mRNA_H-elongata_contig5936.13447.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5936.13447.1
Unique NamemRNA_H-elongata_contig5936.13447.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig5936.13447.1 vs. uniprot
Match: D7FXU5_ECTSI (DnaJ_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU5_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 1.940e-87
Identity = 134/175 (76.57%), Postives = 152/175 (86.86%), Query Frame = 1 
Query:   13 IRDSIVERYKQAVRTGLLSEVVQEGAVVLGALLLRCPLPISAVAFATYVHLKLPRVPRGTFRVPILPGYRRGTKITFSTPEDVNVTFEVVEKESEFRRYGDDLSVVVRISSKMAKRGGSVRVPTLDQGKVSMKLVRGEVSDGYERRLPGLGMPRRSGGVEDSSSLRGDLIVHFVV 537
            I DSI+ERYKQA RTGLLSEV+QEGA V GALL++CPLPISAVAFA YVHLKLPRVP+G F+VPILPGYRRGTKITFSTPE V+VTFE+VEK+S+FRR GDDL V++R+S KM KRG  V+VPTLD+G +SM+L R E  DGYERRLPGLGMPRR  G ED SS RGDLIVHF+V
Sbjct:  104 IGDSIIERYKQAARTGLLSEVLQEGAAVFGALLIKCPLPISAVAFAAYVHLKLPRVPQGAFKVPILPGYRRGTKITFSTPEGVDVTFELVEKQSQFRRSGDDLFVMLRLSPKMVKRGCVVKVPTLDKGTISMRLKRREARDGYERRLPGLGMPRRKDGGEDGSSNRGDLIVHFMV 278
[Close]
BLAST of mRNA_H-elongata_contig5936.13447.1 vs. uniprot
Match: A0A6H5L854_9PHAE (DnaJ_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L854_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.800e-62
Identity = 107/162 (66.05%), Postives = 124/162 (76.54%), Query Frame = 1 
Query:   13 IRDSIVERYKQAVRTGLLSEVVQEGAVVLGALLLRCPLPISAVAFATYVHLKLPRVPRGTFRVPILPGYRRGTKITFSTPEDVNVTFEVVEKESEFRRYGDDLSVVVRISSKMAKRGGSVRVPTLDQGKVSMKLVRGEVSDGYER----RLPGLGMPRRSGG 486
            I DSI+ERYKQA RTGLLSEV+QEGA V GALL++CPLP+SAVAFA YVHLKLPRVP+G FRVPILPGYRRGTKITFSTP+ V+VTFE+VEK+S+FRR GDDL V++R+S KM KRG  V+VPTLD+G  +      E   G  R    R       RR GG
Sbjct:   83 IGDSIIERYKQAARTGLLSEVLQEGAAVFGALLIKCPLPVSAVAFAAYVHLKLPRVPQGAFRVPILPGYRRGTKITFSTPDGVDVTFELVEKQSQFRRSGDDLFVMLRLSPKMVKRGCVVKVPTLDKGTANFDAAETEGGQGRLRASLARAGHASSQRRRGG 244
[Close]
BLAST of mRNA_H-elongata_contig5936.13447.1 vs. uniprot
Match: A0A484MIQ7_9ASTE (DnaJ_C domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MIQ7_9ASTE)

HSP 1 Score: 70.5 bits (171), Expect = 2.620e-11
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:  199 VPILPGYRRGTKITFST---------PEDVNVTFEVVEKESEFRRYGDDLSVVVRISSKMAKRGGSVRVPTLD-QGKVSMKLVRGEVSDGYERRLPGLGMPRRSGGVEDSSSLRGDLIVHFVV 537
            + + PG+RRGTKITF           PED+    E  +K   F+R GDDL + V+IS   A  G ++ VPTL  + K+ + L    +  G+E+ +PG GMP+   G   +   RGDL + F++
Sbjct:  126 IKVKPGWRRGTKITFERKGDERMGTHPEDIIFVIEE-KKHPVFKREGDDLEIGVQISLAQALTGCTIEVPTLGGEEKMVVNLDNEIIYPGFEKTIPGQGMPKYKEG--QAGRQRGDLRLKFLI 245
[Close]
BLAST of mRNA_H-elongata_contig5936.13447.1 vs. uniprot
Match: A0A484M0W3_9ASTE (DnaJ_C domain-containing protein n=2 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484M0W3_9ASTE)

