mRNA_H-elongata_contig59299.13441.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59299.13441.1
Unique NamemRNA_H-elongata_contig59299.13441.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: D7FXT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT4_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 2.000e-62
Identity = 89/109 (81.65%), Postives = 99/109 (90.83%), Query Frame = 1
Query:   13 QSCSLPGGPTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPYFPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEHSS 339
            Q+CSLPGGPTTGWRRDG+CSTDDND GQHCVCSEVT+EFL+YTKAQGNDLSTP  P+FPGL  GDRWCLCSSRWLQAQR GKAP VVLESTH+KA++V+ L LL E+SS
Sbjct:   32 QACSLPGGPTTGWRRDGYCSTDDNDRGQHCVCSEVTQEFLDYTKAQGNDLSTPL-PHFPGLKAGDRWCLCSSRWLQAQRAGKAPLVVLESTHEKAMEVVPLALLKEYSS 139          
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A6H5JIX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX8_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 3.020e-61
Identity = 87/109 (79.82%), Postives = 99/109 (90.83%), Query Frame = 1
Query:   13 QSCSLPGGPTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPYFPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEHSS 339
            ++CSLPGGPTTGWRRDG+CSTDDND GQHCVCSEVT+EFL+YTKAQGNDLSTP  P+FPGL  GDRWCLCSSRWLQAQR GKAP VVL+STH+KA++V+ L LL E+SS
Sbjct:   40 KACSLPGGPTTGWRRDGYCSTDDNDRGQHCVCSEVTQEFLDYTKAQGNDLSTPL-PHFPGLKAGDRWCLCSSRWLQAQRAGKAPLVVLDSTHEKAMEVVPLALLKEYSS 147          
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A2T2RGJ0_9CYAN (DUF2237 domain-containing protein n=1 Tax=Cyanobacteria bacterium SW_9_44_58 TaxID=1919144 RepID=A0A2T2RGJ0_9CYAN)

HSP 1 Score: 145 bits (365), Expect = 1.140e-42
Identity = 64/101 (63.37%), Postives = 84/101 (83.17%), Query Frame = 1
Query:   37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPY-FPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEHS 336
            PTTG+ RDG+C+T   D G H VC+E+TEEFLEYTK+QGNDLSTPR  + FPGL PGDRWCLC+SRW +A++ G APPV+LES H +A++VISL++L +++
Sbjct:   19 PTTGFYRDGYCNTGGQDFGLHVVCAEMTEEFLEYTKSQGNDLSTPRPMFDFPGLKPGDRWCLCASRWEEARQAGVAPPVILESVHIRAIEVISLDILKQYA 119          
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A166UUZ8_9CYAN (Uncharacterized protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A166UUZ8_9CYAN)

HSP 1 Score: 145 bits (365), Expect = 1.180e-42
Identity = 66/102 (64.71%), Postives = 80/102 (78.43%), Query Frame = 1
Query:   37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPY-FPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEHSS 339
            P TG+ RDGFC+TD  D G H +C+EVT EFL+YTKAQGNDLSTP   + FPGL PGDRWCLC+ RW +A   G APPVVL STH+ AL+V+SL+LL E++S
Sbjct:   19 PRTGFYRDGFCNTDPQDFGSHVICAEVTAEFLDYTKAQGNDLSTPVPAFHFPGLKPGDRWCLCALRWKEALEAGVAPPVVLASTHENALEVVSLDLLQEYAS 120          
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A0P7AZS1_9FLAO (Uncharacterized protein n=1 Tax=Croceitalea dokdonensis DOKDO 023 TaxID=1300341 RepID=A0A0P7AZS1_9FLAO)

HSP 1 Score: 144 bits (364), Expect = 1.480e-42
Identity = 66/100 (66.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:   37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPY-FPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEH 333
            P TG+ RDGFC T   D G H VC+ +TEEFL YTK+QGNDLSTP + Y FPGL PGD+WCLC+SRW QA R GKAP V+LE+TH+KAL++I  ELL+EH
Sbjct:   17 PKTGFYRDGFCKTGPEDVGTHVVCAIMTEEFLVYTKSQGNDLSTPIKMYQFPGLKPGDKWCLCASRWKQAYRAGKAPDVLLEATHEKALEIIDFELLLEH 116          
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A261KXW2_9CYAN (Uncharacterized protein n=3 Tax=Oscillatoriales TaxID=1150 RepID=A0A261KXW2_9CYAN)

