prot_H-elongata_contig5927.13438.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5927.13438.1
Unique Nameprot_H-elongata_contig5927.13438.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length81
Homology
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 3.520e-23
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 0
Query:    3 VPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEI 78
            +P+Y DNT+ LH   NR+++ R KHIALR+ F++ELV E KISIHYV TED LAD+GTKH +KHR ++L  LIN +
Sbjct:  581 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNL 656          
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 6.790e-23
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 0
Query:    3 VPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEI 78
            +P+Y DNT+ LH   NR+++ R KHIALR+ F++ELV E KISIHYV TED LAD+GTKH +KHR ++L  LIN  
Sbjct: 1589 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664          
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.250e-22
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 0
Query:    3 VPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEI 78
            +P+Y DNT+ LH   NR+++ R KHIALR+ F++ELV E KISIHYV+TED LAD+GTKH + HR ++L  LIN  
Sbjct:  920 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995          
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.740e-22
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 0
Query:    3 VPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEI 78
            +P+Y DNT+ LH   NR+++ R KHIALR+ F++ELV E KISIHY  TED LAD+GTKH +KHR  +L  LIN  
Sbjct:  360 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435          
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.830e-20
Identity = 39/74 (52.70%), Postives = 58/74 (78.38%), Query Frame = 0
Query:    3 VPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLIN 76
            VPLY DNT+ LH   NR+++ R KHIALR+ +++EL+ E +ISIHY+ T+  +AD+GTKHL+KHR ++L  +I+
Sbjct: 1090 VPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNKHRLKHLLDIIS 1163          
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.180e-19
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 0
Query:    2 SVPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEIK 79
            S PLYI NT+ LHV  N+T++ R KH+ALR+ +++E+V+E +ISIHY+ TED LAD+GTKHL+K RH+ L   I++IK
Sbjct:  613 SAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCL---IDKIK 686          
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.950e-18
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 0
Query:    3 VPLYIDNTSALHVASNRT-YNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEI 78
            VPLY DNT+ LH   NR+ ++ R KHIALR+ +++ELV E +ISIHY+ T+   AD+GTKHL+KHR ++L  +I+  
Sbjct:  901 VPLYCDNTATLHALGNRSSFSSRTKHIALRFFYIRELVSEGRISIHYIPTDSNPADIGTKHLNKHRLKHLLDIISSF 977          
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.820e-18
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 0
Query:   10 TSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKH-LSKHRHRNLTKLINEI 78
            T+ LH   NR+++ R KHIALR+ F++ELV E KISIHYV TED LAD+GTKH ++KHR ++L  L+N  
Sbjct:  189 TATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFINKHRFKHLMDLVNNF 258          
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 4.920e-18
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 0
Query:    3 VPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEI 78
            VPLY DNT+ LH   NR+++ R KHIALR+ F+++LV E KI IH+V T+   AD+GTKHL+K R ++L  +I   
Sbjct:  278 VPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLLNMIKNF 353          
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.980e-18
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 0
Query:    3 VPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEI 78
            VPLY DNT+ LH   NR+++ R  HIALR+ +++ELV E +ISIHYV T+  LAD+GTK+L+KH  ++L  +I+  
Sbjct: 1118 VPLYCDNTATLHALGNRSFSSRENHIALRFFYIRELVLEGRISIHYVPTDSNLADIGTKYLNKHWLKHLLDIISSF 1193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JME8_9PHAE3.520e-2359.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE6.790e-2359.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE1.250e-2257.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5U2_9PHAE3.740e-2257.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K129_9PHAE1.830e-2052.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE1.180e-1956.41CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KC00_9PHAE1.950e-1851.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCX7_9PHAE2.820e-1857.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9N2_9PHAE4.920e-1851.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE4.980e-1851.32Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5927contigH-elongata_contig5927:9384..9626 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5927.13438.1mRNA_H-elongata_contig5927.13438.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5927 9384..9626 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5927.13438.1 ID=prot_H-elongata_contig5927.13438.1|Name=mRNA_H-elongata_contig5927.13438.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
GSVPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVK
TEDQLADLGTKHLSKHRHRNLTKLINEIKA*
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