mRNA_H-elongata_contig59378.13450.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: D8LS75_ECTSI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS75_ECTSI) HSP 1 Score: 366 bits (939), Expect = 2.730e-123 Identity = 178/226 (78.76%), Postives = 207/226 (91.59%), Query Frame = 1
Query: 1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEEREPDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIKIEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVEV 678
+YRPRVRVVRVTGR+MC+AYF KNREKVSNLRSD+LAL+L+HANVFAGCQALVLDTCMGVVTAA+LERM C+GR+ ALYAQSQPSMDAVRKFDH E +L++CLLPLHTSELG+LS+PE ERE DP++DGG GD+RTEEEAL EY T MD+HGV EKDR +IE+K+ARMRRN+ +P PRQVRDWLRQGCDCLVIA K+DP+ AV+AMLPHL+PSRPF +YSEF+EV
Sbjct: 177 KYRPRVRVVRVTGRTMCDAYFAKNREKVSNLRSDALALVLTHANVFAGCQALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKNLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTEEEALAEYRTVMDDHGVPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPHLTPSRPFAIYSEFIEV 402
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: A0A7S2FBR9_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBR9_9STRA) HSP 1 Score: 160 bits (405), Expect = 1.570e-45 Identity = 96/220 (43.64%), Postives = 139/220 (63.18%), Query Frame = 1
Query: 1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEEREPDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIK---IEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPF 651
++ PRVR++R S+C YFLKN EKV+NLR DSLA +L+++NV+AGCQALV DTCMGVV AA +R+ GR++A +A Q DA+++F+ E ++P HT+E+GKL PEEE EPD + R ++ Y F+ E + D + K ++++ AR+RR KP P VR+WLR D L+IA +++PL + +LP L+PS PF
Sbjct: 19 KHAPRVRLLRCDVASVCETYFLKNTEKVNNLRPDSLAQVLAYSNVYAGCQALVFDTCMGVVVAACADRLDGHGRILAAFAGQQHHFDAMKRFNFSERQEA-VVVPFHTTEIGKLVEPEEE-EPDESPEAVEARARV---LIDTYPEFVVEKMATLTDEAKKNEYLQRREARIRRQCAKPLPGSVRNWLRHTSDSLIIATEFNPLAVLLELLPLLAPSAPF 233
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: A0A7S2DYA4_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DYA4_9STRA) HSP 1 Score: 151 bits (381), Expect = 1.340e-39 Identity = 89/228 (39.04%), Postives = 138/228 (60.53%), Query Frame = 1
Query: 1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEEREPDPLEDGGVGDTRTEEEALEEYNTFMDEHGVS---EKDRSIKIEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
++ PRVR+V S+C+ Y+ KNRE+VSNLRSDSLA +L++ NVFAG LV DT MG+V ++++ER+ GR++A YA Q + DAV+ + L+P HTSEL K+ + ++D ++ +EE F+ E S E +R+ ++++ R++R +P P VR+WLRQ CD L+IA ++ PLT + +LP L+ S PF ++ EF+E
Sbjct: 164 KHTPRVRLVLCEAESVCDTYYQKNRERVSNLRSDSLAQILAYGNVFAGGNVLVFDTVMGLVVSSVVERLGGHGRLLAAYAGKQAAFDAVKHMNFTSRQS-SVLVPFHTSELAKVRGDAAMAAFEDVDDSPEAVAARAKKLIEERPAFVTEKLASLTEESERAAYLKRRADRIKRQTARPSPGTVRNWLRQQCDSLIIATEFHPLTVLLELLPVLAFSAPFVIFCEFLE 390
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: A0A662WG54_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WG54_9STRA) HSP 1 Score: 140 bits (353), Expect = 5.250e-36 Identity = 92/230 (40.00%), Postives = 123/230 (53.48%), Query Frame = 1
Query: 1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHT---SELGKLSVPEEER-EPDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIK-IEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
+Y PRVR +R T S+C Y LKN K+ NLR DSL +L +AN+FAG Q LV+DTCMG+VT AI ER GR++ Y QP+ D +R+F+ R L +H E+ L +PEE EP + G+ E A E F + +EKKI R P +R W+R+ D LVIA YDP + A+LP+L S+PF +YSEF+E
