mRNA_H-elongata_contig59373.13449.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59373.13449.1
Unique NamemRNA_H-elongata_contig59373.13449.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: D7FTI7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI7_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 7.430e-33
Identity = 68/111 (61.26%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 MAIRSVSVEIFAAGDGINYPGK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
            MA R+VSVEIFAAGDGINYP K                                    VVPGLD+GVSQLSIGERAKVTIPAA AYG RGFPGLVPP+SALVFDLELITFN
Sbjct:    1 MARRAVSVEIFAAGDGINYPQKGQTVTVHYTGYLEDGTQFDSSRNRGKPFKFKLGSEQVVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 111          
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: A0A7S2C1G0_9STRA (Peptidylprolyl isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1G0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.360e-29
Identity = 62/111 (55.86%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 MAIRSVSVEIFAAGDGINYPGK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
            M    V+VEIFAAGDGINYP K                                    V+ GLD+GVSQLSIGERAK++IPAALAYGERGFPGLVPP+S LVFDLELITFN
Sbjct:    1 MPRHDVAVEIFAAGDGINYPRKGQTVTVHYTGYLPDGDTFDSSRDRGKPFKFKLGAEQVILGLDQGVSQLSIGERAKISIPAALAYGERGFPGLVPPDSELVFDLELITFN 111          
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: F0YHE6_AURAN (Peptidylprolyl isomerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHE6_AURAN)

HSP 1 Score: 104 bits (260), Expect = 1.630e-27
Identity = 55/108 (50.93%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   10 RSVSVEIFAAGDGINYPGK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
            + ++VEIFAAGDG+NYP K                                    V+PGLD GVSQLSIGERAK+ IP  +AYG+RGFPGL+P NSAL+FDLELITFN
Sbjct:    5 KDIAVEIFAAGDGVNYPRKGQTVTVHYSGYLPSGDMFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKIVIPPDMAYGDRGFPGLIPRNSALIFDLELITFN 112          
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: A0A8J2T2V8_9STRA (Peptidylprolyl isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2V8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.380e-27
Identity = 57/109 (52.29%), Postives = 68/109 (62.39%), Query Frame = 1
Query:    7 IRSVSVEIFAAGDGINYP--------------------------GK----------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
            +  ++VEIFAAGDG+NYP                          GK          V+PGLD GVSQLSIGERAK++IP+ +AYGERGFPGL+P NSALVFDLELITF+
Sbjct:    5 LTEIAVEIFAAGDGVNYPRQGQTVTVHYSGYLPNGEIFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKISIPSDMAYGERGFPGLIPRNSALVFDLELITFS 113          
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: A0A6U1QP22_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QP22_9STRA)

HSP 1 Score: 103 bits (256), Expect = 6.810e-27
Identity = 60/106 (56.60%), Postives = 63/106 (59.43%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYP--------------------------GK----------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
            V VEIFAAGDGINYP                          GK          V+ GLDEGVSQLSIGERAK+TIP+   YGERGFPGLVPPNS LVFDLELITF 
Sbjct:    8 VKVEIFAAGDGINYPQPGKTVTVHYTGFLPDGTQFDSSRDRGKPFKFKLGAEQVISGLDEGVSQLSIGERAKITIPSQKGYGERGFPGLVPPNSQLVFDLELITFT 113          
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: A0A836CL56_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL56_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 7.550e-23
Identity = 41/54 (75.93%), Postives = 50/54 (92.59%), Query Frame = 1
Query:   64 KVVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
            +VVPGLDEG +QLSIGERAK+T+P ++AYG +GFPGLVPPNS LVFD+ELITF+
Sbjct:   55 QVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITFS 108          
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: A0A485LR83_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LR83_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.530e-22
Identity = 49/106 (46.23%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYPGK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
            V VE+F AGDG+NYP K                                    V+PGLDEG+ QL + ERAK+ IPA  AYG++GFPGLVPPN+ LVFD+ELITF 
Sbjct:   21 VQVEVFVAGDGVNYPKKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIEQLCMKERAKIYIPADKAYGKKGFPGLVPPNTNLVFDIELITFK 126          
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: K3WSB6_GLOUD (Peptidylprolyl isomerase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB6_GLOUD)

