mRNA_H-elongata_contig5937.13448.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig5937.13448.1 vs. uniprot
Match: D7FNY6_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI) HSP 1 Score: 179 bits (455), Expect = 5.440e-42 Identity = 151/428 (35.28%), Postives = 202/428 (47.20%), Query Frame = 3
Query: 3 HVVVVSVKGQLLDKVARDFSNKFYPALI--GADETVQRSFDLASESVETAASSAGAK------FLLLPNGANHEVKIFDSLPVGNFVDLSPSLPPVVNKFVARPEYFGTVDLQRAVEMMGNPNARLISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRC-RGLVDEGSRDL------------RPTPGAGHLKHIEYLCRLIGSAIGMPAREPTSPVALHDFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRGCEARDSLVDLFDKLFRRSS--HIWILQTVEQHPLDRATKCVHNTGHKVRICLPLLLVRVCKTCEVKPLGNEDAARLLIHLYPRDGRGFKFEELGVPRGS-SMADCPSMMVNHPVL----ELVGGHPGTLVSLSSHLREFSLIDDFR------SHREAFRDRSSLRFCEQRAG 1184
HVV V + D AR+F+N FY AL G TV+++FD+A V A+ GA FLLLP NH+V+IFD+LP G VD + LPP A Y G +Q V ++ + A +++ G+PG GKT A + C+YVR R F+ C + +D +L P +G E LCR IG AIG+P P++ LH F+ + T + KVLL LD+ DSL RG +A+D LV L L H+ +L T E + L + H +V EV+PL A+ LLI PRD + EELG+ G S A S NHPVL E+ GGHPGTLV L+ L L D + S R FRD+S R +R+G
Sbjct: 157 HVVAVKHNAGVTDGAAREFANVFYNALFENGGRSTVKQAFDMALNCVN--ATHLGAPKHEEDLFLLLPRDGNHDVRIFDTLPEGKLVDETHRLPPRPPCKKAVSSYMGPARVQHVVRLLLDERAACVTVTGDPGSGKTELAIQACDYVRYRHHFNSFLWADCDKAALDASPYNLVSSADRFYVLPNSPNGASGDSVSSEDLCRQIGVAIGIPQPGPSTTNELHQFIFPN--TDSGQPSQKVLLVLDNVDSLL-ERGGDAQDRLVHLLGDLCSMGGGGHLKLLATSE-YKLLSGNEVFHGGTERV--------------AEVEPLETRHASELLIDNSPRD---LQPEELGLQSGGLSKAHVVSAAQNHPVLKEVLEIAGGHPGTLVRLAPVLLNGPLDDACKLKEMATSCRADFRDKSYRRRGHRRSG 561
BLAST of mRNA_H-elongata_contig5937.13448.1 vs. uniprot
Match: A0A6H5KH01_9PHAE (CHAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH01_9PHAE) HSP 1 Score: 172 bits (436), Expect = 2.560e-40 Identity = 129/378 (34.13%), Postives = 187/378 (49.47%), Query Frame = 3
Query: 3 HVVVVSVKGQLLDKVARDFSNKFYPALIG--ADETVQRSFDLASESVETA---ASSAGAKFLLLPNGANHEVKIFDSLPVGNFVDLSPSLPPVVNKFVARPEYFGTVDLQRAVEMMGNPNARLISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRCRGLVDEGSRDLRPTPGAGHLKHIEYLCRLIGSAIGMPAREPTSPVALHDFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRGCEARDSLVDLFDKLFRRSSHIWILQTVEQHPLDRATKCVHNTGHKVRICLPLLLVRVCKTCEVKPLGNEDAARLLIHLYPRDGRGFKFEEL--GVPRGSSMADCPSMMVNHPVLELVGGHPGTLVSLSSHLREFSLID 1115
HVV V + + D+ A+ F+ +FY AL+ TVQ++FD+A +V A G FLLLP+G NH+V+IFD+LP G+FVD + P P Y G +LQ+ VEM+ +P +++ GE G GK+ RA + C+YVR R FD ++ + + T + + CRLIG AIGM P+S L FL + KVLL LDD DSLF + G +ARD ++ L L S H+ +L T EQ L R T G + + +V+PL + DAA+LL+ P F +EL + + D + H VL+ GHPGTL+ L+ L + ++ D
