mRNA_H-elongata_contig117163.1344.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A1Y1MJE9_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1MJE9_PHOPY) HSP 1 Score: 94.7 bits (234), Expect = 2.540e-20 Identity = 52/113 (46.02%), Postives = 75/113 (66.37%), Query Frame = 1
Query: 4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQV-KEFMTLPIDVAIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTFE 339
W +R Q A +SSE+EYVALA V+ LF + +E + L I I I+EDN+S I+MA + +RRT+H+DIKH+ + D +E +H++Y+ S EQ ADILTKS+ + FE
Sbjct: 867 WKTRKQCTVALSSSEAEYVALATCVSNCLFFGHICQEILHLNI-FPIVINEDNQSCIRMA-STLETRRTKHIDIKHHYIRDCVESERIHIQYIPSNEQQADILTKSLSLSKFE 977
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 4.600e-20 Identity = 43/112 (38.39%), Postives = 75/112 (66.96%), Query Frame = 1
Query: 4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDVA-IKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
WFSR QK +++E EYVA+A+++ +LFLRQV M L D++ I + EDN+ AI++A N ++ ++H+D++H+ + + +E + + +V S QHAD LTK++ ++F
Sbjct: 252 WFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 363
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 4.070e-19 Identity = 42/112 (37.50%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
WFSR QK +++E+EYVA+A+++ +LFLRQV FM + I + EDN+ AI++A N ++ ++H+D++H+ + + +E + + +V S QHAD LTK+ ++F
Sbjct: 189 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKATSKESF 300
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 5.800e-19 Identity = 42/112 (37.50%), Postives = 74/112 (66.07%), Query Frame = 1
Query: 4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
WFSR QK +++E+EYVA+A+++ +LFLRQV FM + I + EDN+ AI++A N ++ ++H+D++H+ + + +E + + +V S QHAD LTK++ ++F
Sbjct: 1350 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 1461
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 6.410e-19 Identity = 42/112 (37.50%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
WFSR QK +++E+EYVA A+++ +LFLRQV FM + I + EDN+ AI++A N ++ ++H+D++H+ + + +E + + +V S QHAD LTK++ ++F
Sbjct: 291 WFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 402
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5K6X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X8_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 6.780e-19 Identity = 44/108 (40.74%), Postives = 72/108 (66.67%), Query Frame = 1
Query: 1 SWFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSV 321
SWFSR QK +++E+EYVAL ++V +LFLRQ+ FM + + I + EDN+ AI++A+N S+ ++H+D++H+ + + +E + V +V S Q AD LTKS+
Sbjct: 188 SWFSRTQKYVTLSTTETEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 295
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 7.930e-19 Identity = 40/112 (35.71%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
WFSR QK +++E+EYVA+A+++ +LFLRQV FM + I + EDN I++A N ++ ++H+D++H+ + + +E + + +V S QH D LTK++ ++F
Sbjct: 47 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESF 158
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 1.050e-18 Identity = 43/112 (38.39%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
WFSR QK ++ESEYVA+A+++ +LFLRQV FM + I + EDN+ AI++A N ++ ++H+D++H+ + + +E + + +V S QHAD LTK++ ++F
Sbjct: 706 WFSRTQKCVTLYTTESEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 817
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.380e-18 Identity = 42/112 (37.50%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
WFSR QK +++E+EYVA+A+++ +LFLRQV FM + I + EDN+ AI++A N ++ ++H+D +H+++ +E + + +V S QHAD LTK++ ++F
Sbjct: 171 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTKAISKESF 282
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 2.110e-18 Identity = 41/112 (36.61%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
WFSR QK +++E+EYVA+A+++ +LFLRQV FM + I + EDN+ AI++A N ++ ++H+D++H+ + + +E + + V + QHAD LTK++ ++F
Sbjct: 199 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESF 310 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig117163.1344.1 >prot_H-elongata_contig117163.1344.1 ID=prot_H-elongata_contig117163.1344.1|Name=mRNA_H-elongata_contig117163.1344.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp SWFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDVAIKIHback to top mRNA from alignment at H-elongata_contig117163:1719..2057- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig117163.1344.1 ID=mRNA_H-elongata_contig117163.1344.1|Name=mRNA_H-elongata_contig117163.1344.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at H-elongata_contig117163:1719..2057- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig117163:1719..2057- >mRNA_H-elongata_contig117163.1344.1 ID=mRNA_H-elongata_contig117163.1344.1|Name=mRNA_H-elongata_contig117163.1344.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig117163:1719..2057- (Himanthalia elongata Himel1 dioecious)back to top |