DTCMG+VT AI ER    GR+I  Y   QP+ D +R+F+  +    R L  +H     ++  L + EEE  EP  +   G+     E  A E    F  +       +    EKK  R      +  P  +R W R+  D LVIA  YDP   + A+LP+L  S+PF VYSEF+E
Sbjct:  158 KYMPRVRFLRCTAESLCRTYRLKNPAKICNLREDSLGQVLVYSNIFAGGQVLVVDTCMGLVTGAIAERQGGSGRIICPYEGQQPAADILRRFNFDK----RTLESIHYMPFKQVRMLELKEEEVVEPPKVARDGLTPEERERLAAERAKNFTPQQ------QKRYAEKKARRADTKLNRQSPSTIRQWAREKSDSLVIAANYDPEEVLMALLPYLGRSKPFVVYSEFLE 376          
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: A0A0W8CAK1_PHYNI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=14 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CAK1_PHYNI)

HSP 1 Score: 138 bits (347), Expect = 8.910e-35
Identity = 89/229 (38.86%), Postives = 121/229 (52.84%), Query Frame = 1
Query:    1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEERE----PDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIKIEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
            +Y PRVR +R T  S+C  Y LKN  K+ NLR DSL  +L + N+FAG Q LV+DTCMG+VT AI ER    GR+I  Y   QP+ D +R+F+  +    R L  +H     ++ + E E E    P  +   G+     E+ A E    F               EKK  R +    +  P  +R+W R+  D LVIA  YDP   + A+LP+L  S+PF VYSEF+E
Sbjct:  165 KYMPRVRFLRCTAESLCRTYRLKNPAKICNLREDSLGQILVYGNIFAGGQVLVVDTCMGLVTGAIAERQGGSGRIICPYEGQQPAADILRRFNFDK----RTLESIHYMPFKQVRLLEMEEEDVVEPAKVARDGLTPEEREQLAAERAKNFTPXXXXRY------AEKKARREQTKLFRQKPSTIREWAREKSDSLVIAANYDPEEVLMALLPYLGRSKPFVVYSEFLE 383          
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: M4C2Z9_HYAAE (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C2Z9_HYAAE)

HSP 1 Score: 138 bits (347), Expect = 1.700e-34
Identity = 88/227 (38.77%), Postives = 125/227 (55.07%), Query Frame = 1
Query:    1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEE-REPDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIKIEK-KIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
            +Y PRVR +R T  S+C  Y LKN  K+ NLR D+L  +L + N+FAG Q LV+DTCMG+VT A+ ER    GR+I  Y   QPS D +R+F+  +  L   +  L   ++  L + EEE  EP  +   G+   + E  A E    F  E      D+  + E+ K++  +       P  +R W R+  D LVIA  Y+P   + A+LP+L  S+PF VYSEF+E
Sbjct:  160 KYMPRVRFLRCTAESLCRTYRLKNPSKICNLREDTLGQILVYGNIFAGAQVLVVDTCMGLVTGAVAERQGGSGRLICPYEGQQPSADILRRFNFDKLTL-ESIHYLPFKQVRLLGLKEEEVLEPKKVARDGLSQEQRERLAAERAKNFTPEQQKHYADKKARREETKLSHQK-------PSVIRQWAREKSDSLVIAANYNPEAILMALLPYLGRSKPFVVYSEFLE 378          
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: A0A5D6XMH0_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMH0_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.590e-33
Identity = 90/226 (39.82%), Postives = 127/226 (56.19%), Query Frame = 1
