mRNA_H-elongata_contig5930.13443.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5930.13443.1
Unique NamemRNA_H-elongata_contig5930.13443.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5930.13443.1 vs. uniprot
Match: D8LN90_ECTSI (UTP--glucose-1-phosphate uridylyltransferase n=4 Tax=Phaeophyceae TaxID=2870 RepID=D8LN90_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.650e-27
Identity = 57/79 (72.15%), Postives = 69/79 (87.34%), Query Frame = 3 
Query:    3 VVALDSKKYKLVQQLDAAFAAGTPSLIGCDRLTMNGVIHLAGDTVFKGTCTFVNKSKEIRILPAVEYENANVDLTEAHG 239
            VV+LD+KKYKLVQQLDAA  AGTPSLIGCDRLT++G + +AGDTVFKGTC+ VNKS E ++LPA EY +A+VDL+EA G
Sbjct:  402 VVSLDAKKYKLVQQLDAAMTAGTPSLIGCDRLTVSGDVQMAGDTVFKGTCSVVNKSGESKVLPAGEYADASVDLSEAEG 480
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BLAST of mRNA_H-elongata_contig5930.13443.1 vs. uniprot
Match: A0A7R9U9H7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9H7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.190e-16
Identity = 39/79 (49.37%), Postives = 59/79 (74.68%), Query Frame = 3 
Query:    3 VVALDSKKYKLVQQLDAAFAAGTPSLIGCDRLTMNGVIHLAGDTVFKGTCTFVNKSKEIRILPAVEYENANVDLTEAHG 239
            +V+LDSKKYKLVQ L+AA A G PSL+ CDRL++ G+++++   +F G+ + VN S E ++LPA  Y + ++DLT+A G
Sbjct:   58 IVSLDSKKYKLVQHLEAATAGGIPSLVQCDRLSVKGLVYMSRKNIFVGSVSIVNSSDEPKVLPAGVYHDTDIDLTDAPG 136
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BLAST of mRNA_H-elongata_contig5930.13443.1 vs. uniprot
Match: W7T5H8_9STRA (UTP--glucose-1-phosphate uridylyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T5H8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.760e-16
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 3 
Query:    3 VVALDSKKYKLVQQLDAAFAAGTPSLIGCDRLTMNGVIHLAGDTVFKGTCTFVNKSKEIRILPAVEYENANVDLTEAHGA*FIAPFLL 266
            ++ LD K YKLVQQL+AA   GTPSL+G DRLT+ G + L+   VF+GT T  NK  E ++LP   Y++A+VDLT A G   + P ++
Sbjct:  398 LINLDDKAYKLVQQLEAATQGGTPSLVGADRLTIQGQVWLSSGVVFQGTTTVTNKGDEPKVLPKGVYKDASVDLTAAPGLGALRPTIV 485
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BLAST of mRNA_H-elongata_contig5930.13443.1 vs. uniprot
Match: A0A7S4NAP1_9STRA (UTP--glucose-1-phosphate uridylyltransferase (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NAP1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.870e-14
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 3 
Query:    3 VVALDSKKYKLVQQLDAAFAAGTPSLIGCDRLTMNGVIHLAGDTVFKGTCTFVNKSKEIRILPAVEYENANVDLTEAHG 239
            VVA+DSKKYKLV++L+ A A+G PSL+GC RLT+ G++ +   T F G  +  N S E + +P  E ++A +DLT+A G
Sbjct:  392 VVAIDSKKYKLVEKLEEATASGVPSLVGCKRLTIKGLVRMGKSTKFVGEVSITNSSDESKAVPTGEVKDATMDLTDAVG 470
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BLAST of mRNA_H-elongata_contig5930.13443.1 vs. uniprot
Match: A0A836CGV2_9STRA (UTP--glucose-1-phosphate uridylyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGV2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.020e-14
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 3 
Query:    3 VVALDSKKYKLVQQLDAAFAAGTPSLIGCDRLTMNGVIHLAGDTVFKGTCTFVNKSKEIRILPAVEYENANVDLTEAHG 239
            +V LDSKK+KLVQQLDAA A G PSLI C+R T+ G++ L+   + KG  T  N S E++ L   EY++   DLT+A G
Sbjct:  399 LVDLDSKKFKLVQQLDAATARGVPSLIACERFTVKGLVALSARCIIKGDVTVKNTSDEVKTLAPREYKDETCDLTDAPG 477