Sbjct: 160 HVVAVKREESVTDQAAQQFAKQFYDALLSEAGSFTVQQAFDIALNTVNAHPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGSFVDETREPPARPRCARPVPFYQGLEELQKVVEMLVDPVTACVTVTGEHGSGKSERAIQACDYVRMRHHFDALWWADMKHAM--------ATAINSSVWFYDDPCRLIGIAIGMTQPGPSSEEELVRFLFDRPTVQEGRTCHKVLLVLDDVDSLFEAGG-DARDRVLKLLSNLCSMSEHLKLLVTSEQS-LQRDTNERFRHGSE-------------RVAKVRPLNDRDAAQLLLDKVPTK---FTKKELRLSLSHRCTREDILKALEAHRVLKAAEGHPGTLLRLAPLLEDHNVND 511
BLAST of mRNA_H-elongata_contig5937.13448.1 vs. uniprot
Match: A0A6H5KC67_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC67_9PHAE) HSP 1 Score: 157 bits (397), Expect = 4.420e-35 Identity = 143/428 (33.41%), Postives = 192/428 (44.86%), Query Frame = 3
Query: 3 HVVVVSVKGQLLDKVARDFSNKFYPALIGADETVQRSFDLASESVETAASSAGAK---FLLLPNGANHEVKIF-----DSLPVGNF--------------------VDLSPSLPPVVNKFVARPEYFGTVDLQRAVEMMGNPNARLISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRC-RGLVDEGSRDL-----RPTPGAGHLKHIEYLCRLIGSAIGMPAREPTSPVALHDFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRGCEARDSLVDLFDKLFRRSS--HIWILQTVEQHPLDRATKCVHNTGHKVRICLPLLLVRVCKTCEVKPLGNEDAARLLIHLYPRDGRGFKFEELGVPRGS-SMADCPSMMVNHPVLE----LVGGHPGTLVSLSSHLREFSLIDDFRSHREAFRDRSSLR 1163
HVV V + D AR+F+ FY ALI + TV+R+FD A + + FLLLP G E K F + L +G F VD + +PP A Y G V +Q V ++ +P +++ GEPG GKT A + C+YVR+R FD C + +D P +G +E LCRLIG AIGMP P++ LH F+ + T + KVLL LD+ DSLF R +A+D LV L L H+ +L T E + L R V VKPL + A+ LL+ PRD + EELG+ G S AD S + NHPVL+ + GGHPGTLV L+ L SL D + A + R+S R
Sbjct: 122 HVVAVKHNSGVTDGAAREFATVFYDALIKHEVTVKRAFDTALICINAHRCPPKHEEDLFLLLPKG---EEKSFGCCTAERLRLGRFQHAPFQEDQPFVVEHVGGKLVDETRQVPPRPPCKKAVSSYMGLVRVQFVVRLLLDPQTVCVTVTGEPGSGKTELAIQACDYVRERHHFDSFLWADCDKAALDACPETFFVIPNSPNGASGDSVSLEDLCRLIGVAIGMPQPGPSTANELHQFIFKNPNTDSGQPFQKVLLVLDNVDSLF-ERDEDAQDRLVHLLSDLCSMGGGGHLKLLATSE-YKLLRGNGYFRGGSEMV--------------ATVKPLKMQHASELLMDNSPRD---LQPEELGLQSGGFSKADVVSAVENHPVLKEVLKIAGGHPGTLVRLAPVLLHGSLNDARKLKEVATKCRASFR 527
BLAST of mRNA_H-elongata_contig5937.13448.1 vs. uniprot
Match: W7U5S9_9STRA (Sh2 domain containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5S9_9STRA) HSP 1 Score: 155 bits (393), Expect = 8.840e-35 Identity = 180/740 (24.32%), Postives = 294/740 (39.73%), Query Frame = 3