HSP 1 Score: 90.5 bits (223), Expect = 8.800e-22
Identity = 49/106 (46.23%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYPGK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
            + VE+F AGDGINYP K                                    V+PGLDEGV +L + ERAK+ IPA  AYG +GFPGLVPPNS L+FDLEL+TF 
Sbjct:   16 IQVEVFIAGDGINYPKKGQTVVVHYTGYLQDGRKFDSSRDREKPFKFKLGAEQVIPGLDEGVERLCMKERAKIFIPADKAYGRKGFPGLVPPNSNLIFDLELLTFR 121          
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: A0A2R5GKI3_9STRA (Peptidylprolyl isomerase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKI3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.150e-21
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 1
Query:   61 GKVVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
            G+V+ GLDEGVSQLS+GERAK+ IPA LAYGERGFPGL+P +S L+FD+ELITF 
Sbjct:   77 GQVITGLDEGVSQLSVGERAKLVIPADLAYGERGFPGLIPSSSTLIFDVELITFT 131          
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Match: A0A024TRW9_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TRW9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.070e-21
Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYPGK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAALAYGERGFPGLVPPNSALVFDLELITFN 225
            + VE+F AGDGINYP K                                    V+PGLDEG+ +L + ERAK+ IP+  AYG++GFPGLVPPN+ LVFD+ELITF 
Sbjct:   21 IQVEVFVAGDGINYPQKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIERLCMKERAKIYIPSDKAYGKKGFPGLVPPNTNLVFDIELITFK 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59373.13449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTI7_ECTSI7.430e-3361.26Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A7S2C1G0_9STRA2.360e-2955.86Peptidylprolyl isomerase n=1 Tax=Florenciella parv... [more]
F0YHE6_AURAN1.630e-2750.93Peptidylprolyl isomerase n=1 Tax=Aureococcus anoph... [more]
A0A8J2T2V8_9STRA3.380e-2752.29Peptidylprolyl isomerase n=1 Tax=Pelagomonas calce... [more]
A0A6U1QP22_9STRA6.810e-2756.60Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]
A0A836CL56_9STRA7.550e-2375.93Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A485LR83_9STRA3.530e-2246.23Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID... [more]
K3WSB6_GLOUD8.800e-2246.23Peptidylprolyl isomerase n=1 Tax=Globisporangium u... [more]
A0A2R5GKI3_9STRA1.150e-2174.55Peptidylprolyl isomerase n=1 Tax=Hondaea fermental... [more]
A0A024TRW9_9STRA4.070e-2144.34Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59373contigH-elongata_contig59373:882..2359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue7.3e-25
Seed eggNOG ortholog2880.D7FTI7
KEGG koko:K09568,ko:K15382
KEGG TC9.A.58.1
EggNOG free text desc.Peptidyl-prolyl cis-trans isomerase
EggNOG OGsCOG0545@1,KOG0544@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-21_001540.1
Exons3
Model size228
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59373.13449.1prot_H-elongata_contig59373.13449.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59373 882..2359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930962.6721108-CDS-H-elongata_contig59373:881..9471622930962.6721108-CDS-H-elongata_contig59373:881..947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59373 882..947 +
1691679642.0663488-CDS-H-elongata_contig59373:881..9471691679642.0663488-CDS-H-elongata_contig59373:881..947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59373 882..947 +
1622930962.692123-CDS-H-elongata_contig59373:1843..19001622930962.692123-CDS-H-elongata_contig59373:1843..1900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59373 1844..1900 +
1691679642.0814285-CDS-H-elongata_contig59373:1843..19001691679642.0814285-CDS-H-elongata_contig59373:1843..1900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59373 1844..1900 +
1622930962.7068563-CDS-H-elongata_contig59373:2254..23591622930962.7068563-CDS-H-elongata_contig59373:2254..2359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59373 2255..2359 +
1691679642.0945854-CDS-H-elongata_contig59373:2254..23591691679642.0945854-CDS-H-elongata_contig59373:2254..2359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59373 2255..2359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59373.13449.1

