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Homology
BLAST of mRNA_H-elongata_contig592.13433.1 vs. uniprot
Match: D7G904_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G904_ECTSI) HSP 1 Score: 231 bits (590), Expect = 1.640e-67 Identity = 160/297 (53.87%), Postives = 189/297 (63.64%), Query Frame = 3
Query: 117 MRSSPSAGGMRMAGNYAQRGSPGVVRRAASRPISIIRSTSVPTQLQDRSQQQAVPSAGGSSSGSIGGDTTTSRRVLHLRDRSLQNDININGGIGINRPSATGAGRGFIGVAQSLPIPQAPMLAGSLPPSRFLDDLPPLTLGPQADVESFRRVYGAVSASQRENHLYASSCPATLGGCLDRPPGSGMK-MSVLEEGSYNEEDGDTAL--SRESKSATALSILELLSKGAVTEPEPAAKLEAVEGPPEDEKTAEDDDTEAVETSEESDGE----QEDLFKLEGLEGVNEEMNALSLSRV 986
M SSPSAGGMR+AGNYA RGSPGVVRR ASRPISIIRSTSVP QLQDR+Q GGS G +RR LH RDRSLQ+D N +GA G G+ QSLP PQAP+LAGSLPPSRFLDDLPPL+LGPQAD SF GA+S S + N LYA+SCPA +G RPPGS ++ MSVL EGS +EE+ + A + SK TALSILE LS+ PAA ++ D E+VE+ E ++D+F+L+GLEGVNEE+ ALSLS
Sbjct: 1 MLSSPSAGGMRLAGNYAHRGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAGDPDPEGGS------GGNPANRRGLHTRDRSLQHDFN------------SGAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQAD-NSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGSRLQSMSVLAEGSLDEEEEEAAEEGAEASKRITALSILESLSQT------PAAPVDGSRV-----------DAESVESLTNIVDERLPIEDDVFELDGLEGVNEELEALSLSEA 261
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-15_002420.1 |
| Exons | 5 |
| Model size | 2042 |
| Cds size | 951 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930960.795097-UTR-H-elongata_contig592:14474..14527 | 1622930960.795097-UTR-H-elongata_contig592:14474..14527 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig592 14475..14527 + |
| 1691679641.3469634-UTR-H-elongata_contig592:14474..14527 | 1691679641.3469634-UTR-H-elongata_contig592:14474..14527 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig592 14475..14527 + |
| 1622930960.9171498-UTR-H-elongata_contig592:18654..19692 | 1622930960.9171498-UTR-H-elongata_contig592:18654..19692 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig592 18655..19692 + |
| 1691679641.4197059-UTR-H-elongata_contig592:18654..19692 | 1691679641.4197059-UTR-H-elongata_contig592:18654..19692 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig592 18655..19692 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930960.8127651-CDS-H-elongata_contig592:14527..14657 | 1622930960.8127651-CDS-H-elongata_contig592:14527..14657 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig592 14528..14657 + |
| 1691679641.3556514-CDS-H-elongata_contig592:14527..14657 | 1691679641.3556514-CDS-H-elongata_contig592:14527..14657 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig592 14528..14657 + |