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BLAST of mRNA_H-elongata_contig5930.13443.1 vs. uniprot
Match: A0A7S2I286_9STRA (UTP--glucose-1-phosphate uridylyltransferase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I286_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.570e-13
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 3 
Query:    3 VVALDSKKYKLVQQLDAAFAAGTPSLIGCDRLTMNGVIHLAGDTVFKGTCTFVNKSKEIRILPAVEYENANVDLTEAHGA*FIAP 257
            V+A+DSKKYKLV +L+AA A G PSL+ C RLT+ G++ ++  T F G  + VN S E + +P  E ++ ++DLT++ G   + P
Sbjct:  391 VMAIDSKKYKLVDKLEAATAGGIPSLVNCKRLTIKGLVRMSKKTSFVGEVSVVNTSDEAKFIPVGEVKDTSLDLTDSPGLGALKP 475
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BLAST of mRNA_H-elongata_contig5930.13443.1 vs. uniprot
Match: A0A7S2I2V0_9STRA (UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I2V0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.710e-13
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 3 
Query:    3 VVALDSKKYKLVQQLDAAFAAGTPSLIGCDRLTMNGVIHLAGDTVFKGTCTFVNKSKEIRILPAVEYENANVDLTEAHGA*FIAP 257
            V+A+DSKKYKLV +L+AA A G PSL+ C RLT+ G++ ++  T F G  + VN S E + +P  E ++ ++DLT++ G   + P
Sbjct:  391 VMAIDSKKYKLVDKLEAATAGGIPSLVNCKRLTIKGLVRMSKKTSFVGEVSVVNTSDEAKFIPVGEVKDTSLDLTDSPGLGALKP 475
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BLAST of mRNA_H-elongata_contig5930.13443.1 vs. uniprot
Match: A0A024GEE8_9STRA (UTP--glucose-1-phosphate uridylyltransferase n=3 Tax=Albugo TaxID=65356 RepID=A0A024GEE8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.660e-13
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 3 
Query:    3 VVALDSKKYKLVQQLDAAFAAGTPSLIGCDRLTMNGVIHLAGDTVFKGTCTFVNKSKEIRILPAVEYENANVDLTEAHG 239
            +VALDSK +KLVQQL+AA    TPSLI C RL + G +  A D VF+G  T VN S E + + +  Y++  VDLTE  G
Sbjct:  397 IVALDSKTFKLVQQLEAALRGNTPSLIKCSRLKVTGDVCFAPDVVFEGEVTVVNNSSEPKTISSGTYKDTTVDLTEQKG 475
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BLAST of mRNA_H-elongata_contig5930.13443.1 vs. uniprot
Match: A0A2P4YJM6_9STRA (Phosphoglucomutase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJM6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.840e-12
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 3 
Query:    3 VVALDSKKYKLVQQLDAAFAAGTPSLIGCDRLTMNGVIHLAGDTVFKGTCTFVNKSKEIRILPAVEYENANVDLTEAHG 239
            +V+LDSK +KLVQQL+AA     PSLI CDRL + G +  A   VF+G+   VNKS E + + A  Y++  VDLTE  G
Sbjct:  152 IVSLDSKNFKLVQQLEAAVRGNVPSLIKCDRLKITGNVGFAPGVVFEGSVEVVNKSSEQKTVLAGTYKDTTVDLTEQKG 230
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BLAST of mRNA_H-elongata_contig5930.13443.1 vs. uniprot
Match: H3HD79_PHYRM (UTP--glucose-1-phosphate uridylyltransferase n=31 Tax=Peronosporaceae TaxID=4777 RepID=H3HD79_PHYRM)

HSP 1 Score: 76.6 bits (187), Expect = 3.010e-12
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 3 
Query:    3 VVALDSKKYKLVQQLDAAFAAGTPSLIGCDRLTMNGVIHLAGDTVFKGTCTFVNKSKEIRILPAVEYENANVDLTEAHG 239
            +V+LDSK +KLVQQL+AA     PSLI CDRL + G +  A   VF+G+   VNKS E + + A  Y++  VDLTE  G
Sbjct:  396 IVSLDSKNFKLVQQLEAAVRGNVPSLIKCDRLKITGNVGFAPGVVFEGSVEVVNKSSEQKTVLAGTYKDTTVDLTEQKG 474