Query:    1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEEREPDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIKIEKKIARMRRNRMKPPPRQV-RDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
            +Y PRV+ ++ T  S+C  Y LKN  K  NLR DSL  +L +ANVFAG Q LV+DTCMG+V  AI ER A  GR++A Y   QPS+D +R+F+  +      +      ++  L+V E +    PL     G T  E EA       +        D+  + E K AR + N++K  P  V R+W+R   D LV+A  YDP   + A+LP+L+ S+PF VYSE++E
Sbjct:  160 KYMPRVQFLKCTAESLCRTYRLKNPLKTCNLREDSLGQMLVYANVFAGAQVLVVDTCMGLVIGAIAERQAGHGRILAGYEGQQPSVDILRRFNFDKRTH-ESIKYFSFKDVANLAVLETDVVEPPLAPPRDGLTPAEREAA-----MVARLAGFTADQRKRYEAKKARNQVNKVKREPAAVVREWVRAKSDALVVASSYDPERVLLALLPYLACSKPFVVYSEYLE 379          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS75_ECTSI2.730e-12378.76tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A7S2FBR9_9STRA1.570e-4543.64tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A7S2DYA4_9STRA1.340e-3939.04tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A662WG54_9STRA5.250e-3640.00tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A7S2RMG0_9STRA2.610e-3537.78tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
W2PH38_PHYPN4.260e-3538.86tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
G4YI76_PHYSP5.750e-3539.74tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A0W8CAK1_PHYNI8.910e-3538.86tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
M4C2Z9_HYAAE1.700e-3438.77tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A5D6XMH0_9STRA2.590e-3339.82tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59378contigH-elongata_contig59378:451..3589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score370.2
Seed ortholog evalue7.1e-100
Seed eggNOG ortholog2880.D8LS75
Preferred nameTRMT6
KEGG rclassRC00017,RC02950
KEGG koko:K03256,ko:K08730
KEGG ReactionR07376
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
GOsGO:0000049,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0007154,GO:0007267,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0023052,GO:0030154,GO:0030488,GO:0031515,GO:0031974,GO:0031981,GO:0032259,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045168,GO:0046331,GO:0046483,GO:0048869,GO:0070013,GO:0071704,GO:0080009,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990234
EggNOG free text desc.tRNA methylation
EggNOG OGsKOG1416@1,KOG1416@2759
EC2.7.8.29
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionEukaryotic initiation factor 3, gamma subunit
Ec32 orthologEc-12_004570.1
Exons6
Model size678
Cds size678