| 1622930960.8261578-CDS-H-elongata_contig592:16639..17001 | 1622930960.8261578-CDS-H-elongata_contig592:16639..17001 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig592 16640..17001 + |
| 1691679641.3642972-CDS-H-elongata_contig592:16639..17001 | 1691679641.3642972-CDS-H-elongata_contig592:16639..17001 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig592 16640..17001 + |
| 1622930960.842288-CDS-H-elongata_contig592:17526..17592 | 1622930960.842288-CDS-H-elongata_contig592:17526..17592 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig592 17527..17592 + |
| 1691679641.378118-CDS-H-elongata_contig592:17526..17592 | 1691679641.378118-CDS-H-elongata_contig592:17526..17592 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig592 17527..17592 + |
| 1622930960.860524-CDS-H-elongata_contig592:18036..18372 | 1622930960.860524-CDS-H-elongata_contig592:18036..18372 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig592 18037..18372 + |
| 1691679641.3925846-CDS-H-elongata_contig592:18036..18372 | 1691679641.3925846-CDS-H-elongata_contig592:18036..18372 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig592 18037..18372 + |
| 1622930960.9050353-CDS-H-elongata_contig592:18597..18654 | 1622930960.9050353-CDS-H-elongata_contig592:18597..18654 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig592 18598..18654 + |
| 1691679641.4048457-CDS-H-elongata_contig592:18597..18654 | 1691679641.4048457-CDS-H-elongata_contig592:18597..18654 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig592 18598..18654 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig592.13433.1 >prot_H-elongata_contig592.13433.1 ID=prot_H-elongata_contig592.13433.1|Name=mRNA_H-elongata_contig592.13433.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=317bp
MANTSDASGASGSDESSQISAMRSSPSAGGMRMAGNYAQRGSPGVVRRAA SRPISIIRSTSVPTQLQDRSQQQAVPSAGGSSSGSIGGDTTTSRRVLHLR DRSLQNDININGGIGINRPSATGAGRGFIGVAQSLPIPQAPMLAGSLPPS RFLDDLPPLTLGPQADVESFRRVYGAVSASQRENHLYASSCPATLGGCLD RPPGSGMKMSVLEEGSYNEEDGDTALSRESKSATALSILELLSKGAVTEP EPAAKLEAVEGPPEDEKTAEDDDTEAVETSEESDGEQEDLFKLEGLEGVN EEMNALSLSRVDRQQG* back to topmRNA from alignment at H-elongata_contig592:14475..19692+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig592.13433.1 ID=mRNA_H-elongata_contig592.13433.1|Name=mRNA_H-elongata_contig592.13433.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5218bp|location=Sequence derived from alignment at H-elongata_contig592:14475..19692+ (Himanthalia elongata Himel1 dioecious) GTTTAGGTCCCTCTGGAAACGACGCACCCGGCGAACGAGCAGTAGTCTAG
