mRNA_H-elongata_contig59373.13449.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: D7FTI7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI7_ECTSI) HSP 1 Score: 118 bits (295), Expect = 7.430e-33 Identity = 68/111 (61.26%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 1 MAIRSVSVEIFAAGDGINYPGK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
MA R+VSVEIFAAGDGINYP K VVPGLD+GVSQLSIGERAKVTIPAA AYG RGFPGLVPP+SALVFDLELITFN
Sbjct: 1 MARRAVSVEIFAAGDGINYPQKGQTVTVHYTGYLEDGTQFDSSRNRGKPFKFKLGSEQVVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 111
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: A0A7S2C1G0_9STRA (Peptidylprolyl isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1G0_9STRA) HSP 1 Score: 109 bits (272), Expect = 2.360e-29 Identity = 62/111 (55.86%), Postives = 68/111 (61.26%), Query Frame = 1
Query: 1 MAIRSVSVEIFAAGDGINYPGK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
M V+VEIFAAGDGINYP K V+ GLD+GVSQLSIGERAK++IPAALAYGERGFPGLVPP+S LVFDLELITFN
Sbjct: 1 MPRHDVAVEIFAAGDGINYPRKGQTVTVHYTGYLPDGDTFDSSRDRGKPFKFKLGAEQVILGLDQGVSQLSIGERAKISIPAALAYGERGFPGLVPPDSELVFDLELITFN 111
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: F0YHE6_AURAN (Peptidylprolyl isomerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHE6_AURAN) HSP 1 Score: 104 bits (260), Expect = 1.630e-27 Identity = 55/108 (50.93%), Postives = 65/108 (60.19%), Query Frame = 1
Query: 10 RSVSVEIFAAGDGINYPGK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
+ ++VEIFAAGDG+NYP K V+PGLD GVSQLSIGERAK+ IP +AYG+RGFPGL+P NSAL+FDLELITFN
Sbjct: 5 KDIAVEIFAAGDGVNYPRKGQTVTVHYSGYLPSGDMFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKIVIPPDMAYGDRGFPGLIPRNSALIFDLELITFN 112
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: A0A8J2T2V8_9STRA (Peptidylprolyl isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2V8_9STRA) HSP 1 Score: 103 bits (258), Expect = 3.380e-27 Identity = 57/109 (52.29%), Postives = 68/109 (62.39%), Query Frame = 1
Query: 7 IRSVSVEIFAAGDGINYP--------------------------GK----------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
+ ++VEIFAAGDG+NYP GK V+PGLD GVSQLSIGERAK++IP+ +AYGERGFPGL+P NSALVFDLELITF+
Sbjct: 5 LTEIAVEIFAAGDGVNYPRQGQTVTVHYSGYLPNGEIFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKISIPSDMAYGERGFPGLIPRNSALVFDLELITFS 113
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: A0A6U1QP22_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QP22_9STRA) HSP 1 Score: 103 bits (256), Expect = 6.810e-27 Identity = 60/106 (56.60%), Postives = 63/106 (59.43%), Query Frame = 1
Query: 16 VSVEIFAAGDGINYP--------------------------GK----------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
V VEIFAAGDGINYP GK V+ GLDEGVSQLSIGERAK+TIP+ YGERGFPGLVPPNS LVFDLELITF
Sbjct: 8 VKVEIFAAGDGINYPQPGKTVTVHYTGFLPDGTQFDSSRDRGKPFKFKLGAEQVISGLDEGVSQLSIGERAKITIPSQKGYGERGFPGLVPPNSQLVFDLELITFT 113
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: A0A836CL56_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL56_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 7.550e-23 Identity = 41/54 (75.93%), Postives = 50/54 (92.59%), Query Frame = 1
Query: 64 KVVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
+VVPGLDEG +QLSIGERAK+T+P ++AYG +GFPGLVPPNS LVFD+ELITF+
Sbjct: 55 QVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITFS 108
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: A0A485LR83_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LR83_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 3.530e-22 Identity = 49/106 (46.23%), Postives = 59/106 (55.66%), Query Frame = 1
Query: 16 VSVEIFAAGDGINYPGK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
V VE+F AGDG+NYP K V+PGLDEG+ QL + ERAK+ IPA AYG++GFPGLVPPN+ LVFD+ELITF
Sbjct: 21 VQVEVFVAGDGVNYPKKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIEQLCMKERAKIYIPADKAYGKKGFPGLVPPNTNLVFDIELITFK 126
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: K3WSB6_GLOUD (Peptidylprolyl isomerase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB6_GLOUD) HSP 1 Score: 90.5 bits (223), Expect = 8.800e-22 Identity = 49/106 (46.23%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 16 VSVEIFAAGDGINYPGK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
+ VE+F AGDGINYP K V+PGLDEGV +L + ERAK+ IPA AYG +GFPGLVPPNS L+FDLEL+TF
Sbjct: 16 IQVEVFIAGDGINYPKKGQTVVVHYTGYLQDGRKFDSSRDREKPFKFKLGAEQVIPGLDEGVERLCMKERAKIFIPADKAYGRKGFPGLVPPNSNLIFDLELLTFR 121
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: A0A2R5GKI3_9STRA (Peptidylprolyl isomerase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKI3_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.150e-21 Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 1
Query: 61 GKVVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
G+V+ GLDEGVSQLS+GERAK+ IPA LAYGERGFPGL+P +S L+FD+ELITF
Sbjct: 77 GQVITGLDEGVSQLSVGERAKLVIPADLAYGERGFPGLIPSSSTLIFDVELITFT 131
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: A0A024TRW9_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TRW9_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 4.070e-21 Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 1
Query: 16 VSVEIFAAGDGINYPGK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
+ VE+F AGDGINYP K V+PGLDEG+ +L + ERAK+ IP+ AYG++GFPGLVPPN+ LVFD+ELITF
Sbjct: 21 IQVEVFVAGDGINYPQKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIERLCMKERAKIYIPSDKAYGKKGFPGLVPPNTNLVFDIELITFK 126 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59373.13449.1 >prot_H-elongata_contig59373.13449.1 ID=prot_H-elongata_contig59373.13449.1|Name=mRNA_H-elongata_contig59373.13449.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp MAIRSVSVEIFAAGDGINYPGKVVPGLDEGVSQLSIGERAKVTIPAALAYback to top mRNA from alignment at H-elongata_contig59373:882..2359+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59373.13449.1 ID=mRNA_H-elongata_contig59373.13449.1|Name=mRNA_H-elongata_contig59373.13449.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1478bp|location=Sequence derived from alignment at H-elongata_contig59373:882..2359+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59373:882..2359+ >mRNA_H-elongata_contig59373.13449.1 ID=mRNA_H-elongata_contig59373.13449.1|Name=mRNA_H-elongata_contig59373.13449.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig59373:882..2359+ (Himanthalia elongata Himel1 dioecious)back to top |