HSP 1 Score: 70.5 bits (171), Expect = 2.790e-11
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = 1 
Query:  199 VPILPGYRRGTKITFSTPED-------VNVTFEVVEKESE-FRRYGDDLSVVVRISSKMAKRGGS-VRVPTLDQGKVSMKLVRGEVSDGYERRLPGLGMPRRSGGVEDSSS-LRGDLIVHFVV 537
            + + PG+++GTKITF    D        ++TF + EK    F+R GDDL + V I    A  GGS + VP L    +++ L    +  GYE+ +PG GMPR   G+ D     RGDL + F+V
Sbjct:  128 IVVKPGWKKGTKITFEGKGDEKPGMLPADITFVIEEKRHPVFKREGDDLELGVEIPLVQALAGGSTITVPLLGGESMTLDLDDDVIFPGYEKIIPGQGMPRPKKGIVDGGGGHRGDLRLRFMV 250
[Close]
BLAST of mRNA_H-elongata_contig5936.13447.1 vs. uniprot
Match: A0A484MLH1_9ASTE (DnaJ_C domain-containing protein n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484MLH1_9ASTE)

HSP 1 Score: 70.5 bits (171), Expect = 4.900e-11
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:  199 VPILPGYRRGTKITFST---------PEDVNVTFEVVEKESEFRRYGDDLSVVVRISSKMAKRGGSVRVPTLD-QGKVSMKLVRGEVSDGYERRLPGLGMPRRSGGVEDSSSLRGDLIVHFVV 537
            + + PG+RRGTKITF           PED+    E  +K   F+R GDDL + V+IS   A  G ++ VPTL  + K+ + L    +  G+E+ +PG GMP+   G   +   RGDL + F++
Sbjct:  211 IKVKPGWRRGTKITFERKGDERMGTHPEDIIFVIEE-KKHPVFKREGDDLEIGVQISLAQALMGCTIEVPTLGGEEKMVVNLDNEIIYPGFEKTIPGQGMPKYKEG--QAGRQRGDLRLKFLI 330
[Close]
BLAST of mRNA_H-elongata_contig5936.13447.1 vs. uniprot
Match: A0A328DYS7_9ASTE (J domain-containing protein n=1 Tax=Cuscuta australis TaxID=267555 RepID=A0A328DYS7_9ASTE)

HSP 1 Score: 70.5 bits (171), Expect = 5.890e-11
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = 1 
Query:  199 VPILPGYRRGTKITFSTPED-------VNVTFEVVEKESE-FRRYGDDLSVVVRISSKMAKRGGS-VRVPTLDQGKVSMKLVRGEVSDGYERRLPGLGMPRRSGGVEDSSS-LRGDLIVHFVV 537
            + + PG+++GTKITF    D        ++TF + EK    F+R GDDL + V I    A  GGS + VP L    +++ L    +  GYE+ +PG GMPR   G+ D     RGDL + F+V
Sbjct:  266 IVVKPGWKKGTKITFEGKGDEKPGMLPADITFVIEEKRHPVFKREGDDLELGVEIPLVQALAGGSTITVPLLGGESMTLDLDDDVIFPGYEKIIPGQGMPRPKKGIVDGGGGHRGDLRLRFMV 388
[Close]
BLAST of mRNA_H-elongata_contig5936.13447.1 vs. uniprot
Match: S8E0N3_9LAMI (J domain-containing protein n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8E0N3_9LAMI)

HSP 1 Score: 66.2 bits (160), Expect = 8.220e-10
Identity = 42/122 (34.43%), Postives = 66/122 (54.10%), Query Frame = 1 
Query:  199 VPILPGYRRGTKITFSTPED-------VNVTFEVVEKESE-FRRYGDDLSVVVRISSKMAKRGGSVRVPTLDQGKVSMKLVRGEVSDGYERRLPGLGMPRRSGGVEDSSSLRGDLIVHFVVE 540
            + + PG++RGTKITF    D        ++ F + EK+   F+R GDDL + V +    A  G +V VP L  G++++ +    +  GYE+ +PG GMP+   G       RGDL + F+V+
Sbjct:  122 IKVKPGWKRGTKITFEGKGDERPGALPADIIFSIEEKQHPLFKREGDDLELGVEVPLVQALTGCTVPVPLLGGGEITLSID-DIIYPGYEKTIPGEGMPKPKEG------RRGDLRLKFLVD 236
[Close]
BLAST of mRNA_H-elongata_contig5936.13447.1 vs. uniprot
Match: A0A183MGT0_9TREM (J domain-containing protein n=9 Tax=Schistosoma TaxID=6181 RepID=A0A183MGT0_9TREM)

