mRNA_H-elongata_contig59289.13440.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59289.13440.1
Unique NamemRNA_H-elongata_contig59289.13440.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59289.13440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59289contigH-elongata_contig59289:86..1027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size449
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59289.13440.1prot_H-elongata_contig59289.13440.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59289 86..1027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.4065857-CDS-H-elongata_contig59289:85..2611622930961.4065857-CDS-H-elongata_contig59289:85..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59289 86..261 +
1691679641.569949-CDS-H-elongata_contig59289:85..2611691679641.569949-CDS-H-elongata_contig59289:85..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59289 86..261 +
1622930961.4266992-CDS-H-elongata_contig59289:442..4751622930961.4266992-CDS-H-elongata_contig59289:442..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59289 443..475 +
1691679641.5873237-CDS-H-elongata_contig59289:442..4751691679641.5873237-CDS-H-elongata_contig59289:442..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59289 443..475 +
1622930961.4451036-CDS-H-elongata_contig59289:718..7931622930961.4451036-CDS-H-elongata_contig59289:718..793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59289 719..793 +
1691679641.6006224-CDS-H-elongata_contig59289:718..7931691679641.6006224-CDS-H-elongata_contig59289:718..793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59289 719..793 +
1622930961.4656684-CDS-H-elongata_contig59289:864..10271622930961.4656684-CDS-H-elongata_contig59289:864..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59289 865..1027 +
1691679641.6091633-CDS-H-elongata_contig59289:864..10271691679641.6091633-CDS-H-elongata_contig59289:864..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59289 865..1027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59289.13440.1

>prot_H-elongata_contig59289.13440.1 ID=prot_H-elongata_contig59289.13440.1|Name=mRNA_H-elongata_contig59289.13440.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
TEPGSGARSGTPTRGSMATSGRGGLAAGVDVTDMTHKLKPPQPREAGSES
LAATNVVRRSRRYSAASTNGQGQERSYTTTVGGFLMLAQHMHLKDCLQRV
RGELREVSDWWHLHHEYGIGRVVVGKYVQPLAFDTRAVGYSVGVEVLLR
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mRNA from alignment at H-elongata_contig59289:86..1027+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59289.13440.1 ID=mRNA_H-elongata_contig59289.13440.1|Name=mRNA_H-elongata_contig59289.13440.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=942bp|location=Sequence derived from alignment at H-elongata_contig59289:86..1027+ (Himanthalia elongata Himel1 dioecious)
ACAGAGCCGGGATCGGGTGCGCGCAGCGGTACACCGACGCGCGGATCGAT
GGCGACGTCCGGCCGCGGGGGGCTCGCAGCCGGAGTGGATGTTACCGATA
TGACGCACAAACTAAAGCCACCGCAGCCGCGAGAGGCGGGGTCGGAAAGC
CTTGCAGCGACAAACGTTGTTCGAAGGCAAGTAGTATAGAAAAATACACA
TGATGATGTATATGTGGTATATAGTATTGTATGCAAAGGGAAAATATTAT
ATTTGATAGTCGTCGGCGTATTCCGTTAATACAGGCATTTTAACTCGAAA
TATGTGCTCAAAGATGCACGCCCTCTCGCATGCCCACACGCCACCCTCGG
TCCTCAGGAGTCGCCGTTATTCAGCGGCGTCTACTAACGGGTGAGTCCGA
GGTTTGACTGCAGCATAGCGTCCGCTTAGATGTTTTTGTGTCATAGGCCT
AGTTCGTCCGTATCCCCTTCTACGACACAGGAAATGTGGGAATGCAAACC
CTTCGTCGGCGTAAGTAGGGTAGGGCGATTACTAGGCCAATAACGGTCCA
GACTACGCCCCGTAATGCAGAGTGCATGAGTAGTAGTTCGTACGGTTGTC
GTTAACCTCACCCCCGCAACTATCGACAAGCAGGCAAGGTCAGGAAAGGA
GTTACACAACGACGGTTGGTGGTTTCCTTATGTTAGCGCAACACATGCAT
CTCAAAGACACGGGATGTCGAGGCCCCCTTCAGAGCAATGGAGTTGAGCA
CGAACGGGCGGACGCTATCGGCTTCTGTGTTGTTTGCAAAGGGTGCGGGG
CGAACTTCGGGAAGTGTCCGATTGGTGGCACTTGCACCATGAGTACGGCA
TTGGGCGTGTTGTTGTCGGGAAGTACGTTCAACCACTGGCTTTCGATACA
CGAGCTGTCGGATACTCTGTCGGCGTCGAAGTCCTCCTTAGG
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Coding sequence (CDS) from alignment at H-elongata_contig59289:86..1027+

>mRNA_H-elongata_contig59289.13440.1 ID=mRNA_H-elongata_contig59289.13440.1|Name=mRNA_H-elongata_contig59289.13440.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig59289:86..1027+ (Himanthalia elongata Himel1 dioecious)
ACAGAGCCGGGATCGGGTGCGCGCAGCGGTACACCGACGCGCGGATCGAT
GGCGACGTCCGGCCGCGGGGGGCTCGCAGCCGGAGTGGATGTTACCGATA
TGACGCACAAACTAAAGCCACCGCAGCCGCGAGAGGCGGGGTCGGAAAGC
CTTGCAGCGACAAACGTTGTTCGAAGACAGAGCCGGGATCGGGTGCGCGC
AGCGGTACACCGACGCGCGGATCGATGGCGACGTCCGGCCGCGGGGGGCT
CGCAGCCGGAGTGGATGTTACCGATATGACGCACAAACTAAAGCCACCGC
AGCCGCGAGAGGCGGGGTCGGAAAGCCTTGCAGCGACAAACGTTGTTCGA
AGGAGTCGCCGTTATTCAGCGGCGTCTACTAACGGGAGTCGCCGTTATTC
AGCGGCGTCTACTAACGGGCAAGGTCAGGAAAGGAGTTACACAACGACGG
TTGGTGGTTTCCTTATGTTAGCGCAACACATGCATCTCAAAGAGCAAGGT
CAGGAAAGGAGTTACACAACGACGGTTGGTGGTTTCCTTATGTTAGCGCA
ACACATGCATCTCAAAGATTGTTTGCAAAGGGTGCGGGGCGAACTTCGGG
AAGTGTCCGATTGGTGGCACTTGCACCATGAGTACGGCATTGGGCGTGTT
GTTGTCGGGAAGTACGTTCAACCACTGGCTTTCGATACACGAGCTGTCGG
ATACTCTGTCGGCGTCGAAGTCCTCCTTAGGTTGTTTGCAAAGGGTGCGG
GGCGAACTTCGGGAAGTGTCCGATTGGTGGCACTTGCACCATGAGTACGG
CATTGGGCGTGTTGTTGTCGGGAAGTACGTTCAACCACTGGCTTTCGATA
CACGAGCTGTCGGATACTCTGTCGGCGTCGAAGTCCTCCTTAGG
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