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59378.13450.1prot_H-elongata_contig59378.13450.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59378 451..3589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930962.7437727-CDS-H-elongata_contig59378:450..5881622930962.7437727-CDS-H-elongata_contig59378:450..588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59378 451..588 -
1691679642.1061578-CDS-H-elongata_contig59378:450..5881691679642.1061578-CDS-H-elongata_contig59378:450..588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59378 451..588 -
1622930962.7624588-CDS-H-elongata_contig59378:940..10121622930962.7624588-CDS-H-elongata_contig59378:940..1012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59378 941..1012 -
1691679642.1235197-CDS-H-elongata_contig59378:940..10121691679642.1235197-CDS-H-elongata_contig59378:940..1012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59378 941..1012 -
1622930962.7799065-CDS-H-elongata_contig59378:1514..17181622930962.7799065-CDS-H-elongata_contig59378:1514..1718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59378 1515..1718 -
1691679642.1375456-CDS-H-elongata_contig59378:1514..17181691679642.1375456-CDS-H-elongata_contig59378:1514..1718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59378 1515..1718 -
1622930962.7992482-CDS-H-elongata_contig59378:2197..23111622930962.7992482-CDS-H-elongata_contig59378:2197..2311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59378 2198..2311 -
1691679642.1490567-CDS-H-elongata_contig59378:2197..23111691679642.1490567-CDS-H-elongata_contig59378:2197..2311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59378 2198..2311 -
1622930962.8119657-CDS-H-elongata_contig59378:2628..26921622930962.8119657-CDS-H-elongata_contig59378:2628..2692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59378 2629..2692 -
1691679642.1605039-CDS-H-elongata_contig59378:2628..26921691679642.1605039-CDS-H-elongata_contig59378:2628..2692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59378 2629..2692 -
1622930962.829208-CDS-H-elongata_contig59378:3503..35891622930962.829208-CDS-H-elongata_contig59378:3503..3589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59378 3504..3589 -
1691679642.178845-CDS-H-elongata_contig59378:3503..35891691679642.178845-CDS-H-elongata_contig59378:3503..3589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59378 3504..3589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59378.13450.1

>prot_H-elongata_contig59378.13450.1 ID=prot_H-elongata_contig59378.13450.1|Name=mRNA_H-elongata_contig59378.13450.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp
RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQ
ALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLV
RCLLPLHTSELGKLSVPEEEREPDPLEDGGVGDTRTEEEALEEYNTFMDE
HGVSEKDRSIKIEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDP
LTAVEAMLPHLSPSRPFTVYSEFVEV
back to top

mRNA from alignment at H-elongata_contig59378:451..3589-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59378.13450.1 ID=mRNA_H-elongata_contig59378.13450.1|Name=mRNA_H-elongata_contig59378.13450.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3139bp|location=Sequence derived from alignment at H-elongata_contig59378:451..3589- (Himanthalia elongata Himel1 dioecious)
AGGTACCGACCGCGCGTCCGTGTTGTTCGAGTCACCGGCCGCTCCATGTG CAACGCGTATTTTCTCAAGAACCGAGAGAAAGTCAGGTACAGCCCACACC GTACTACTGGGATAGTAGTACTGGGAGAGTAGTGTTGTGCAGTACCACGT ACACGTGAAAAGACACGAAAGCTGGGTAAACGGGGCCCCACATCACTTCT ACAGTCGAGCTATTTCATTAATAGCAAAATTATTTTTATATATGTATCTG TATATATATAAAATTTAGGTTCATCAGCAGCTACTGCTGTAAGGAATGTT AGTGCCCACAGCAACAGCAGGAGCGATAATGTAGTGTAGTCTAGTATAAT GTGTAGTGTAATGTAACGGTAGTGTAGTGCAGTGTGGTGTAGTGTCCTGT GCACTATACCTCCAAAGCAGTTTCGACGTTAGCGCTGAGGTGTAGATAGG GCGCGATGTTGGGGGCGGAAGTGCGCTAGATGTGTTTTGATGATGATCGT CTGCGGCTTCAATAAAGCCTTCCCCCCCCCCCCCCCTCCACCTTCCAAGG CCAGCGTATTTCAATGAGTGTCTGGGGGTTCTTTAAGCTAAAGTTTGCAG TGGGTTTTCGCCGGTAGCTCTTCCTTGCTGTTCCAGTACCATCCACTGAT GTTACTGATGTTGTATCCGAGTCATAATCATATCCGCGGCATGAATATCC TCGCTTGTGTTGATGAAGAGCCCTGAAGCTAGAACTGGAGCCACACATTC AGCACAATGAAACGATGGTGGTTATTCCTCCCTGGCATCGCAGTGCAGTG CAGCTGTTTGTCACTGTTTTTCCCACAACTCTTCGGTTCGTCCTGACGCG TAACTACCGCTCTTGCACCTCGCCAAAATCCATACGGATGCCAACAGCAA TCTCCGGAGCGACTCGCTCGCCCTCCTACTCTCCCACGCCAACGTCTTCG CCGGGTGCCAGGTGGGGATGTCGGCGGAGGGGAGCAGGGTTCTCCTCCGC GCGTAGCCGTATGTGGTATCTCCATACATCATGGGATGTCACGCAACGGT CACGGCGCTTGATTTTTGCCGAAATTGCACCCATGGATTCGATGCCTCGG GGTCGTTTTTTTAGCTGGCGCACGTGCTATCGAAGCTGTCGTGCCGTGGG ATGTCTGACTACCTAATCCTAGAAGAACAAGGGGAGGTTAAGCCCCCTCT TTCTCCCACCCTGTTGTGATGGCTACCCTTAACTTAGTGTTATAAATGTA TTATGTGTGTCTGGGGGGGCATTCGTAGGCGCTGGTGCTGGACACGTGCA TGGGCGTCGTAACGGCGGCAATACTCGAGCGCATGGCATGCAGGGGAAGG GTAATCGCCCTTTACGCGCAGAGCCAGCCCAGCATGGATGCGGTGAGCCA CCCCGATGAGAAACAGCAACAGTATTTTTTTGTCCTCCGAAGAAAGTAAC CTGAGCATCGTACTCGAATCCGAAAAGCAAGGAACATTCGAATTTGTGTC GCTGGTCGGTTGAGGTAGAAATCGAGGTACTGCATGCAGTCATTACATCT TGGTGGAACGAACTGCATTGGAGTGGGGAAATAAGTGAACCTTCCTGACT GCAACATTCTTCCATTTCATCACACAGAGAAGGTGCTAGTGGTCGTTTTC TCCTCAATCGCCGATTTCGCGGGTCATCGAGCGATGTTTGCTATCTTGCA CAGCCGCAGTGCTGGTAACGGGTCGGCGTGATGGGGATAAGAAGAGGGAT GCCCGCCGCCGCGCTACGGAAAATCATGCTTGTACACTCTCTCTTTCTCT CTCACGCACACACAAACAAAAGAGAAGCAGCGAATGCCCCATTCCTCCGA CTCTCGTGCTTCCGCGTATAGGTGCGGAAGTTCGATCACCCCGAGGCCGA CCTGGTCCGATGCCTGCTGCCGCTGCACACGAGCGAGCTCGGGAAATTGT CCGTTCCGGAGGAGGAGCGTGAGCCCGACCCGCTTGAGGACGGTGGGGTA GGGGACACTCGGACGGAGGAAGAAGCACTCGAGGAGTACAATACCTTTAT GGATGAGCATGGCGTGTCCGAGAAGGTGAGGCACTTCGATGCGCCGTGTC GCAAAGTCAGTGCAACCAGAGTTCGTGCCGCGCTCGTGTTTGAATAAAAT GCGTTTTTTCTGCCGTTAGCGATTGGTGTGGCTAGCGCGGTAGTTTAGGG