TACATGGCCAACACCTCCGACGCCTCTGGGGCATCTGGCAGCGACGAATC
ATCTCAAATTTCAGCGATGCGTTCCAGCCCTTCTGCTGGGGGCATGAGAA
TGGCCGGTAATTACGCTCAGCGTGGGTCACCCGGTGAGATAGTTTTTGTG
TGAAGTCCTCAGGATGCTGCACTATTTAATAGTCCAATCATCTGACGATT
AGTCATGAAACACCACGGATATCAAAAGCTTGTGTTCTTTCAATTCCAAA
AACACTCTTCGAAAATGATTGCGACAAATTATTTAAACGGTCATATTCAG
TTGTAATCTTACTATTCTATTGTTTTAGGGCTGTATCTCGTACAACCGTA
ATAATTGTATCACTGTTATATTGCATTGGCGTCGCCCGTCGATGGTAACT
TTGCAACTTTCCGTGTTTTGCCGTTCATTGCATATCGCACTGTTTCTTAT
CTGGGTCCTAGTTTTGACTTGAACTACGCTGATATGTCAAAAAAACAAAA
CAAAAAAACTGTGAATAGCGCGATCTCCCCCTCCACTAATGAAGCACATC
GGAGGAAATGGCCAACGGAGTATGCTATTCTATAACGATACTATTAAATA
ACAATACTACTGTTAACGAGCTTCAACTATCATTTTCGAACAGAAGATAA
AATTGTGTACCTATTAATACTACCCACTCCCTAACTGTCCTGTACCCTAT
AATCTCGCGTGTGTGGCTTGACTATTTAATATCTCTATCTCCTTCCATTC
CCTAATTTAAAATTATTGATCGGATCTTGAATCACGAACTATTCTAGTGC
CTATAAATGATGTACGATTAAATCTTGAACTACTAGTTTACCTGTAGTGA
ACTATTTTGTTGTGAAGATTTTGTGCGCATAGGAAGGAATGTACACACTC
GAACCTGACGATAGTGGTACCCTTGTAATGAAGGTGTGGATGCTCGGACG
GTTTGAGTTTAAATATTTTTGTAGAAAAAGGTGAAACCTTCGGCAGGCAT
GACATGCTTGTAATATCTAATATCGCCTCCGATATTATCTGGGACTGCAT
CGCACATGCCCACTCTACCAATAAAAGTGGGTTTGGGAAAAAAGAGGCGT
ACATAATCGGTCCACAGGTTTTTAACTGAATAGGCTGCGCAAGTTACTCA
AGCTACCTTGAGGACTGCTGGCTCAGTCCCGGCGGACTGTCGGTGGTAAA
TGCCACGGTACGTAATTGCGTGACCTGATGAAATTGGGATTGGCCCGATC
ACCGTTGACTGTAGAAATGGCGCCGTCACGAAAAAAGGAGAGGATCCCCC
GGGAGTACACACCAGATTCAGCATGGGTTAAGAGAATGAACAGGCCGACG
CAGGACGGGACTGCCGAACCCATCTCGCGAGACCAAATTCTCAGGCGCAA
ACGGGGGAAAGGAAAATTATTTCTCTTTTTTCAGCCGACCACAAGGAGAC
AACCATATCCGGTTTATCTTTACTATACTATACTGCTTTAATAATACTGT
ACTGGTGTATGTGATGCCCTCACCTTCACATTCACATATTGGCTCTATAT
TCCTAATCCATCTTGTGGGCCGGTTTGCGCAGTCTAATGTAAAATGATAA
AAATGGAAAACATAAAAGGAAAAATTAACAAAATTAACAGAAAAACAAGC
ACACAAATCTTAACATGTGCCCACAAAGATGTAGTTAGAGGGATAAATTA
CTAATAACGGAATAAGAACCGACGGAGCGCGCCCAATTAAAATAGACCAG
ACAGACAGTTACTCTATTACTAGGTATCTTAACTGCGAACAAACGAACAA
CCGAACAACCGTCAGCATCGTATGTTGATGCTAGAGTCTACTGTTCACTA
CTGCTGTCCGATAACGATTAAAAGGCTGACGTCAGGTGGTTTGATACAAA
CGTCTAAAATGGAGTGGGTCCCTGAGTCGCCGTAATCGTGATTAAGTCAA
CAATACCAAGTTATTACAAGAGCACTTCGTCATTCGGTCCAACTGCAACC
TCTAGTGTAACAATAGTAGCGTTCTCAGGCACTTTATCCCCCTTCTCTCC
TGGAGGACTACATCGTCACCATATCTTTCCACCGGTGATGTGCCCTTTAT
ACCGCCTCTTTGCAGGAGTGGTTCGACGCGCGGCAAGCCGACCCATCTCG
ATAATCCGCTCCACGTCAGTTCCCACGCAGCTGCAAGATAGGTCACAGCA
GCAGGCTGTGCCGAGTGCTGGCGGCAGTAGCAGCGGCAGTATCGGAGGAG
ACACTACCACTAGCAGAAGAGTTCTGCATCTTCGTGACCGGAGCTTGCAA
AACGATATCAACATCAATGGTGGGATCGGTATCAATAGACCTAGCGCTAC
TGGGGCAGGAAGGGGATTCATTGGCGTTGCGCAGTCGCTCCCGATCCCCC
AAGCGCCGATGCTCGCCGGGTCTCTTCCACCTTCGCGGTTCTTGGATGAC
CTGCCACCCCTCACCCTCGGACCCCAGGTGCGTGGAGTTCGGTGGGGGGG