HSP 1 Score: 144 bits (363), Expect = 2.100e-42
Identity = 65/101 (64.36%), Postives = 79/101 (78.22%), Query Frame = 1
Query:   37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPY-FPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEHS 336
            P TG+ RDG+C T  +D G H VC+E+T +FLE+TK +GNDLSTPR  Y FPGL PGDRWCLC+SRW +A   G APPVVL +THQKAL+V+ LE+L EHS
Sbjct:   19 PMTGFYRDGYCQTGASDFGSHVVCAELTADFLEFTKRRGNDLSTPRLEYSFPGLKPGDRWCLCASRWKEALDSGVAPPVVLSATHQKALEVVPLEVLQEHS 119          
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A6M0FMV3_9CYAN (DUF2237 domain-containing protein n=18 Tax=Okeania TaxID=1458928 RepID=A0A6M0FMV3_9CYAN)

HSP 1 Score: 144 bits (363), Expect = 2.310e-42
Identity = 65/101 (64.36%), Postives = 78/101 (77.23%), Query Frame = 1
Query:   37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPY-FPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEHS 336
            P TG+ RDGFC T  +D G H +C+ VT EFLE+TK +GNDLSTPR  Y FPGL PGDRWCLC+SRW +A   G APPVVL +THQKAL+V+ LE+L EH+
Sbjct:   19 PMTGFYRDGFCQTGPSDFGSHVICAAVTAEFLEFTKRRGNDLSTPRPEYSFPGLKPGDRWCLCASRWKEALDSGVAPPVVLSATHQKALEVVPLEVLQEHA 119          
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A6T9YYR6_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A6T9YYR6_9RHOD)

HSP 1 Score: 145 bits (366), Expect = 3.580e-42
Identity = 65/98 (66.33%), Postives = 78/98 (79.59%), Query Frame = 1
Query:   37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPYFPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLME 330
            P TGW RDGFC T+  D GQHCVC+ +T+ FL+YTK+QGNDLSTPR   FPGL PGD+WCLC+SRW QA   G AP VVL +TH+KALD+I+LE+L E
Sbjct:   74 PLTGWNRDGFCCTEVADFGQHCVCASLTKSFLDYTKSQGNDLSTPRGS-FPGLKPGDKWCLCTSRWKQAHAAGCAPEVVLSATHEKALDLIALEVLRE 170          
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A8J6QQ26_9CYAN (DUF2237 domain-containing protein n=2 Tax=Synechococcaceae TaxID=1890426 RepID=A0A8J6QQ26_9CYAN)

HSP 1 Score: 142 bits (358), Expect = 1.140e-41
Identity = 66/102 (64.71%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPY-FPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEHSS 339
            P TGW RDGFC TD  D G+H VC  V E FL YT+AQGNDLSTP   Y FPGL PGD WC+C+ RWL+A  DG APPV LE+  Q AL+VI LELL EH+S
Sbjct:   17 PMTGWYRDGFCRTDGADLGRHTVCCVVDERFLSYTRAQGNDLSTPMPQYGFPGLKPGDHWCVCAGRWLEAYEDGMAPPVRLEACEQSALEVIPLELLQEHAS 118          
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A2Z4LTI4_9FLAO (Uncharacterized protein n=1 Tax=Muricauda aurantiaca TaxID=1383885 RepID=A0A2Z4LTI4_9FLAO)