HSP 1 Score: 65.1 bits (157), Expect = 3.530e-9
Identity = 41/125 (32.80%), Postives = 69/125 (55.20%), Query Frame = 1 
Query:  190 TFRVPILPGYRRGTKITFSTPED--------VNVTFEVVEK-ESEFRRYGDDLSVVVRISSKMAKRGGSVRVPTLDQGKVSMKLVRGEVSDGYERRLPGLGMPRRSGGVEDSSSLRGDLIVHFVV 537
            T  + +  G++ GTKITF    D         +V F V ++    F+R G D+  V +IS K A  GG++ +PT+D+G+++++L    +  G  RR+P  G+P     +++ S L GD+IV F +
Sbjct:  191 TVEIEVKKGWKAGTKITFPREGDESIKGNVPADVVFVVKDRTHKHFKREGSDVRYVAKISLKQALCGGTISIPTIDEGQINIQLTE-IIKPGTTRRIPHQGLPF----LKEPSRL-GDMIVEFQI 309
[Close]
BLAST of mRNA_H-elongata_contig5936.13447.1 vs. uniprot
Match: A0A2G9HLL7_9LAMI (Molecular chaperone (DnaJ superfamily) n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HLL7_9LAMI)

HSP 1 Score: 64.3 bits (155), Expect = 7.580e-9
Identity = 41/122 (33.61%), Postives = 65/122 (53.28%), Query Frame = 1 
Query:  199 VPILPGYRRGTKITFSTPED-------VNVTFEVVEKESE-FRRYGDDLSVVVRISSKMAKRGGSVRVPTLDQGKVSMKLVRGEVSDGYERRLPGLGMPRRSGGVEDSSSLRGDLIVHFVVE 540
            + + PG+++GTKITF    D        ++ F + EK    F+R GDDL++ V +    A  G ++ VP L  G++++ +    +  GYE+ +PG GMP    G       RGDL + F+VE
Sbjct:  239 IKVKPGWKKGTKITFEGKGDERPGTLPADIIFSIDEKRHPMFKREGDDLALGVEVPLVQALTGCTIPVPLLGGGQITLSID-DIIYPGYEKIIPGQGMPTSKDG------KRGDLKLKFLVE 353
[Close]
BLAST of mRNA_H-elongata_contig5936.13447.1 vs. uniprot
Match: A0A3Q0KD57_SCHMA (Putative dnaj homolog subfamily B member 4 n=2 Tax=Schistosoma mansoni TaxID=6183 RepID=A0A3Q0KD57_SCHMA)