Query: 3 HVVVVSVKGQLLDKVARDFSNKFYPALIGADETVQRSFDLASESV--ETAASSAGAKFLLLPNGANHEVKIFDSLPVGNFVDLSPSLPPVVNKFVARPEYF--GTVDLQRAVEMMG--NPNARLISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRCRGLVDEGSRDLRPTPGAGHLKHIEYLCRLIGSAIGMPAREPTSPVALHDFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRGCEARDSLVDLFDKLFRRSSHIWILQTVEQHPLDRATKCVHNTGHKVRICLPLLLVRVCKTCEVKPLGNEDAARLLIHLYPRDGRGFKFEELGVPRGSSMADCPSMMVNHPVLELVGGHPGTLVSLSSHLREFSLIDDFRSHREAFRDRSSL------RFCEQRAG------------------------------------EIAV-------KHGIRSEQCKGVWVKAAKQSAEGAQGLCSYGPRWYESVQLDFLLRQLEQHLYEV----------------QTGNNINNEPSPGIIYSRLS--------VYGVTSGQERMSSTMRPRCMGPEDLNFVQS--ILRSTEKQQWEGRSSNFHHNIISIEAFRTFWEWWEETTKLISRVMYEWASTTPVKIHGFVSREEAERKLLGKKLGTFLIRFSVTNPGQISISYENRG-----------------NVEHCLVNVIQGGA----WEYNTQVYPKLQDLVKACSSLQNVY 1916
HVV + ++ D+ A F+ FY + I TV+++F++AS + ET SS +FLLLP H++ +FD +G FVD SP PPV N P F V Q + ++ + R I++ G PG+GKTA A KVC+Y+ +R +FD I++V LR + K E LC++IG+AIG E S FL+ SG +V++ LD D F++R +SLV + L R + +L T E L + + ++ KV + PL + A +L ++ P GF EE+ ++ + + + PV+ + GHP +V + L + L D + ++ + D S + E+ +G +A+ + +R + +W++ +Q G WY D L +L + L + T N E S +S G T T+R + P D+ F++ ++R+ E +++ I F F E W I+ + EW P +HGF+SR+E E L G K GTFL RFS ++ G +S+S+ + ++ H LV V + E + L+DL+ + +SL Y
Sbjct: 198 HVVAMKWDAKVSDRAACIFAEFFYLS-IAMGRTVRQAFEVASTAAVTETGVSSEDEQFLLLPADGEHDLAVFDDAEMGEFVDESP--PPVPNTCDPPPVPFVGRNVAAQEVIGLLSMVSQGNRCITVRGRPGVGKTALASKVCQYLAERNQFDAIYMV-----------PLRRKEYRSYEK--ETLCKVIGAAIGF---EDASNEREIVFLLQDKHPSG-----RVIMVLDGPDR-FFNRS----NSLVQVLSYLLSRIHGLHLLVTAEGSVLGSGSGRLESSSEKV--------------VHLGPLSDVATAHMLANIAPP---GFDLEEMMSRPYATREEAYAELAASPVIRELRGHPKAIVMFAPLLEDHRLEDLYDKAKQCYVDASQVVEVDTPSMGEEESGIGXXXXXXXXXXXXXXXXXSRISSAENGRDEKRELDALALARETEEARQFLREPTSQRLWLEVVRQGGARQSSSMHQGVPWYRLT--DALQEELRKALIDALRLSRFHIEDFCATHCSTNGNGGAEGSKAFSPPAVSETKQDSKVADGATISIADKDGTIRG--LEPGDIQFIKDRLVIRTPES------------DLVRITDFAVFCEGWVPAQNSIALLCREWLCNKPRLLHGFLSRKETEALLQGYKEGTFLFRFSTSHLGLLSLSFVGKSRKNYPNDEEGEKKAKALHIRHFLVQVEEDRRCVVFMEPGRSRHASLEDLIMSSASLLEFY 875
BLAST of mRNA_H-elongata_contig5937.13448.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI) HSP 1 Score: 152 bits (385), Expect = 1.090e-33 Identity = 118/324 (36.42%), Postives = 155/324 (47.84%), Query Frame = 3
Query: 186 GANHEVKIFDSLPVGNFVDLS--PSLPPVVNKFVARPEYFGTVDLQRAVEMMGNPNARLISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRC-----RGLVDEGSRDLRPTPGAGHLKHIEYLCRLIGSAIGMPAREPTSPVALHDFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRGCEARDSLVDLFDKL--FRRSSHIWILQTVEQHPLDRATKCVHNTGHKVRICLPLLLVRVCKTCEVKPLGNEDAARLLIHLYPRDGRGFKFEELGVPRGS-SMADCPSMMVNHPVL----ELVGGHPGTLVSLSSHLREFSLID 1115
