prot_H-elongata_contig117163.1344.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig117163.1344.1
Unique Nameprot_H-elongata_contig117163.1344.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length113
Homology
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A1Y1MJE9_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1MJE9_PHOPY)

HSP 1 Score: 94.7 bits (234), Expect = 2.540e-20
Identity = 52/113 (46.02%), Postives = 75/113 (66.37%), Query Frame = 0
Query:    2 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQV-KEFMTLPIDVAIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTFE 113
            W +R Q   A +SSE+EYVALA  V+  LF   + +E + L I   I I+EDN+S I+MA +   +RRT+H+DIKH+ + D +E   +H++Y+ S EQ ADILTKS+ +  FE
Sbjct:  867 WKTRKQCTVALSSSEAEYVALATCVSNCLFFGHICQEILHLNI-FPIVINEDNQSCIRMA-STLETRRTKHIDIKHHYIRDCVESERIHIQYIPSNEQQADILTKSLSLSKFE 977          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.600e-20
Identity = 43/112 (38.39%), Postives = 75/112 (66.96%), Query Frame = 0
Query:    2 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDVA-IKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 112
            WFSR QK    +++E EYVA+A+++  +LFLRQV   M L  D++ I + EDN+ AI++A N  ++  ++H+D++H+ + + +E   + + +V S  QHAD LTK++  ++F
Sbjct:  252 WFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 363          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.070e-19
Identity = 42/112 (37.50%), Postives = 73/112 (65.18%), Query Frame = 0
Query:    2 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 112
            WFSR QK    +++E+EYVA+A+++  +LFLRQV  FM     +  I + EDN+ AI++A N  ++  ++H+D++H+ + + +E   + + +V S  QHAD LTK+   ++F
Sbjct:  189 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKATSKESF 300          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.800e-19
Identity = 42/112 (37.50%), Postives = 74/112 (66.07%), Query Frame = 0
Query:    2 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 112
            WFSR QK    +++E+EYVA+A+++  +LFLRQV  FM     +  I + EDN+ AI++A N  ++  ++H+D++H+ + + +E   + + +V S  QHAD LTK++  ++F
Sbjct: 1350 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 1461          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.410e-19
Identity = 42/112 (37.50%), Postives = 73/112 (65.18%), Query Frame = 0
Query:    2 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 112
            WFSR QK    +++E+EYVA A+++  +LFLRQV  FM     +  I + EDN+ AI++A N  ++  ++H+D++H+ + + +E   + + +V S  QHAD LTK++  ++F
Sbjct:  291 WFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 402          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5K6X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 6.780e-19
Identity = 44/108 (40.74%), Postives = 72/108 (66.67%), Query Frame = 0
Query:    1 SWFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSV 107
            SWFSR QK    +++E+EYVAL ++V  +LFLRQ+  FM   + +  I + EDN+ AI++A+N  S+  ++H+D++H+ + + +E   + V +V S  Q AD LTKS+
Sbjct:  188 SWFSRTQKYVTLSTTETEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 295          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 7.930e-19
Identity = 40/112 (35.71%), Postives = 71/112 (63.39%), Query Frame = 0
Query:    2 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 112
            WFSR QK    +++E+EYVA+A+++  +LFLRQV  FM     +  I + EDN   I++A N  ++  ++H+D++H+ + + +E   + + +V S  QH D LTK++  ++F
Sbjct:   47 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESF 158          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.050e-18
Identity = 43/112 (38.39%), Postives = 73/112 (65.18%), Query Frame = 0
Query:    2 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 112
            WFSR QK     ++ESEYVA+A+++  +LFLRQV  FM     +  I + EDN+ AI++A N  ++  ++H+D++H+ + + +E   + + +V S  QHAD LTK++  ++F
Sbjct:  706 WFSRTQKCVTLYTTESEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 817          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.380e-18
Identity = 42/112 (37.50%), Postives = 73/112 (65.18%), Query Frame = 0
Query:    2 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 112
            WFSR QK    +++E+EYVA+A+++  +LFLRQV  FM     +  I + EDN+ AI++A N  ++  ++H+D +H+++   +E   + + +V S  QHAD LTK++  ++F
Sbjct:  171 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTKAISKESF 282          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.110e-18
Identity = 41/112 (36.61%), Postives = 73/112 (65.18%), Query Frame = 0
Query:    2 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 112
            WFSR QK    +++E+EYVA+A+++  +LFLRQV  FM     +  I + EDN+ AI++A N  ++  ++H+D++H+ + + +E   + +  V +  QHAD LTK++  ++F
Sbjct:  199 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESF 310          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1MJE9_PHOPY2.540e-2046.02Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KJP2_9PHAE4.600e-2038.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K684_9PHAE4.070e-1937.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHY5_9PHAE5.800e-1937.50Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3H4_9PHAE6.410e-1937.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6X8_9PHAE6.780e-1940.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT9_9PHAE7.930e-1935.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQN5_9PHAE1.050e-1838.39Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K8K2_9PHAE1.380e-1837.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE2.110e-1836.61Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..84
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 1..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117163contigH-elongata_contig117163:1719..2057 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117163.1344.1mRNA_H-elongata_contig117163.1344.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig117163 1719..2057 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig117163.1344.1 ID=prot_H-elongata_contig117163.1344.1|Name=mRNA_H-elongata_contig117163.1344.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
SWFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDVAIKIH
EDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHA
DILTKSVDVKTFE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like