HSP 1 Score: 62.4 bits (150), Expect = 3.190e-8
Identity = 40/125 (32.00%), Postives = 68/125 (54.40%), Query Frame = 1 
Query:  190 TFRVPILPGYRRGTKITFSTPEDVN--------VTFEVVEK-ESEFRRYGDDLSVVVRISSKMAKRGGSVRVPTLDQGKVSMKLVRGEVSDGYERRLPGLGMPRRSGGVEDSSSLRGDLIVHFVV 537
            T  + +  G++ GTKITF    D N        V F V ++    F+R G D+  V +IS K A  GG++ +PT+D+G+++++L    +  G  +R+   G+P     +++ S L GD+IV F +
Sbjct:  197 TVEIEVKKGWKAGTKITFPREGDENIKGNIPADVVFVVKDRTHKHFKREGSDVRYVAKISLKQALCGGTISIPTIDEGQINLQLTE-IIKPGTTKRISHQGLPF----LKEPSRL-GDMIVEFQI 315
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5936.13447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXU5_ECTSI1.940e-8776.57DnaJ_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L854_9PHAE1.800e-6266.05DnaJ_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A484MIQ7_9ASTE2.620e-1136.59DnaJ_C domain-containing protein n=1 Tax=Cuscuta c... [more]
A0A484M0W3_9ASTE2.790e-1137.40DnaJ_C domain-containing protein n=2 Tax=Cuscuta c... [more]
A0A484MLH1_9ASTE4.900e-1136.59DnaJ_C domain-containing protein n=2 Tax=Cuscuta s... [more]
A0A328DYS7_9ASTE5.890e-1137.40J domain-containing protein n=1 Tax=Cuscuta austra... [more]
S8E0N3_9LAMI8.220e-1034.43J domain-containing protein n=1 Tax=Genlisea aurea... [more]
A0A183MGT0_9TREM3.530e-932.80J domain-containing protein n=9 Tax=Schistosoma Ta... [more]
A0A2G9HLL7_9LAMI7.580e-933.61Molecular chaperone (DnaJ superfamily) n=1 Tax=Han... [more]
A0A3Q0KD57_SCHMA3.190e-832.00Putative dnaj homolog subfamily B member 4 n=2 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5936contigH-elongata_contig5936:8498..11174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score266.2
Seed ortholog evalue1.2e-68
Seed eggNOG ortholog2880.D7FXU5
EggNOG free text desc.DnaJ C terminal domain
EggNOG OGs2F00Z@1,2T195@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHSP40/DnaJ peptide-binding
Ec32 orthologEc-23_001480.1
Exons4
Model size552
Cds size552
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5936.13447.1prot_H-elongata_contig5936.13447.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5936 8498..11174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930962.2929232-CDS-H-elongata_contig5936:8497..86501622930962.2929232-CDS-H-elongata_contig5936:8497..8650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5936 8498..8650 -
1691679641.9137452-CDS-H-elongata_contig5936:8497..86501691679641.9137452-CDS-H-elongata_contig5936:8497..8650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5936 8498..8650 -
1622930962.3128927-CDS-H-elongata_contig5936:9245..93341622930962.3128927-CDS-H-elongata_contig5936:9245..9334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5936 9246..9334 -
1691679641.9306076-CDS-H-elongata_contig5936:9245..93341691679641.9306076-CDS-H-elongata_contig5936:9245..9334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5936 9246..9334 -
1622930962.3311985-CDS-H-elongata_contig5936:10631..108121622930962.3311985-CDS-H-elongata_contig5936:10631..10812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5936 10632..10812 -
1691679641.939884-CDS-H-elongata_contig5936:10631..108121691679641.939884-CDS-H-elongata_contig5936:10631..10812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5936 10632..10812 -
1622930962.3539681-CDS-H-elongata_contig5936:11045..111741622930962.3539681-CDS-H-elongata_contig5936:11045..11174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5936 11046..11174 -
1691679641.9491458-CDS-H-elongata_contig5936:11045..111741691679641.9491458-CDS-H-elongata_contig5936:11045..11174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5936 11046..11174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5936.13447.1

>prot_H-elongata_contig5936.13447.1 ID=prot_H-elongata_contig5936.13447.1|Name=mRNA_H-elongata_contig5936.13447.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=184bp
KKKKIRDSIVERYKQAVRTGLLSEVVQEGAVVLGALLLRCPLPISAVAFA
TYVHLKLPRVPRGTFRVPILPGYRRGTKITFSTPEDVNVTFEVVEKESEF
RRYGDDLSVVVRISSKMAKRGGSVRVPTLDQGKVSMKLVRGEVSDGYERR
LPGLGMPRRSGGVEDSSSLRGDLIVHFVVEDAP*
back to top