Sbjct: 99 KYMPRVRFLRCTAESLCRTYRLKNPAKICNLREDSLGQMLVYANIFAGGQVLVVDTCMGLVTGAIAERQGGSGRILCPYDGQQPAADILRRFNFGTQCYKRTLESIHYMPFKEIRLLELPEETVVEPPKVARDGLTPEERERMATERAKGFXXXXXXXXXXXXXRRLEKKIQRQ-------PSATIRQWVRETSDSLVIAANYDPEQVLLALLPYLGRSKPFVIYSEFLE 321
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: A0A7S2RMG0_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMG0_9STRA) HSP 1 Score: 137 bits (345), Expect = 2.610e-35 Identity = 85/225 (37.78%), Postives = 129/225 (57.33%), Query Frame = 1
Query: 19 RVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEEREPDPLEDGGVGDTRTEEEALEEYNTFMD------EHGVSEKDRSIKIEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
RV+R G S+C +Y++K E+V NLR D+LA +L++ NVFAG Q L +D+CMGVV A+I+ER+ GR + +A+S P++DAV KF+ ++ L+ HTSE GKL+ PE P D E + + T D + +E+D+ + + R+RR KP P +R+W+R D L+IA Y P T ++ L P+ PF V+SE++E
Sbjct: 1 RVLRCEGASVCESYYMKFPERVCNLRPDALAQILAYGNVFAGAQILCMDSCMGVVAASIVERLGGYGRCLNAFAESNPNLDAVNKFNFSPR-MLSSLVSFHTSEFGKLATPEL-----PDADLDHSSEAVERKIRDSLATMPDLTKQKLQSLKTEEDKQAFLAAREKRIRRACAKPQPGVIRNWIRAQSDSLIIATAYHPKTVFFELVQWLKPACPFVVFSEYIE 219
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: W2PH38_PHYPN (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PH38_PHYPN) HSP 1 Score: 138 bits (347), Expect = 4.260e-35 Identity = 89/229 (38.86%), Postives = 121/229 (52.84%), Query Frame = 1
Query: 1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEERE----PDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIKIEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
+Y PRVR +R T S+C Y LKN K+ NLR DSL +L + N+FAG Q LV+DTCMG+VT AI ER GR+I Y QP+ D +R+F+ + R L +H ++ + E E E P + G+ E+ A E F EKK R + + P +R+W R+ D LVIA YDP + A+LP+L S+PF VYSEF+E
Sbjct: 107 KYMPRVRFLRCTAESLCRTYRLKNPAKICNLREDSLGQILVYGNIFAGGQVLVVDTCMGLVTGAIAERQGGSGRIICPYEGQQPAADILRRFNFDK----RTLESIHYMPFKQVRLLEMEEEDVVEPAKVARDGLTPEEREQLAAERAKNFTPXXXXRY------AEKKARREQTKLFRQKPSTIREWAREKSDSLVIAASYDPEEVLMALLPYLGRSKPFVVYSEFLE 325
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: G4YI76_PHYSP (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=4 Tax=Phytophthora TaxID=4783 RepID=G4YI76_PHYSP) HSP 1 Score: 137 bits (346), Expect = 5.750e-35 Identity = 91/229 (39.74%), Postives = 123/229 (53.71%), Query Frame = 1
Query: 1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHT---SELGKLSVPEEER-EPDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIKIEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
+Y PRVR +R T S+C Y LKN K+ NLR DSL +L ++N+FAG Q LV+DTCMG+VT AI ER GR+I Y QP+ D +R+F+ + R L +H ++ L + EEE EP + G+ E A E F + + EKK R + P +R W R+ D LVIA YDP + A+LP+L S+PF VYSEF+E
Sbjct: 158 KYMPRVRFLRCTAESLCRTYRLKNPAKICNLREDSLGQVLVYSNIFAGGQVLVVDTCMGLVTGAIAERQGGSGRIICPYEGQQPAADILRRFNFDK----RTLESIHYMPFKQVRMLELKEEEVVEPPKVARDGLTPEERERLAAERAKNFTPQQ------QKRYAEKKARRADTKLNRQSPSTIRQWAREKSDSLVIAANYDPEEVLMALLPYLGRSKPFVVYSEFLE 376
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: A0A0W8CAK1_PHYNI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=14 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CAK1_PHYNI) HSP 1 Score: 138 bits (347), Expect = 8.910e-35 Identity = 89/229 (38.86%), Postives = 121/229 (52.84%), Query Frame = 1
Query: 1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEERE----PDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIKIEKKIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