>prot_H-elongata_contig59373.13449.1 ID=prot_H-elongata_contig59373.13449.1|Name=mRNA_H-elongata_contig59373.13449.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MAIRSVSVEIFAAGDGINYPGKVVPGLDEGVSQLSIGERAKVTIPAALAY
GERGFPGLVPPNSALVFDLELITFN*
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mRNA from alignment at H-elongata_contig59373:882..2359+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59373.13449.1 ID=mRNA_H-elongata_contig59373.13449.1|Name=mRNA_H-elongata_contig59373.13449.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1478bp|location=Sequence derived from alignment at H-elongata_contig59373:882..2359+ (Himanthalia elongata Himel1 dioecious)
ATGGCAATACGGTCGGTTTCGGTTGAAATATTTGCGGCGGGAGACGGCAT CAACTATCCCGGCAAGGTTTGTTCGCGCGCGAGTATGCTCTTCTTCATGA TACTGTACTATCGCACACACATTCTCTCTGATAATTTGATCGGCGTGCGA TCAAAGCCCTAGTCTGGAGCTGCCTAGTCTAGGGTTCCGCGACGAAGAAG GCACAATCCAGAGAGCGCTAAACTATTGGCGTTGCAACTGGAGCTGTAGG CTACCCTAATTAAGTCGGTGTCCTCAGACCTCGTCCGGCCTCCTGCTGGC GATATAGGGACACACGGTCACGGTTCATTACACGGGATACCTCGAGGATG GAACAATGTTCGATTCATCCAGAAATCGAGGTCGGCCTTTTAAGTTCAAG CTGGGAAGCGAGCAGGCGAGAATAAATCCACGACCTACAGCACCTTGGAC GTCTTGGATGCGTGGATTTTTATCCTTGCTCTGGCATACCCTAGTACTGT TGAAGAGACACCGCCGAGTTCAGTATGTGTATGTGTAGAGTCTAATCGTT GGAAGTTACATTCAAAAAGCTCGCCACGTAATCGCTGGAAGTGACGGGTG TAAAATTAAGAAGCAGCTCACCGCTTTGCTCGAACTACCTAGGAGACATA CTTGGGATTACAGTAATGGCATAAACGTTTGGCTTCTCCGAAGCAGAAAG ATCTCAAGCCTCGTTCACCTGATGCAGCATACAATAGAGCTACACATGTG TGGAAAAACCCCCCAATGAAACAAGTCTTCGAGTTCGCATATACGGGCGA GCGAGCCCCCGTCCCTTTCCTGCAGTCCAGAGCTCAATGCCCCCGTTCAA ATTTAGAGAACTCTTAAGCTCTAGGTGCGGTATCCTCGAGAGATGCTTTT GGTTTCATGTGCCCCGGTGGATACACAGCCCGCGTCACGCTCCTCGCCTC TTTCACCTTCAGGTCGTGCCGGGGCTAGACGAGGGTGTCAGTCAGCTGAG CATCGGAGAGCGAGCGAAGGTGAGGAGGGGAGTTCGTTGCTCTCTGCCGA GCACGATTTTACGTGCGGCGGCTGCTGCTGCTGCGAATCGAAGGTTTCGC CGGTCGATGTGATGATAGAAAAGCTCTCCTCTTTTTGAGGGGATAGATGT ATATATACATAATAGATAGTTTTACGTCTAGAGGCAGTGCGAGCAAGACA TCACCCACGCCATAAAGGGGTCACCGCGGAAATCGGCGCTCAACACGCTA CGGTGGTGCAGCACCCGTAGTGCCCTCGTTGGTACTCTTAACGCCTCCGT ATTTCGTCTGTAGCGGTAAAGCTATGCCCTCTCTTCTCGATTTCGATGCT TGGTGTGCCCTATTTTGTCCTAGGTGACCATTCCGGCGGCTTTGGCGTAC GGGGAGAGAGGATTCCCGGGTCTAGTTCCGCCTAACTCCGCGCTAGTGTT CGACCTCGAGCTCATAACCTTCAACTAG
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Coding sequence (CDS) from alignment at H-elongata_contig59373:882..2359+

>mRNA_H-elongata_contig59373.13449.1 ID=mRNA_H-elongata_contig59373.13449.1|Name=mRNA_H-elongata_contig59373.13449.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig59373:882..2359+ (Himanthalia elongata Himel1 dioecious)
ATGGCAATACGGTCGGTTTCGGTTGAAATATTTGCGGCGGGAGACGGCAT
CAACTATCCCGGCAAGATGGCAATACGGTCGGTTTCGGTTGAAATATTTG
CGGCGGGAGACGGCATCAACTATCCCGGCAAGGTCGTGCCGGGGCTAGAC
GAGGGTGTCAGTCAGCTGAGCATCGGAGAGCGAGCGAAGGTCGTGCCGGG
GCTAGACGAGGGTGTCAGTCAGCTGAGCATCGGAGAGCGAGCGAAGGTGA
CCATTCCGGCGGCTTTGGCGTACGGGGAGAGAGGATTCCCGGGTCTAGTT
CCGCCTAACTCCGCGCTAGTGTTCGACCTCGAGCTCATAACCTTCAACTA
GGTGACCATTCCGGCGGCTTTGGCGTACGGGGAGAGAGGATTCCCGGGTC
TAGTTCCGCCTAACTCCGCGCTAGTGTTCGACCTCGAGCTCATAACCTTC
AACTAG
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