HSP 1 Score: 142 bits (357), Expect = 2.010e-41
Identity = 66/100 (66.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:   37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPY-FPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEH 333
            P TG+ RDGFC T   D G H VC+ +TEEFL YTKAQGNDLS+P   Y FPGL PG++WCLC+SRW QAQ+ GKAP VVLE+TH+KAL +I  ELL+EH
Sbjct:   24 PKTGFYRDGFCRTGPEDVGTHVVCAIMTEEFLIYTKAQGNDLSSPMPMYDFPGLQPGNKWCLCASRWKQAQKAGKAPVVVLEATHEKALQIIDFELLLEH 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXT4_ECTSI2.000e-6281.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIX8_9PHAE3.020e-6179.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2T2RGJ0_9CYAN1.140e-4263.37DUF2237 domain-containing protein n=1 Tax=Cyanobac... [more]
A0A166UUZ8_9CYAN1.180e-4264.71Uncharacterized protein n=2 Tax=Cyanobacteria TaxI... [more]
A0A0P7AZS1_9FLAO1.480e-4266.00Uncharacterized protein n=1 Tax=Croceitalea dokdon... [more]
A0A261KXW2_9CYAN2.100e-4264.36Uncharacterized protein n=3 Tax=Oscillatoriales Ta... [more]
A0A6M0FMV3_9CYAN2.310e-4264.36DUF2237 domain-containing protein n=18 Tax=Okeania... [more]
A0A6T9YYR6_9RHOD3.580e-4266.33Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A8J6QQ26_9CYAN1.140e-4164.71DUF2237 domain-containing protein n=2 Tax=Synechoc... [more]
A0A2Z4LTI4_9FLAO2.010e-4166.00Uncharacterized protein n=1 Tax=Muricauda aurantia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59299contigH-elongata_contig59299:840..2197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.2
Seed ortholog evalue4.1e-48
Seed eggNOG ortholog2880.D7FXT4
EggNOG free text desc.Uncharacterized protein conserved in bacteria (DUF2237)
EggNOG OGs2S415@2759,COG3651@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_001540.1
Exons2
Model size339
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.5204823-CDS-H-elongata_contig59299:839..10511622930961.5204823-CDS-H-elongata_contig59299:839..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59299 840..1051 +
1691679641.617953-CDS-H-elongata_contig59299:839..10511691679641.617953-CDS-H-elongata_contig59299:839..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59299 840..1051 +
1622930961.53887-CDS-H-elongata_contig59299:2070..21971622930961.53887-CDS-H-elongata_contig59299:2070..2197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59299 2071..2197 +
1691679641.6294196-CDS-H-elongata_contig59299:2070..21971691679641.6294196-CDS-H-elongata_contig59299:2070..2197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59299 2071..2197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59299.13441.1prot_H-elongata_contig59299.13441.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59299 840..2197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59299.13441.1