G NH+V+IF++LP G VD + P+ P K V P Y G LQ+ V ++ + A ++I GEPG GKT RA + C+YVR+R RFD C D+ P E CRLIG AIGMP PTS LH F+ N+ T + KVLL LD+ DSL G +A+D LV L L H+ +L T E L + T R V+PL A+ LL+ PR+ + ELG+ G S+AD + + NHPVL E+ GHPGTLV L+ L + SL D
Sbjct: 111 GGNHDVRIFETLPEGQLVDETHPPTPRPPCKKAV--PSYKGLAGLQQVVRLLLDERAACVTITGEPGSGKTERAIQACDYVRERHRFDCFLWADCDKAALNSCSDKSGNPFFALPTCLKDSAWEDPCRLIGLAIGMPQPGPTSEQELHQFIFNNPNTDSGQPFQKVLLVLDNVDSLLERDG-DAQDRLVQLLCNLCSIGDGGHLKLLATSEHKLLSGHERFRGGTETVAR---------------VEPLETRHASELLMDNLPRN---LELTELGLESGGLSLADVLTAVQNHPVLKEVLEIAEGHPGTLVRLAPVLLDGSLDD 413
BLAST of mRNA_H-elongata_contig5937.13448.1 vs. uniprot
Match: K8YZD6_NANGC (Sh2 domain containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YZD6_NANGC) HSP 1 Score: 122 bits (307), Expect = 5.530e-26 Identity = 111/377 (29.44%), Postives = 175/377 (46.42%), Query Frame = 3
Query: 3 HVVVVSVKGQLLDKVARDFSNKFYPALIGADETVQRSFDLASESV--ETAASSAGAKFLLLPNGANHEVKIFDSLPVGNFVDLSPSLPPVVNKFVARPEYF--GTVDLQRAVEMMG--NPNARLISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRCRGLVDEGSRDLRPTPGAGHLKHIEYLCRLIGSAIGMPAREPTSPVALHDFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRGCEARDSLVDLFDKLFRRSSHIWILQTVEQHPLDRATKCVHNTGHKVRICLPLLLVRVCKTCEVKPLGNEDAARLLIHLYPRDGRGFKFEELGVPRGSSMADCPSMMVNHPVLELVGGHPGTLVSLSSHLREFSLID 1115
HVV + ++ D+ A F+ FY + I TV+++F++AS + ET SS +FLLLP H++ +FD +G FVD SP PPV N P F V Q + ++ + R I++ G PG+GKTA A KVC+Y+ +R +FD I++V LR + K E LC++IG+AIG E S FL+ SG +V++ LD D F++R +SLV + L R + +L T E L + + ++ KV + PL + A +L ++ P GF EE+ ++ + + + PV+ + GHP +V + L + L D
Sbjct: 56 HVVAMKWDAKVSDRAACIFAEFFYLS-IAMGRTVRQAFEVASTAAVTETGVSSEDEQFLLLPADGEHDLAVFDDAEMGEFVDESP--PPVPNTCDPPPVPFVGRNVAAQEVIGLLSMVSQGNRCITVRGRPGVGKTALASKVCQYLAERNQFDAIYMV-----------PLRRKEYRSYEK--ETLCKVIGAAIGF---EDASNEREIVFLLQDKHPSG-----RVIMVLDGPDR-FFNRS----NSLVQVLSYLLSRIHGLHLLVTAEGSVLGSGSGRLESSSEKV--------------VHLGPLSDVATAHMLANIAPP---GFDLEEMMSRPYATREEAYAELAASPVIRELRGHPKAIVMFAPLLEDHRLED 386
BLAST of mRNA_H-elongata_contig5937.13448.1 vs. uniprot
Match: D7FNX8_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI) HSP 1 Score: 113 bits (283), Expect = 1.490e-21 Identity = 114/383 (29.77%), Postives = 158/383 (41.25%), Query Frame = 3