mRNA from alignment at H-elongata_contig5936:8498..11174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5936.13447.1 ID=mRNA_H-elongata_contig5936.13447.1|Name=mRNA_H-elongata_contig5936.13447.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2677bp|location=Sequence derived from alignment at H-elongata_contig5936:8498..11174- (Himanthalia elongata Himel1 dioecious)
AAAAAAAAAAAGATACGTGATTCGATCGTGGAACGTTACAAGCAAGCGGT
GCGCACGGGTCTGCTGTCAGAGGTTGTGCAAGAAGGAGCCGTCGTCTTGG
GAGCCCTCCTCCTCAGGTGCCCACTGCCGGTGAGGGTGACGGATGAGATA
GATAAATAGATATCGCACCGTCGACACGGCACCGTCGACCACAAAAGCAG
CAAGTACTGTACTATACTGTACAGTACACGTAAGAAAAACAAAATTATGG
AACTTTCCATTTTGTTTTCGTTTCGTGGAAAAAAAGCATAGAGAACACAA
CGGTAATTATCAACTGTAATCATCAACGGTAATGATTAACGGTATTAATA
AAAAACACGCAGATCTCGGCGGTTGCATTTGCGACCTACGTCCACCTCAA
GTTGCCGCGAGTGCCACGGGGAACGTTCCGGGTACCGATCCTTCCGGGGT
ACCGCCGAGGGACGAAGATCACGTTCTCCACGCCGGAAGATGTCAATGTG
ACGTTCGAGGTGGTCGAGAAGGAGAGCGAATTCCGACGCTACGGTGCGCG
TCTGTCGACGCTGATTTTATCAGAGGGGGGACGAGTTGCCCATTCGCCGA
TTTTTGGTCCCTCTCTGTCGGGGTTTCCTCGTCTTCGATGTTTTTTCGTC
AATCCATCACCGTTTTGTTTTGTCGAGGTTTTACCCGTCTAAGGCCTGAT
AGCAGGACATAACTGGCGTACTGCCTAAAGCGCCGTCGACTGTCGACTGT
CGACTGTTTAATTTATGTTTTATCTGGCCGCGAATGATTGGCTAACTGGC
AGATGGCTGACAAACTGATTGGCTAACTGGCTGGCTGGAGTCTATACTCG
CAGGACTAGTCAGTCTTTAAGTCTATGTATGTATGTACTCTATGTATCTA
AAGTTTAGGTATGTATAGATCTATGTGTAATATTCATTAAAGAATTGCCC
TGGATTGCACCTCTCACGGTGGTAAGAAGGCGTGGATGTTCGGAGGGTTG
GGATGAGTTCATAGGTGTTTTTTTGAAGAATAATAATACACTCGGAAGCA
GTATATGCATACTTAATAATGAACTTATTAATGTAAACTATAGACATATT
GTACTATAGACATACCTAGTATTGTACTAAAGACATATTGTACTAAAGGA
GTGTACACACAGTAGACTAATAAAATGATCGGTACATGCTGAAGGTTAGA
CACACACTAATAACAGACACATGATGCTCAAGTAATTAACCCCTATGGAA
CTCGATCTGTTTTTTTACATACTAAATTCATATAAAACTTGAAATCCAGT
TCCAAAAGGGTTAACACAGGCTGAAGTAATAATCGTTACATGCTGAAGTA
GCATAGAAACTTTGAAGGACTTTTTTTTCTCTCTCTCTATATATATACTT
CGGTATACATCTCTCAATTATATTTAGGATTTTCCGATTTTCCGAGTGCG
ATATTCATAGTGATCTTTTTCTAGCATGCGCTGTGTTGAGGTATCAATCA
CGCTTGGGCGGGCGGGTCGAGAGTCTTCCTCCCAATGCAGGCATTGCGTG
TTTTCTTTATCTCCCCTCTCTTTTTCAACCTCCGCTCCTCTTCGAAACTG
GAGTAGACAGGATAGGAAAAGCAGTTTTGCGTCATTTTTGGCTAAGTATT
AGTCTAATAAATAGAAATGAAAGAAAGACGGAAATAGCGATTGGCCAATG
GTCTTACTATCTAATCATGTAGACACGATGATACTACTCCCCCGACGGCT
CGCGGCCAATAGTCTTACAGCTTAGGCATGTAAACCTTGAGTACAACCCC
ACCCCCCTCTCGTGAAAACACGCCTCCTTCTTAACCTCAGGCGATGACCT
CTCCGTGGTGGTTCGAATCTCATCCAAAATGGCGAAGCGTGGGGGCAGCG
TCAGGGTGCCGACGCTCGACCAAGGAAAGGTAAGGATGTCGAGCTGCAAT
CCTCAAACTCGATCCGATTCTGCTGCCGATGCACCCACCCAAACCCGCCA
CGTCCCTTCCCGTCCCCCTTGCATACCGTACGAAGCATGGATTCCCCCGC
GCCCTAGTCTCCGATGTATTTTCATACCATTGACCGTGTGCCGAGGTGTT
CTTTGGTGACGAAGAAATCATCTTCCCGGGGGGTTGTTCGGTGGACTTCA
CCCCACTCTGTTGCGCAAACACGCATCTTTAATGCGCCCCGATAGACGAC
CTCGTAAGGGTTGAGTCGACAACACAAATCCCCGGAAGGGACTTATCCTC
TAATAGCAGCACATTTTTTTTTAACCAGGTCGAAAAACGCCTCTTTGTTT
CCAGGGCGCTCTACATTGGATTAGCCTTATTGTTGGGTCGTGACACACCA
CGGTGTTCCACAGGAAGACTTTTCTTATAAAACCAAAATAAATATTTGCC
ACACAAGGAAGAATCGTTCTTCCGGCCAATAGGCATTTTTTTTCGCTTGC
ATCAGAATAATTTTCTCGGAATGTTTTGGTCACCTTGCCCCTGGTCTATA
TTCGCCGCGTGCGTGCATCCGCAGGTTTCTATGAAGCTGGTGCGGGGCGA
GGTCAGCGATGGCTACGAGCGCAGACTGCCCGGACTCGGGATGCCGCGGC
GGAGCGGGGGGGTCGAGGATAGTAGTTCTCTTCGAGGAGATCTCATCGTC
CACTTCGTTGTCGAGGACGCTCCCTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig5936:8498..11174-

