mRNA_H-elongata_contig117162.1343.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117162.1343.1
Unique NamemRNA_H-elongata_contig117162.1343.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig117162.1343.1 vs. uniprot
Match: A0A2G8KUM7_STIJA (Putative zinc finger BED domain-containing protein 4-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KUM7_STIJA)

HSP 1 Score: 64.3 bits (155), Expect = 4.680e-11
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   16 GSNPLRWWAANKHKYSLIGSVARSVLAIPAISDPSERLFSQCGMFFCDKRNRLAPERLEHLM 201
            G NPL WW  N H++  +G +A   L  P  + PSERLFS+ G  + +KRNRL PE+ E ++
Sbjct:  116 GCNPLDWWKLNYHRFPRLGKLALKYLCAPPSTVPSERLFSEAGGLYDEKRNRLRPEKAEMVL 177          
BLAST of mRNA_H-elongata_contig117162.1343.1 vs. uniprot
Match: UPI000C13F7AD (zinc finger BED domain-containing protein 4-like n=3 Tax=Spodoptera litura TaxID=69820 RepID=UPI000C13F7AD)

HSP 1 Score: 61.6 bits (148), Expect = 1.760e-9
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   22 NPLRWWAANKHKYSLIGSVARSVLAIPAISDPSERLFSQCGMFFCDKRNRLAPERLEHLM 201
            +P  WWA +K KY+ + ++AR  L+ P  S  SERLFS+ G  + +KRNRL PER E L+
Sbjct:  530 SPFDWWAKHKSKYAHLANLARVFLSAPGSSVYSERLFSEAGNLYEEKRNRLLPERAESLV 589          
BLAST of mRNA_H-elongata_contig117162.1343.1 vs. uniprot
Match: A0A4C1SU53_EUMVA (Zinc finger BED domain-containing protein 4 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SU53_EUMVA)

HSP 1 Score: 60.1 bits (144), Expect = 1.860e-9
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   22 NPLRWWA--ANKHKYSLIGSVARSVLAIPAISDPSERLFSQCGMFFCDKRNRLAPERLEHLM 201
            NP  WWA   NK+ + ++  +A+  L  PA S  SERLFS+ G+ +  KRNRLAPER E ++
Sbjct:  113 NPYEWWALSTNKNGFPILSKLAKRYLITPASSVYSERLFSEAGLLYEKKRNRLAPERAEKIV 174          
BLAST of mRNA_H-elongata_contig117162.1343.1 vs. uniprot
Match: A0A4C1WFL1_EUMVA (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1WFL1_EUMVA)

HSP 1 Score: 60.1 bits (144), Expect = 2.310e-9
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   22 NPLRWWA--ANKHKYSLIGSVARSVLAIPAISDPSERLFSQCGMFFCDKRNRLAPERLEHLM 201
            NP  WWA   NK+ + ++  +A+  L  PA S  SERLFS+ G+ +  KRNRLAPER E ++
Sbjct:  128 NPYEWWALSTNKNGFPILSKLAKRYLITPASSVYSERLFSEAGLLYEKKRNRLAPERAEKIV 189          
BLAST of mRNA_H-elongata_contig117162.1343.1 vs. uniprot
Match: UPI001E1E09A0 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E09A0)

HSP 1 Score: 60.8 bits (146), Expect = 3.280e-9
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    7 IYAGSNPLRWWAANKHKYSLIGSVARSVLAIPAISDPSERLFSQCGMFFCDKRNRLAPERLEHLM 201
            + +G++PL WW  N+ K+  I  VA+ V+A+PA S PSER+FS  G+     RNRL+ E ++ ++
Sbjct:  497 MVSGTDPLLWWRDNEEKFPKIAIVAKRVIAVPATSVPSERIFSATGLLINKLRNRLSSEIVDSII 561          
BLAST of mRNA_H-elongata_contig117162.1343.1 vs. uniprot
Match: A0A4C1SQH3_EUMVA (Zinc finger BED domain-containing protein 4 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SQH3_EUMVA)

HSP 1 Score: 58.9 bits (141), Expect = 5.560e-9
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   22 NPLRWWA--ANKHKYSLIGSVARSVLAIPAISDPSERLFSQCGMFFCDKRNRLAPERLEHLM 201
            NP  WWA   NK+ + ++  +A+  L  PA S  SERLF++ G+ +  KRNRLAPER E ++
Sbjct:  119 NPYEWWALSTNKNGFPILSKLAKRYLITPASSVYSERLFTEAGLLYEKKRNRLAPERAEKIV 180          
BLAST of mRNA_H-elongata_contig117162.1343.1 vs. uniprot
Match: UPI001FA341B7 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001FA341B7)