Query: 3 HVVVVSVKGQLLDKVARDFSNKFYPALIGADE--TVQRSFDLASESVETAASSA---GAKFLLLPNGANHEVKIFDSLPVGNFVDLSPSLPPVVNKFVARPEYFGTVDLQRAVEMMGNPNARLISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRCRGLVDEGSRDLRPTPGAGHLKHIEYLCRLIGSAIGMPAREPTSPVALHDFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRGCEARDSLVDLFDKLFRRSSHIWILQTVEQHPLDRATKCVHNTGHKVRICLPLLLVRVCKTCEVKPLGNEDAARLLIHLYPRDGRGFKFE-ELGVPRGSSMADCPSMMVNHPVLELVGGHPGTLVSLSSHLREFSLIDDFRSHR 1133
HVV V + + D+ A+ F+ +FY AL+ TV+++FD+A +V A G FLLLP+G NH+V+IFD+LP G FVD + P ARP RC RP P L+ ++ IG AIGM P S L FL + KVLL L+D DSLF + G +ARD ++ L L + H+ +L T EQ L R T G + + +VKPL + DAA+LLI+ P R K E L + + D + HPVL+ GHPGTL+ L+ L + ++ D HR
Sbjct: 103 HVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAHPPHARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDETREPP-------ARP--------------------------------------------------------RC----------ARPVPFYQGLEELQ-----IGLAIGMTQPGPNSEEELVRFLFDRPTVQEGRTCQKVLLVLEDVDSLFEAGG-DARDRVLKLLSNLCSKGEHLKLLVTSEQR-LQRDTNERFRHGSE-------------RVAKVKPLKDRDAAQLLINKVPT--RFTKKELRLSLSHRCTREDILKALEAHPVLKAAEGHPGTLLRLAPLLEDHNVNDACVLHR 390
BLAST of mRNA_H-elongata_contig5937.13448.1 vs. uniprot
Match: A0A6H5KJ41_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ41_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.560e-19 Identity = 70/219 (31.96%), Postives = 104/219 (47.49%), Query Frame = 3
Query: 1455 STMRPRCMGPEDLNFVQSILRSTE----------KQQWEGRS-----------------------SNFHHNIISIEAFRTFWEWWEETTKLISRVMYEWASTTPVKIHGFVSREEAERKLLGKKLGTFLIRFSVTNPGQISISYENRGN------------------------VEHCLVNVIQGGAW-----EYNTQV-YPKLQDLVKACSSLQNVYSD 1922
+T + R M E+L FV+ +L++ + +QQ R N + N+IS+EAF F WW +S + +WAST P ++HGF+SR AER+LL ++ GTFL+RFS + PG++ +S+ V+HCLV V +GG W E ++V YP L DLV ACSS++ +Y D
Sbjct: 47 NTPQVRWMNEEELAFVRGVLKTKQEKVRLKQEKLRQQLASRGYSGTELVSIGSSGAADAAFGRDGGNGNGNVISLEAFVEFSLWWAPLMTTLSLLRNDWASTNPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPRDSSMLASAPCSRPRSQSMCVKHCLVEVRRGG-WCYIEVEQGSKVPYPSLHDLVLACSSMEVLYPD 264
BLAST of mRNA_H-elongata_contig5937.13448.1 vs. uniprot
Match: A0A485LBF9_9STRA (Aste57867_18877 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBF9_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 3.000e-17 Identity = 165/687 (24.02%), Postives = 260/687 (37.85%), Query Frame = 3