>mRNA_H-elongata_contig5936.13447.1 ID=mRNA_H-elongata_contig5936.13447.1|Name=mRNA_H-elongata_contig5936.13447.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1104bp|location=Sequence derived from alignment at H-elongata_contig5936:8498..11174- (Himanthalia elongata Himel1 dioecious)
AAAAAAAAAAAGATACGTGATTCGATCGTGGAACGTTACAAGCAAGCGGT
GCGCACGGGTCTGCTGTCAGAGGTTGTGCAAGAAGGAGCCGTCGTCTTGG
GAGCCCTCCTCCTCAGGTGCCCACTGCCGAAAAAAAAAAAGATACGTGAT
TCGATCGTGGAACGTTACAAGCAAGCGGTGCGCACGGGTCTGCTGTCAGA
GGTTGTGCAAGAAGGAGCCGTCGTCTTGGGAGCCCTCCTCCTCAGGTGCC
CACTGCCGATCTCGGCGGTTGCATTTGCGACCTACGTCCACCTCAAGTTG
CCGCGAGTGCCACGGGGAACGTTCCGGGTACCGATCCTTCCGGGGTACCG
CCGAGGGACGAAGATCACGTTCTCCACGCCGGAAGATGTCAATGTGACGT
TCGAGGTGGTCGAGAAGGAGAGCGAATTCCGACGCTACGATCTCGGCGGT
TGCATTTGCGACCTACGTCCACCTCAAGTTGCCGCGAGTGCCACGGGGAA
CGTTCCGGGTACCGATCCTTCCGGGGTACCGCCGAGGGACGAAGATCACG
TTCTCCACGCCGGAAGATGTCAATGTGACGTTCGAGGTGGTCGAGAAGGA
GAGCGAATTCCGACGCTACGGCGATGACCTCTCCGTGGTGGTTCGAATCT
CATCCAAAATGGCGAAGCGTGGGGGCAGCGTCAGGGTGCCGACGCTCGAC
CAAGGAAAGGCGATGACCTCTCCGTGGTGGTTCGAATCTCATCCAAAATG
GCGAAGCGTGGGGGCAGCGTCAGGGTGCCGACGCTCGACCAAGGAAAGGT
TTCTATGAAGCTGGTGCGGGGCGAGGTCAGCGATGGCTACGAGCGCAGAC
TGCCCGGACTCGGGATGCCGCGGCGGAGCGGGGGGGTCGAGGATAGTAGT
TCTCTTCGAGGAGATCTCATCGTCCACTTCGTTGTCGAGGACGCTCCCTA
GGTTTCTATGAAGCTGGTGCGGGGCGAGGTCAGCGATGGCTACGAGCGCA
GACTGCCCGGACTCGGGATGCCGCGGCGGAGCGGGGGGGTCGAGGATAGT
AGTTCTCTTCGAGGAGATCTCATCGTCCACTTCGTTGTCGAGGACGCTCC
CTAG
back to top