mRNA_H-elongata_contig59333.13445.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59333.13445.1
Unique NamemRNA_H-elongata_contig59333.13445.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig59333.13445.1 vs. uniprot
Match: D8LCM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM2_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 4.220e-33
Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 FQKLLDLHAEIVSKPWTWYAAWPPRFYRRLRQIQVLEYHLFRSVFVRLNRSLLTPAFDYARYSASIVNEIIIVFFDVNWASWLLAVVILFITLPISN 291
            F +L +L  E+    W  Y   PPR++  LRQ QVLEYHLFRSVF+RLNRSLLTPAFD+++YSA+IV+E I+VFFDV WASWLLAVV+LF T+PI++
Sbjct:   72 FDRLRELPGEMAPPDWKGYPGGPPRYFTGLRQAQVLEYHLFRSVFLRLNRSLLTPAFDFSKYSAAIVDEWIVVFFDVGWASWLLAVVVLFFTVPITD 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59333.13445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCM2_ECTSI4.220e-3363.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59333contigH-elongata_contig59333:2566..3605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930962.0573149-CDS-H-elongata_contig59333:2565..26391622930962.0573149-CDS-H-elongata_contig59333:2565..2639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59333 2566..2639 +
1691679641.8642337-CDS-H-elongata_contig59333:2565..26391691679641.8642337-CDS-H-elongata_contig59333:2565..2639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59333 2566..2639 +
1622930962.0720758-CDS-H-elongata_contig59333:3373..36051622930962.0720758-CDS-H-elongata_contig59333:3373..3605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59333 3374..3605 +
1691679641.8749352-CDS-H-elongata_contig59333:3373..36051691679641.8749352-CDS-H-elongata_contig59333:3373..3605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59333 3374..3605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59333.13445.1prot_H-elongata_contig59333.13445.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59333 2566..3605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59333.13445.1

>prot_H-elongata_contig59333.13445.1 ID=prot_H-elongata_contig59333.13445.1|Name=mRNA_H-elongata_contig59333.13445.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
FQKLLDLHAEIVSKPWTWYAAWPPRFYRRLRQIQVLEYHLFRSVFVRLNR
SLLTPAFDYARYSASIVNEIIIVFFDVNWASWLLAVVILFITLPISNDGV
S*
back to top

mRNA from alignment at H-elongata_contig59333:2566..3605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59333.13445.1 ID=mRNA_H-elongata_contig59333.13445.1|Name=mRNA_H-elongata_contig59333.13445.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1040bp|location=Sequence derived from alignment at H-elongata_contig59333:2566..3605+ (Himanthalia elongata Himel1 dioecious)
TTCCAGAAGCTGCTGGACTTGCACGCTGAGATCGTGTCCAAGCCCTGGAC
TTGGTACGCTGCGTGGCCACCTAGGTACTGCGATTGTCAACCTATATAAA
AGTATTGTTTCTAAATTTGTATGTATATCAGTGTTTGTGTGTATTTATTA
ACATATTCTAACCGTAAAAATTGTCCCTGGCATAGTAACCTTTCTATGCT
GCTCGTATAGATACTCTTCCCTACGGGGCATCAGTGATGGCTACCGCGCA
ATCCAGCCCTGTAATATGTTAATAGCCACTATATTCCACTGCATTTAACC
AATCGGGGGGGTTAATGTGTGGTTATCAGATATAGCAGAGCCAATCATGC
TCGTGGTCAACTTCACAGGAGTGAACATTATTTTCCCTGTCCCCGTACGC
AGGCTGAGAAAATGATCTCTTACGAGACTGGTTTGGCCGTCATGTATACC
GTTACATTTTTTGGCAATCTTATCTGTTGTGTGTGTTTTTTTATGTCATT
TGGATGAAAAATTCTACAGTGCCTGGTAGAATTATGCTATTAACAAAACA
GGTCAGGTGCAATCTTGTACGAAATACCGTAATGTACGCTGGTGTACCGA
ATTCCCACGGTAGTGGCACTACTTGCAGCATGCGGGAGAGCGACTCCTGC
CTCACATCATCATAACTATTATTAGTCCTCTTGTTCTGCACATAATCAGG
TAACATACCTAACACAAGCATATCACCTTGTATAGGAAACAGCGCAACGC
TCCCCCTCCCCCCTCCTCCGCTTCCCCTAATCCACCTCGTTCTCTTCCTG
GTGTTCAGGTTCTACCGGAGACTGAGGCAAATCCAGGTTCTCGAGTACCA
CCTCTTCCGCTCGGTGTTCGTACGTCTTAACCGCTCGCTGTTGACACCGG
CCTTCGACTACGCGAGGTACTCCGCAAGCATCGTGAATGAGATTATCATC
GTGTTCTTCGATGTGAATTGGGCCAGCTGGCTTCTCGCCGTGGTGATCCT
GTTCATAACGCTTCCCATCTCCAACGACGGGGTGAGCTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig59333:2566..3605+

>mRNA_H-elongata_contig59333.13445.1 ID=mRNA_H-elongata_contig59333.13445.1|Name=mRNA_H-elongata_contig59333.13445.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig59333:2566..3605+ (Himanthalia elongata Himel1 dioecious)
TTCCAGAAGCTGCTGGACTTGCACGCTGAGATCGTGTCCAAGCCCTGGAC
TTGGTACGCTGCGTGGCCACCTAGTTCCAGAAGCTGCTGGACTTGCACGC
TGAGATCGTGTCCAAGCCCTGGACTTGGTACGCTGCGTGGCCACCTAGGT
TCTACCGGAGACTGAGGCAAATCCAGGTTCTCGAGTACCACCTCTTCCGC
TCGGTGTTCGTACGTCTTAACCGCTCGCTGTTGACACCGGCCTTCGACTA
CGCGAGGTACTCCGCAAGCATCGTGAATGAGATTATCATCGTGTTCTTCG
ATGTGAATTGGGCCAGCTGGCTTCTCGCCGTGGTGATCCTGTTCATAACG
CTTCCCATCTCCAACGACGGGGTGAGCTAGGTTCTACCGGAGACTGAGGC
AAATCCAGGTTCTCGAGTACCACCTCTTCCGCTCGGTGTTCGTACGTCTT
AACCGCTCGCTGTTGACACCGGCCTTCGACTACGCGAGGTACTCCGCAAG
CATCGTGAATGAGATTATCATCGTGTTCTTCGATGTGAATTGGGCCAGCT
GGCTTCTCGCCGTGGTGATCCTGTTCATAACGCTTCCCATCTCCAACGAC
GGGGTGAGCTAG
back to top