GAGGGGTGTTAAGGCGACAAGTACAGTGTCGCCGTTTGGCTGCTACGGGG CGTGCGTGCTGTGGGTTTGGCACAGCGTTGAAATACGGTCGTGCGTGCTG TGTTATGGTGGTCCTGTCCTTGGCGCATGCTGATGCTTTTACTTTGTCTG AAGCGACGAGAGATCGAGCGGCAGCAGCACGGAAGTTGTGAAAATTACAG CAGCAGTGGTTTCTAGGTGGTATCATTGATATCTATGAGTCGTGGTGGCG AAGCTCTCCCCCCCCCCCCCCTCCCCGTGATCAAACTATTCCTCATGACA TGCGGACTCCGTAATGTCGTCCTCCCCCTTTCTTGTCGTCGTCGTCCGTA ACGGTGTAACGTGTAACGCGCGGCTAGGACCGATCGATCAAGATCGAGAA GAAGATTGCCAGGATGCGACGGAACAGGATGAAGCCACCTCCCCGGCAGG TGCGCGCCCGTCATGCGTGCAGACAACATTTTGCACTCTGGTTCCCGTTC TGTGAAAATTGCGTTTGTTTGTCGTATTTTGCCCCATAACGATGGGAGTT CTAAGAGGAAGGCGGCGTGTGAAATATCGTTACTGTTTTTCCTGGCGTTG GGCTCTTTTCCATGCCCCAATCCACAGTAAGCAAGGGTTCGCCCGCAAAC GCTGTGGGCCGTATTGCCCATAAAGGTAGATACTCTACATAATTTGATCG GCGACGTGCTCTCAACGTTCGTCGCGATGATTGTCTGGCGCTTTTCTCCG CCCTCATTTCCCATCCTTAAGTTTGGCTGTTTTTGTTTTTGCATGTTACA GGTTCGGGACTGGCTTCGTCAGGGATGCGATTGTCTTGTTATCGCTGGCA AGTACGACCCGCTCACGGCCGTAGAGGCCATGTTGCCACACCTCAGCCCC TCCAGGCCTTTCACGGTGTACTCGGAGTTCGTGGAGGTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig59378:451..3589-

>mRNA_H-elongata_contig59378.13450.1 ID=mRNA_H-elongata_contig59378.13450.1|Name=mRNA_H-elongata_contig59378.13450.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at H-elongata_contig59378:451..3589- (Himanthalia elongata Himel1 dioecious)
AGGTACCGACCGCGCGTCCGTGTTGTTCGAGTCACCGGCCGCTCCATGTG
CAACGCGTATTTTCTCAAGAACCGAGAGAAAGTCAGAGGTACCGACCGCG
CGTCCGTGTTGTTCGAGTCACCGGCCGCTCCATGTGCAACGCGTATTTTC
TCAAGAACCGAGAGAAAGTCAGCAATCTCCGGAGCGACTCGCTCGCCCTC
CTACTCTCCCACGCCAACGTCTTCGCCGGGTGCCAGCAATCTCCGGAGCG
ACTCGCTCGCCCTCCTACTCTCCCACGCCAACGTCTTCGCCGGGTGCCAG
GCGCTGGTGCTGGACACGTGCATGGGCGTCGTAACGGCGGCAATACTCGA
GCGCATGGCATGCAGGGGAAGGGTAATCGCCCTTTACGCGCAGAGCCAGC
CCAGCATGGATGCGGCGCTGGTGCTGGACACGTGCATGGGCGTCGTAACG
GCGGCAATACTCGAGCGCATGGCATGCAGGGGAAGGGTAATCGCCCTTTA
CGCGCAGAGCCAGCCCAGCATGGATGCGGTGCGGAAGTTCGATCACCCCG
AGGCCGACCTGGTCCGATGCCTGCTGCCGCTGCACACGAGCGAGCTCGGG
AAATTGTCCGTTCCGGAGGAGGAGCGTGAGCCCGACCCGCTTGAGGACGG
TGGGGTAGGGGACACTCGGACGGAGGAAGAAGCACTCGAGGAGTACAATA
CCTTTATGGATGAGCATGGCGTGTCCGAGAAGGTGCGGAAGTTCGATCAC
CCCGAGGCCGACCTGGTCCGATGCCTGCTGCCGCTGCACACGAGCGAGCT
CGGGAAATTGTCCGTTCCGGAGGAGGAGCGTGAGCCCGACCCGCTTGAGG
ACGGTGGGGTAGGGGACACTCGGACGGAGGAAGAAGCACTCGAGGAGTAC
AATACCTTTATGGATGAGCATGGCGTGTCCGAGAAGGACCGATCGATCAA
GATCGAGAAGAAGATTGCCAGGATGCGACGGAACAGGATGAAGCCACCTC
CCCGGCAGGACCGATCGATCAAGATCGAGAAGAAGATTGCCAGGATGCGA
CGGAACAGGATGAAGCCACCTCCCCGGCAGGTTCGGGACTGGCTTCGTCA
GGGATGCGATTGTCTTGTTATCGCTGGCAAGTACGACCCGCTCACGGCCG
TAGAGGCCATGTTGCCACACCTCAGCCCCTCCAGGCCTTTCACGGTGTAC
TCGGAGTTCGTGGAGGTAGTTCGGGACTGGCTTCGTCAGGGATGCGATTG
TCTTGTTATCGCTGGCAAGTACGACCCGCTCACGGCCGTAGAGGCCATGT
TGCCACACCTCAGCCCCTCCAGGCCTTTCACGGTGTACTCGGAGTTCGTG
GAGGTA
back to top