Query: 3 HVVVVSVKGQLLDKVARDFSNKFYPALIGADETVQRSFDLASESVE--TAASSAGAKFLLLPNGANHEVKIFDSLPVGNFVDLSPSLPPVVNKFVARPEYFGTVDLQ-RAVEMMGNPNARLISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRCRGLVDEGSRDLRPTPGAGHLKHIEYLCRLIGSAIGMPAREPTSPVA--LHDFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRGCEAR-DSLVDLFDKLFRRSSHIWILQTVEQ-----HPLDRATKCVHNTGHKVRICLPLLLVRVCKTCEVKPLGNEDAARLLIHLYPRDGRGFKFEELGVPRGS-SMADCPSMMVNHP-----VLELVGGH--------------PGTLVSLSSHLREFSLIDDFR------SHREAFRDRSSLRFCEQRAGEIAVKH-------------GIRSEQ--------CKGVWVKAAKQSAEGAQGLCSYGPRWYESVQLDFLLRQLEQHL---------------YEVQTGNNINNEPSPG-------IIYSRLSVYGVTSGQE---------RMSSTMRP---RCMGPEDLNFVQSILRSTEKQQWEGRSSNFHHNIISIEAFRTFWEWWEETTKLISRVMYEWASTTPVKIHGFVSREEAERKLLGKKLGTFLIRFSVTNPGQISISY 1787
HVVVV + ++LD+ A +FS FY AL+ A +V +SF++ + T A + F LL NG + +F +P G + DL+P LP +N+ A E F ++ AV AR+ SI G+ G+GKT A + C+Y DR F+ IF +R +R P A L YL + G+ A + + + D L + + + LL LD + LF A+ + +L RR + +L T H LD C G +V +P ++ L DAA L PR + E+G S S + HP V +L+ H P + L ++ DD+ + R SL ++ + + G+R + + + K SA GA G+ + E +QL + R++E L Y+ T +N + G ++ S S+ GQ+ R ++ RP RCM +F+ S R G S N H ++ + F FW W+ I+ W P +HGF+S+E + L GTF++RFS T + + Y
Sbjct: 146 HVVVVPKEDKVLDQKAMEFSKAFYTALL-AGHSVLKSFEIGQVQADIVTVADRHNSHFKLLGNGDHATSHLFSDIPPGRYDDLTPPLP--INECDAVAEVFVGRSIEVHAVYTALAEGARMASITGDAGMGKTEIALQSCQYATDRHLFEHIFFLR-----------VRARPPAASLA--SYLLAQLAKTFGVDASDDVDSLCERIRDKLDGLKIA---DKRLSFLLVLDGCNLLFTPHTMRAQLPQFQAILSQLLRRVRSLSLLLTSTTRLGGGHGLD----C--GVGERV---IP-----------IERLPPWDAALLFTVRAPRR---LQVHEMGGGLESFSRGKIMDALGGHPKIICAVAQLLESHDLERDQHEFLHYLIPSVIAGLDPTSKQHFAGDDYCPLLPLIGPTKMTRPEGSLHHVQKSNSSLDLHVATQPAPPPPPSVVGLRIDLPPPHPPSLVSSMSLAVEKTSAAGAGGMST------EQLQLYAIKRRVESVLPTADGRSIWAHAVVEYDKTTTHNGSRHSGSGFDPQQIHLVASLASIPFEFIGQQISRYFATKVRQAAVDRPLSKRCM-----DFLSSSNRIWGPY---GHSPNAHRGMVDLPMFTAFWTWFAPLLDCITTSQL-WGFKHPRLLHGFISKEACQNMLGACVAGTFVLRFSETRASCLVLVY 775
BLAST of mRNA_H-elongata_contig5937.13448.1 vs. uniprot
Match: W4HDL0_9STRA (SH2 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HDL0_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 4.960e-17 Identity = 143/647 (22.10%), Postives = 242/647 (37.40%), Query Frame = 3
Query: 3 HVVVVSVKGQLLDKVARDFSNKFYPALIGADETVQRSFDLASESVETAASSAGAKFLLLPNGANHEVKIFDSLPVGNFVDLSPSLPPVVNKFVARPEYFGTVDLQ-RAVEMMGNPNARLISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRCRGLVDEGSRDLRPTPGAGHLKHIEYLCRLIGSAIGMPAREPTSPVALHDFLVNSSVTSGDEVQPKVLLFLDDADSLFYSRGCEARDSLVD-LFDKLFRRSSHIWILQTVEQHPLDRATKCVHNTGHKVRICLPLLLVRVCKTCEVKPLGNEDAARLLIHLYPRDGRGFKFEELGVPRGSSMADCPSMMVNHPVLELVGGHPGTLVSLSSHLREFSLIDD------------FRSHREAFRDRSSLRFCEQRAGEIAVKHG-----IRSEQCKGVWVKA--------------AKQSAEGAQGLCSYGPRWYESVQLDFLLRQLEQHL---------------YEVQTGNNINNEPSPGIIYSRLSVYGVTSGQERMSSTMRPRCMGPEDLNFVQSILRSTEKQQWEGRSSNFHHNIISIEAFRTFWEWWEETTKLISRVMYEWASTTPVKIHGFVSREEAERKLLGKKLGTFLIRFSVTNPGQISISYENRG 1799