GGGGGGGGTAGCGGTGACCGCCTTGCCCTATCTGAATGAATTTTGTTTTG
ATTTAGGCCTTTCAAGTCGCCTCGATCTTTCAAGGTGCAAGTAGTAAGTG
AGTGTACTTTACTATTAGTATTAGTATTAGTATTAATGGAGGATTAACGA
GCAACTGATGTGATACTGATATTGGTGAAACGTTTTTGGTGAGCTGCACG
TGTCTTACTTCGTGTTGTTTTTTTTATGACACAAGCGTTTTGCACATTGG
GGGTAGAGAGTCACACGGTGCTACCCTGGATCGTGTTTGAAACGCGTTGA
ATGGGGCGATATTCCAATTTGATATGAAAAATACTAACAATGCTTTCAGT
GACGATAAAATCAAATAAGCCGCCCATCGACACCAGGTCATCTAACACCA
ACAAACAGGTAACGTTTAAATCGCTGTGGTTACCTGCTAAGCGCTTCCTC
CTGGGGTCGTACCCAACGTTACCCCTTTCTCATTTTGCCACTACCCCTTT
AGGCAGACGTCGAATCATTCAGGCGTGTTTACGGAGCGGTCTCGGCATCT
CAAAGGGAGAACCACCTGGTAAGATTGAAATTAACCAAGCGGCGTTTAGG
CGCTTAACGGTTTATGGGGATTTAGCTTCTTAAATCTATATGGTACCTCG
CCTAAACGATTTGTCTGCGACCTTCGTTGAATTTGTTTGTTTGCACGGCA
CAATGATGCCGTTTATTTTATCTCTTGATGTACCAGGTATTCAGTTGCAG
TATTAGTAATCTCGATGTCATGGCACCAGGTATGCTTGCAACGGAGACAA
CCGCCCGAGGAGCTTTCGCTTTCGTCCATCGAACGAACTGCATTCTCAAG
TTAATGTCGACGTGTCCTTACAGTACCAACTTTTACTCGAGTCCGAATAA
CAGGACTAGTGGTGTGCTCGGCTCATCTCGCTGCATGTTGTCTTTCCTTC
CCTTCCCTTCCCTTCCCCGTGCTTGGGTTGATAATTGCTTTGTTATCGCA
ATCGATGTACAGTACGCTTCTTCTTGTCCAGCTACCCTTGGGGGCTGTCT
CGATCGCCCCCCAGGGTCGGGTATGAAGATGTCCGTGTTGGAGGAGGGAT
CTTACAACGAGGAAGACGGGGATACAGCTCTTTCGCGTGAATCGAAGAGT
GCGACAGCTCTTTCCATCCTAGAGTTGCTGTCGAAGGGTGCAGTCACAGA
GCCTGAGCCAGCGGCAAAGCTAGAGGCAGTAGAAGGACCACCGGAAGACG
AAAAGACAGCTGAAGACGATGACACAGAAGCTGTAGAAACGTCTGAGGAA
AGCGACGGAGAGCAAGAGGATCTCTTCAAGTTGGAAGGGCTCGAAGGGGT
GAGCATCTTAGCCAAGATATATCGCCATGTCATGGATATGAGTGCTCATC
ATGGGGAGGGTTTCGTTAGGCTCGCGTCTTGTGCCGCGGACTACCGTAGA
GCTAATGATTCAGCGCTTTATGTAGTATGTCCGAGCCCCCCTTTATCGAA
TAGCAAATTAATGAGACTAAAAACTTGTTTTAACATCCATCCCCTACGCC
CTCTACATCCCCTACATCTGCAGGTGAACGAGGAGATGAATGCCCTCTCC
CTCTCTAGAGTGGATAGGCAGCAAGGTTGATTCGATCGAGTAAACTCCAA
TCTAATGTCATGTGTTCCGAGAGGAAGGGTTTCGAAACCTTAATAAGTTT
TTGCCGCGTTTCCACAGAGCAGAGTATGGAGCTCTTTAGTGGAGCAATTT
GTATTTATTGCGCCCTCGAGCGCCCAGGTGCAAGCTCGAGACATCCTGCT
ATTGCCTGGACAGGGTGAACGTTAGTGGTACTTTAATGCTTAACCCACTC
TATAATCTGCGAGTGTTCTGATATTGCTGATGTGTGCGTAACATTAAGAA
GGTGTGATGGCAAATGAATATGACAAAAAAAAAGTAGGAGGTTAGCTGGC
TGCAGGTTGAAAAGGTTGCCCAGATCCAGTCGACGGCAGTGTGCGGTGGC
TCGTGTGGCGGTTTAGTATTCATATTATTCATAGAAAACACGTACGGTTT
GGCGGTTGAATAGGGTGCACCCGAAATAGAGAGTCGCAGCCACTCACGAG
GTCCCTTCCTGTCATGATTGTAGCAATCCCGATTAGCGATTATTTAGCAT
CGGATCTTTTTTGTTGGGCTTAATACACTATATACTTTATGAATACTCCC
ATATTACTCGGGTGGTGGCAGTAGCATAACGGCGCGGCGCTGTTGCTTTT
GGATGCGTTTAGTTCACCCTCAAGGTTAAGGCCAATATTGATAGCAACCA
ATACCGGTGTTATTTTTGCCTTTAGCTGCGGTTGTCATAGTCGGTCATGG
GTCATGGTAGTCGGTCATCGGTCATCAACACCACAAAATATGTCTAAATA
TTTACAGTACCTGGTAGATAACATTCGGTATAATATATTATACCGAATCA
TATCATATTGTACCGTCTCAAACGGTACGAGGGGCAGTCAGTCCCCTTCA