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5930.13443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D8LN90_ECTSI2.650e-2772.15UTP--glucose-1-phosphate uridylyltransferase n=4 T... [more]
A0A7R9U9H7_9STRA3.190e-1649.37Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7T5H8_9STRA4.760e-1648.86UTP--glucose-1-phosphate uridylyltransferase n=2 T... [more]
A0A7S4NAP1_9STRA3.870e-1448.10UTP--glucose-1-phosphate uridylyltransferase (Frag... [more]
A0A836CGV2_9STRA6.020e-1450.63UTP--glucose-1-phosphate uridylyltransferase-domai... [more]
A0A7S2I286_9STRA2.570e-1343.53UTP--glucose-1-phosphate uridylyltransferase (Frag... [more]
A0A7S2I2V0_9STRA2.710e-1343.53UTP--glucose-1-phosphate uridylyltransferase n=1 T... [more]
A0A024GEE8_9STRA3.660e-1350.63UTP--glucose-1-phosphate uridylyltransferase n=3 T... [more]
A0A2P4YJM6_9STRA2.840e-1249.37Phosphoglucomutase (Fragment) n=1 Tax=Phytophthora... [more]
H3HD79_PHYRM3.010e-1249.37UTP--glucose-1-phosphate uridylyltransferase n=31 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5930contigH-elongata_contig5930:9469..10551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue3e-08
Seed eggNOG ortholog2880.D8LN90
Preferred namePGM2
KEGG rclassRC00002,RC00408
KEGG koko:K00963,ko:K01835
KEGG ReactionR00289,R00959,R01057,R08639
KEGG Pathwayko00010,ko00030,ko00040,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00040,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG ModuleM00129,M00361,M00362,M00549
GOsGO:0000271,GO:0003674,GO:0003824,GO:0004614,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005982,GO:0005996,GO:0006006,GO:0006012,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009250,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009581,GO:0009582,GO:0009590,GO:0009605,GO:0009628,GO:0009629,GO:0009987,GO:0010035,GO:0010038,GO:0010319,GO:0015980,GO:0016020,GO:0016051,GO:0016052,GO:0016853,GO:0016866,GO:0016868,GO:0019252,GO:0019318,GO:0019320,GO:0019388,GO:0031967,GO:0031975,GO:0033692,GO:0034637,GO:0034645,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0046686,GO:0050896,GO:0051606,GO:0055114,GO:0071704,GO:0071944,GO:1901575,GO:1901576
EggNOG free text desc.Utp--glucose-1-phosphate uridylyltransferase
EggNOG OGsCOG0033@1,COG4284@1,KOG0625@2759,KOG2638@2759
EC2.7.7.9,5.4.2.2
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size759
Cds size144
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5930.13443.1prot_H-elongata_contig5930.13443.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5930 9570..10037 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.8981652-UTR-H-elongata_contig5930:9468..95691622930961.8981652-UTR-H-elongata_contig5930:9468..9569Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5930 9469..9569 +
1691679641.781952-UTR-H-elongata_contig5930:9468..95691691679641.781952-UTR-H-elongata_contig5930:9468..9569Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5930 9469..9569 +
1622930961.9476814-UTR-H-elongata_contig5930:10037..105511622930961.9476814-UTR-H-elongata_contig5930:10037..10551Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5930 10038..10551 +