+Y PRVR +R T S+C Y LKN K+ NLR DSL +L + N+FAG Q LV+DTCMG+VT AI ER GR+I Y QP+ D +R+F+ + R L +H ++ + E E E P + G+ E+ A E F EKK R + + P +R+W R+ D LVIA YDP + A+LP+L S+PF VYSEF+E
Sbjct: 165 KYMPRVRFLRCTAESLCRTYRLKNPAKICNLREDSLGQILVYGNIFAGGQVLVVDTCMGLVTGAIAERQGGSGRIICPYEGQQPAADILRRFNFDK----RTLESIHYMPFKQVRLLEMEEEDVVEPAKVARDGLTPEEREQLAAERAKNFTPXXXXRY------AEKKARREQTKLFRQKPSTIREWAREKSDSLVIAANYDPEEVLMALLPYLGRSKPFVVYSEFLE 383
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: M4C2Z9_HYAAE (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C2Z9_HYAAE) HSP 1 Score: 138 bits (347), Expect = 1.700e-34 Identity = 88/227 (38.77%), Postives = 125/227 (55.07%), Query Frame = 1
Query: 1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEE-REPDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIKIEK-KIARMRRNRMKPPPRQVRDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
+Y PRVR +R T S+C Y LKN K+ NLR D+L +L + N+FAG Q LV+DTCMG+VT A+ ER GR+I Y QPS D +R+F+ + L + L ++ L + EEE EP + G+ + E A E F E D+ + E+ K++ + P +R W R+ D LVIA Y+P + A+LP+L S+PF VYSEF+E
Sbjct: 160 KYMPRVRFLRCTAESLCRTYRLKNPSKICNLREDTLGQILVYGNIFAGAQVLVVDTCMGLVTGAVAERQGGSGRLICPYEGQQPSADILRRFNFDKLTL-ESIHYLPFKQVRLLGLKEEEVLEPKKVARDGLSQEQRERLAAERAKNFTPEQQKHYADKKARREETKLSHQK-------PSVIRQWAREKSDSLVIAANYNPEAILMALLPYLGRSKPFVVYSEFLE 378
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Match: A0A5D6XMH0_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMH0_9STRA) HSP 1 Score: 134 bits (337), Expect = 2.590e-33 Identity = 90/226 (39.82%), Postives = 127/226 (56.19%), Query Frame = 1
Query: 1 RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQALVLDTCMGVVTAAILERMACRGRVIALYAQSQPSMDAVRKFDHPEADLVRCLLPLHTSELGKLSVPEEEREPDPLEDGGVGDTRTEEEALEEYNTFMDEHGVSEKDRSIKIEKKIARMRRNRMKPPPRQV-RDWLRQGCDCLVIAGKYDPLTAVEAMLPHLSPSRPFTVYSEFVE 675
+Y PRV+ ++ T S+C Y LKN K NLR DSL +L +ANVFAG Q LV+DTCMG+V AI ER A GR++A Y QPS+D +R+F+ + + ++ L+V E + PL G T E EA + D+ + E K AR + N++K P V R+W+R D LV+A YDP + A+LP+L+ S+PF VYSE++E
Sbjct: 160 KYMPRVQFLKCTAESLCRTYRLKNPLKTCNLREDSLGQMLVYANVFAGAQVLVVDTCMGLVIGAIAERQAGHGRILAGYEGQQPSVDILRRFNFDKRTH-ESIKYFSFKDVANLAVLETDVVEPPLAPPRDGLTPAEREAA-----MVARLAGFTADQRKRYEAKKARNQVNKVKREPAAVVREWVRAKSDALVVASSYDPERVLLALLPYLACSKPFVVYSEYLE 379 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59378.13450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59378.13450.1 >prot_H-elongata_contig59378.13450.1 ID=prot_H-elongata_contig59378.13450.1|Name=mRNA_H-elongata_contig59378.13450.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp RYRPRVRVVRVTGRSMCNAYFLKNREKVSNLRSDSLALLLSHANVFAGCQback to top mRNA from alignment at H-elongata_contig59378:451..3589- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59378.13450.1 ID=mRNA_H-elongata_contig59378.13450.1|Name=mRNA_H-elongata_contig59378.13450.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3139bp|location=Sequence derived from alignment at H-elongata_contig59378:451..3589- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59378:451..3589- >mRNA_H-elongata_contig59378.13450.1 ID=mRNA_H-elongata_contig59378.13450.1|Name=mRNA_H-elongata_contig59378.13450.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at H-elongata_contig59378:451..3589- (Himanthalia elongata Himel1 dioecious)back to top |