TGCCCCTTAGTGTTTTACTTGGGGTGGTTCAACGACGCGCGTGTTCTCCT
TGGCTCGACCGACCGCAGCATCAATCGCTAAATTGCTAAAAAAAAAACAG
CTCCCGGTCTAATTTCGAACGAATGGGACTGTCGTCGAAACCTTGTCAAC
ACTGCATCCGCCACTCAA back to topCoding sequence (CDS) from alignment at H-elongata_contig592:14475..19692+ >mRNA_H-elongata_contig592.13433.1 ID=mRNA_H-elongata_contig592.13433.1|Name=mRNA_H-elongata_contig592.13433.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1902bp|location=Sequence derived from alignment at H-elongata_contig592:14475..19692+ (Himanthalia elongata Himel1 dioecious) ATGGCCAACACCTCCGACGCCTCTGGGGCATCTGGCAGCGACGAATCATC TCAAATTTCAGCGATGCGTTCCAGCCCTTCTGCTGGGGGCATGAGAATGG CCGGTAATTACGCTCAGCGTGGGTCACCCGATGGCCAACACCTCCGACGC CTCTGGGGCATCTGGCAGCGACGAATCATCTCAAATTTCAGCGATGCGTT CCAGCCCTTCTGCTGGGGGCATGAGAATGGCCGGTAATTACGCTCAGCGT GGGTCACCCGGAGTGGTTCGACGCGCGGCAAGCCGACCCATCTCGATAAT CCGCTCCACGTCAGTTCCCACGCAGCTGCAAGATAGGTCACAGCAGCAGG CTGTGCCGAGTGCTGGCGGCAGTAGCAGCGGCAGTATCGGAGGAGACACT ACCACTAGCAGAAGAGTTCTGCATCTTCGTGACCGGAGCTTGCAAAACGA TATCAACATCAATGGTGGGATCGGTATCAATAGACCTAGCGCTACTGGGG CAGGAAGGGGATTCATTGGCGTTGCGCAGTCGCTCCCGATCCCCCAAGCG CCGATGCTCGCCGGGTCTCTTCCACCTTCGCGGTTCTTGGATGACCTGCC ACCCCTCACCCTCGGACCCCAGGAGTGGTTCGACGCGCGGCAAGCCGACC CATCTCGATAATCCGCTCCACGTCAGTTCCCACGCAGCTGCAAGATAGGT CACAGCAGCAGGCTGTGCCGAGTGCTGGCGGCAGTAGCAGCGGCAGTATC GGAGGAGACACTACCACTAGCAGAAGAGTTCTGCATCTTCGTGACCGGAG CTTGCAAAACGATATCAACATCAATGGTGGGATCGGTATCAATAGACCTA GCGCTACTGGGGCAGGAAGGGGATTCATTGGCGTTGCGCAGTCGCTCCCG ATCCCCCAAGCGCCGATGCTCGCCGGGTCTCTTCCACCTTCGCGGTTCTT GGATGACCTGCCACCCCTCACCCTCGGACCCCAGGCAGACGTCGAATCAT TCAGGCGTGTTTACGGAGCGGTCTCGGCATCTCAAAGGGAGAACCACCTG GCAGACGTCGAATCATTCAGGCGTGTTTACGGAGCGGTCTCGGCATCTCA AAGGGAGAACCACCTGTACGCTTCTTCTTGTCCAGCTACCCTTGGGGGCT GTCTCGATCGCCCCCCAGGGTCGGGTATGAAGATGTCCGTGTTGGAGGAG GGATCTTACAACGAGGAAGACGGGGATACAGCTCTTTCGCGTGAATCGAA GAGTGCGACAGCTCTTTCCATCCTAGAGTTGCTGTCGAAGGGTGCAGTCA CAGAGCCTGAGCCAGCGGCAAAGCTAGAGGCAGTAGAAGGACCACCGGAA GACGAAAAGACAGCTGAAGACGATGACACAGAAGCTGTAGAAACGTCTGA GGAAAGCGACGGAGAGCAAGAGGATCTCTTCAAGTTGGAAGGGCTCGAAG GGTACGCTTCTTCTTGTCCAGCTACCCTTGGGGGCTGTCTCGATCGCCCC CCAGGGTCGGGTATGAAGATGTCCGTGTTGGAGGAGGGATCTTACAACGA GGAAGACGGGGATACAGCTCTTTCGCGTGAATCGAAGAGTGCGACAGCTC TTTCCATCCTAGAGTTGCTGTCGAAGGGTGCAGTCACAGAGCCTGAGCCA GCGGCAAAGCTAGAGGCAGTAGAAGGACCACCGGAAGACGAAAAGACAGC TGAAGACGATGACACAGAAGCTGTAGAAACGTCTGAGGAAAGCGACGGAG AGCAAGAGGATCTCTTCAAGTTGGAAGGGCTCGAAGGGGTGAACGAGGAG ATGAATGCCCTCTCCCTCTCTAGAGTGGATAGGCAGCAAGGTTGAGTGAA CGAGGAGATGAATGCCCTCTCCCTCTCTAGAGTGGATAGGCAGCAAGGTT GA back to top
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