1691679641.8160164-UTR-H-elongata_contig5930:10037..105511691679641.8160164-UTR-H-elongata_contig5930:10037..10551Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5930 10038..10551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.9111323-CDS-H-elongata_contig5930:9569..96111622930961.9111323-CDS-H-elongata_contig5930:9569..9611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5930 9570..9611 +
1691679641.7978048-CDS-H-elongata_contig5930:9569..96111691679641.7978048-CDS-H-elongata_contig5930:9569..9611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5930 9570..9611 +
1622930961.9286985-CDS-H-elongata_contig5930:9935..100371622930961.9286985-CDS-H-elongata_contig5930:9935..10037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5930 9936..10037 +
1691679641.8076365-CDS-H-elongata_contig5930:9935..100371691679641.8076365-CDS-H-elongata_contig5930:9935..10037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5930 9936..10037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5930.13443.1

>prot_H-elongata_contig5930.13443.1 ID=prot_H-elongata_contig5930.13443.1|Name=mRNA_H-elongata_contig5930.13443.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MNGVIHLAGDTVFKGTCTFVNKSKEIRILPAVEYENANVDLTEAHGA*
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mRNA from alignment at H-elongata_contig5930:9469..10551+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5930.13443.1 ID=mRNA_H-elongata_contig5930.13443.1|Name=mRNA_H-elongata_contig5930.13443.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1083bp|location=Sequence derived from alignment at H-elongata_contig5930:9469..10551+ (Himanthalia elongata Himel1 dioecious)
CGGTGGTGGCCCTAGACTCGAAGAAGTACAAACTCGTGCAGCAGCTCGAC
GCCGCCTTTGCTGCCGGAACTCCCAGTCTGATCGGATGCGACCGCCTCAC
CATGAACGGGGTTATTCACCTAGCTGGGGACACCGTATTCAAGGTGCAAC
CCACCCCTTGCGGGCTATTACCCGTGTAGATATCATAATTGAGTGGCGAA
TTCTTGGTATTTTTGCCCAGACGCTGATAAATACAAGTGAAAATGCCTGA
GGCGTAACATTTGCCGGCATAATAAAGGTTTTGACATATTTTAGTCACAA
CCGTCGAAAAATGGCTCATCTGTCTGCTTACCTTACCATAAACAGGATTT
GACAACCATCTGGTTGATTCATCCTAAGCTGTTTTCAACACGATGTAACG
TGAGTGCGCCAAAAACCTCTAAACCTAACGTTTTCCGCCTTTTGTGCGGG
CTGTCGCTCGGCCTCAGGGTACGTGTACCTTTGTGAACAAGTCTAAGGAG
ATCAGGATCCTGCCCGCTGTAGAGTACGAAAACGCCAACGTCGACCTCAC
CGAGGCTCACGGTGCGTGATTTATAGCTCCTTTTCTGCTTTGTTGAGTTT
TATCTTCTCTGTTGCGATTCCGGATTCACCAATCTCGAAACGATATTTGA
ATCGTATGGGTTTATAAATCAACGTGTATATTGTGTGCAATATAGCAAGT
CCAGTACAGATTGTTTCGGTACGCAGCTTACTAATTTGTCGTGTAGGGCT
ATAATAATATGCCGTGTAGGGCTAATAATATGCCGGTTGTACTATCGTAC
AGTACTGTACCTTGAAAGAGATTATGCGGTTCCGCTTTTTGAGCTCTTTT
TGCTGAGGGGCGGTTCATGTCGGCTAAGCATCACTTGATTTTTGTATGTT
GCGGGATGATAGCAACAGTTATGCTAGATATATTTATATATATATATATA
TAAATATATCTCACGGAGATCGATTATCTTTCGCTGGAAGGGCATTATTT
TTGGGGGTGCCTGAAAGATTTTACGGCATATATTTTGATGACTTTGTGCT
TGGGTAGTGTCCCATTTGGTCGCTGCAACGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig5930:9469..10551+

>mRNA_H-elongata_contig5930.13443.1 ID=mRNA_H-elongata_contig5930.13443.1|Name=mRNA_H-elongata_contig5930.13443.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig5930:9469..10551+ (Himanthalia elongata Himel1 dioecious)
ATGAACGGGGTTATTCACCTAGCTGGGGACACCGTATTCAAGATGAACGG
GGTTATTCACCTAGCTGGGGACACCGTATTCAAGGGTACGTGTACCTTTG
TGAACAAGTCTAAGGAGATCAGGATCCTGCCCGCTGTAGAGTACGAAAAC
GCCAACGTCGACCTCACCGAGGCTCACGGTGCGTGAGGTACGTGTACCTT
TGTGAACAAGTCTAAGGAGATCAGGATCCTGCCCGCTGTAGAGTACGAAA
ACGCCAACGTCGACCTCACCGAGGCTCACGGTGCGTGA
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