HVVVV + ++LD+ A +FS FY AL+ A +V +SF++ + +KF LL G + +F LP G + DL+P LP VN+ A E F L+ AV AR++S++G+ G+GKT A + C+Y DR F+++F +R L P A +L Y+ + G+ + D+ + LL LD + L + ++ S + + +L RR + +L T L G ++ +P ++PL DAA L PR + E+G G S +++ +GGHP T+ +++ L L D A + S +C ++ K R+ K V V A + S + GL + +QL + RQ+E + + T ++++ + G + S + + P ++ + S G S N ++ ++ F FW W++ I + W P +HGF+S+ L GTFL+RFS T + + + G
Sbjct: 152 HVVVVPKEDKVLDQKAMEFSKAFYTALL-AGHSVLKSFEIGQVQANIVTDTHQSKFKLLGCGNHAASHLFSDLPPGPYEDLTPPLP--VNECDAVAEAFIGRSLEVHAVFTALAEGARMVSLVGDAGMGKTEVALQACQYATDRHLFERVFFLR-----------LSAVPPAPNLTR--YVLTRLAKCFGLLVQGNDLDGLCEHIRDQLDALKADK-RLTFLLVLDGCNYLLTNPNERSQLSTIQAILSQLLRRVRSLSLLVTSTTR-LGGGAGLDCGVGERI---IP-----------IEPLPPWDAALLFTLRAPRR---LQVHEMG---GGLAPFAQSQ-----IMDALGGHPKTICAVAQLLENHDLSRDEGEFLHYLIPAVIAGLDPASKQHFSTDYCPLLPYTVSSKKEPPSDMSRTHDDKLVPVAALPIACPPPPLHQXXSSSSTPASDGLSP------QQLQLFAIKRQVEGSIASSEGCMIWAHAVVEFNKSTASSVDVCQVAALTSVPFEFIGQQVSRYFASKIRQDAVLRPLSTRCMEFLSSSDRIWGRAGVSPNTRRGLVDLDMFGAFWTWFQPLLSCI-KTSQLWGFKHPRLLHGFISKSSCVNMLSPCVPGTFLLRFSETKASCVVVVFVTSG 748 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5937.13448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5937.13448.1 >prot_H-elongata_contig5937.13448.1 ID=prot_H-elongata_contig5937.13448.1|Name=mRNA_H-elongata_contig5937.13448.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=536bp MMGNPNARLISIMGEPGLGKTARAEKVCEYVRDRRRFDKIFVVRCRGLVDback to top mRNA from alignment at H-elongata_contig5937:2..9484- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5937.13448.1 ID=mRNA_H-elongata_contig5937.13448.1|Name=mRNA_H-elongata_contig5937.13448.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=9483bp|location=Sequence derived from alignment at H-elongata_contig5937:2..9484- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5937:2..9484- >mRNA_H-elongata_contig5937.13448.1 ID=mRNA_H-elongata_contig5937.13448.1|Name=mRNA_H-elongata_contig5937.13448.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3216bp|location=Sequence derived from alignment at H-elongata_contig5937:2..9484- (Himanthalia elongata Himel1 dioecious)back to top |