>prot_H-elongata_contig59299.13441.1 ID=prot_H-elongata_contig59299.13441.1|Name=mRNA_H-elongata_contig59299.13441.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MLRDQSCSLPGGPTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQ
GNDLSTPRRPYFPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKAL
DVISLELLMEHSS
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mRNA from alignment at H-elongata_contig59299:840..2197+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59299.13441.1 ID=mRNA_H-elongata_contig59299.13441.1|Name=mRNA_H-elongata_contig59299.13441.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1358bp|location=Sequence derived from alignment at H-elongata_contig59299:840..2197+ (Himanthalia elongata Himel1 dioecious)
ATGCTCCGGGACCAGTCTTGCTCGCTGCCTGGGGGACCTACCACCGGTTG GCGACGAGACGGGTTCTGTAGCACCGATGATAACGACCATGGGCAACACT GCGTCTGTTCCGAGGTGACGGAGGAATTCTTGGAGTACACGAAAGCCCAG GGTAACGACCTGTCCACACCGCGGCGGCCGTACTTCCCAGGCCTCAACCC GGGGGATCGATGGTGAGTGAGTTGAGTCCCTGTCTGTGTTTCGACTCGTA GAAAACTAAACGTTTTCGCGTTTTCTTTCCACTTGAATCACGTTTGTTTG TTTGTTTTTATCCTCTTCCCCACGCACGATAGAAAATACTCTACAGGGTA CAGTCATGATGGTGGTCAGTTGACGAGCCGCCCTCCCCTCTCTACTACTA CACCATGTAGAAGGTGGTCTATAAGGGGATTATATTCTAATATGAGTGTT AGTAGTCGACGACGATGGATTGGCGTTCTCTCCGTCATGAAACGCCTTTT TTTTAGAAAACTAATTGAATGCCGATCGTTTTCGACGAGACAGACGGCAT GCCCGGTGGTTTAGTTGGTAACCTCGAAACCTTCTGACGTTGGGATGCGA GTTCGAATCTCGGCGCAGTCACACGAACTGGGATTGTTTTTTTTCTCAAA TCATGCCCAAACAAGTGAAGAACGATTATTTCGCGGGTACACAAAATTCG ACTTACGGTCGACGAGGGAAAAGAGCTGCTGAATATTTCTCGCGATAAAA ATTAAGGCAAGCACCGCAGAAGGAAGGTGGAAAAAATCTTGTGTGACCTT CCTCCTGTGTGACCCCGGCTGGTGCATGCCTCCATAGTCTGTCGTCAGAA TAAATGGGATGGCGACATAATAGACTAGAGTACACCTAATACCCGAAGCT ATTGCTACGTCTCCGCTTCGAGGCACGGCGCACGCCCAGCCAATCGTCGC TGACCTATAGATCGTTTGCCGCTTCACGAAAACACAAAACACCCAGATGT CTTAAGCTTCGGCGGCCCCGTTTTTCCGCGCCGGAGTTGGCTGCGTTAAT ACCTCACAGAAAAGGTTCCTACCCCACAGTCTTATTTATGCCCAGCCTCT ATTTGGTCTACACGATCGGGGACATAATTCCACCACTTGCAAAACTCGAA GCATGCGAAACCTAATGGGTCGCCCATTTCGAACGTATTACTGCTACTGC TGGTTGTGACTAATTTACTCGCTCTCGCCAGGTGTCTTTGCTCATCGCGG TGGCTGCAGGCTCAACGCGACGGGAAAGCTCCGCCGGTGGTGCTGGAGAG CACCCACCAGAAGGCGCTAGACGTGATTTCCCTCGAGCTTTTGATGGAAC ACAGCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig59299:840..2197+

>mRNA_H-elongata_contig59299.13441.1 ID=mRNA_H-elongata_contig59299.13441.1|Name=mRNA_H-elongata_contig59299.13441.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig59299:840..2197+ (Himanthalia elongata Himel1 dioecious)
ATGCTCCGGGACCAGTCTTGCTCGCTGCCTGGGGGACCTACCACCGGTTG
GCGACGAGACGGGTTCTGTAGCACCGATGATAACGACCATGGGCAACACT
GCGTCTGTTCCGAGGTGACGGAGGAATTCTTGGAGTACACGAAAGCCCAG
GGTAACGACCTGTCCACACCGCGGCGGCCGTACTTCCCAGGCCTCAACCC
GGGGGATCGATGATGCTCCGGGACCAGTCTTGCTCGCTGCCTGGGGGACC
TACCACCGGTTGGCGACGAGACGGGTTCTGTAGCACCGATGATAACGACC
ATGGGCAACACTGCGTCTGTTCCGAGGTGACGGAGGAATTCTTGGAGTAC
ACGAAAGCCCAGGGTAACGACCTGTCCACACCGCGGCGGCCGTACTTCCC
AGGCCTCAACCCGGGGGATCGATGGTGTCTTTGCTCATCGCGGTGGCTGC
AGGCTCAACGCGACGGGAAAGCTCCGCCGGTGGTGCTGGAGAGCACCCAC
CAGAAGGCGCTAGACGTGATTTCCCTCGAGCTTTTGATGGAACACAGCAG
CGTGTCTTTGCTCATCGCGGTGGCTGCAGGCTCAACGCGACGGGAAAGCT
CCGCCGGTGGTGCTGGAGAGCACCCACCAGAAGGCGCTAGACGTGATTTC
CCTCGAGCTTTTGATGGAACACAGCAGC
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