HSP 1 Score: 59.7 bits (143), Expect = 5.660e-9
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 1
Query:    7 IYAGSNPLRWWAANKHKYSLIGSVARSVLAIPAISDPSERLFSQCGMFFCDKRNRLAPERLEHLM 201
            I    +P +WW+ANK +Y ++    R  L+ P  S  SERLFS+ G+ + +KRNRL P   E L+
Sbjct:  184 IDRNQDPYKWWSANKRQYPVLSKFVRIYLSAPCSSVYSERLFSEAGLIYEEKRNRLLPVNAEKLV 248          
BLAST of mRNA_H-elongata_contig117162.1343.1 vs. uniprot
Match: UPI001955CDF1 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955CDF1)

HSP 1 Score: 60.1 bits (144), Expect = 6.140e-9
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   22 NPLRWWAANKHKYSLIGSVARSVLAIPAISDPSERLFSQCGMFFCDKRNRLAPERLEHL 198
            NPL+WW  N+ K+  +  VA+S LA PAIS PSERLFS  G     KR  L  E ++ L
Sbjct:  529 NPLQWWKENETKFPTLAVVAKSYLAAPAISTPSERLFSAAGTIVSKKRASLTKEHVDML 587          
BLAST of mRNA_H-elongata_contig117162.1343.1 vs. uniprot
Match: UPI0013B3F9AA (zinc finger BED domain-containing protein 4-like n=1 Tax=Xiphophorus helleri TaxID=8084 RepID=UPI0013B3F9AA)

HSP 1 Score: 59.7 bits (143), Expect = 7.570e-9
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 1
Query:    1 PSIYAGSNPLRWWAANKHKYSLIGSVARSVLAIPAISDPSERLFSQCGMFFCDKRNRLAPERLEHLM 201
            P    G++PL WW      Y L+  V    L I A S PSER+FS+ G    ++RNR++P +L HL+
Sbjct:  257 PLFQRGADPLSWWETKALIYPLLSHVMAGRLCIVATSVPSERIFSKTGQIITERRNRISPAKLRHLV 323          
BLAST of mRNA_H-elongata_contig117162.1343.1 vs. uniprot
Match: UPI000C6CF883 (zinc finger BED domain-containing protein 1-like n=2 Tax=Xiphophorus TaxID=8082 RepID=UPI000C6CF883)

HSP 1 Score: 59.7 bits (143), Expect = 8.360e-9
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 1
Query:    1 PSIYAGSNPLRWWAANKHKYSLIGSVARSVLAIPAISDPSERLFSQCGMFFCDKRNRLAPERLEHLM 201
            P    G++PL WW      Y L+  V    L I A S PSER+FS+ G    ++RNR++P +L HL+
Sbjct:  456 PLFQRGADPLSWWETKALIYPLLSHVMAGRLCIVATSVPSERIFSKTGQIITERRNRISPAKLRHLV 522          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117162.1343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G8KUM7_STIJA4.680e-1145.16Putative zinc finger BED domain-containing protein... [more]
UPI000C13F7AD1.760e-948.33zinc finger BED domain-containing protein 4-like n... [more]
A0A4C1SU53_EUMVA1.860e-946.77Zinc finger BED domain-containing protein 4 n=1 Ta... [more]
A0A4C1WFL1_EUMVA2.310e-946.77Dimer_Tnp_hAT domain-containing protein n=2 Tax=Eu... [more]
UPI001E1E09A03.280e-941.54E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenar... [more]
A0A4C1SQH3_EUMVA5.560e-945.16Zinc finger BED domain-containing protein 4 n=1 Ta... [more]
UPI001FA341B75.660e-941.54Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
UPI001955CDF16.140e-949.15E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pimephal... [more]
UPI0013B3F9AA7.570e-940.30zinc finger BED domain-containing protein 4-like n... [more]
UPI000C6CF8838.360e-940.30zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117162contigH-elongata_contig117162:56..256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score69.3
Seed ortholog evalue7.6e-10
Seed eggNOG ortholog588596.U9U296
EggNOG free text desc.hAT family C-terminal dimerisation region
EggNOG OGs3A8WV@33154,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929681.9314885-CDS-H-elongata_contig117162:55..2561622929681.9314885-CDS-H-elongata_contig117162:55..256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117162 56..256 +
1691679117.7431724-CDS-H-elongata_contig117162:55..2561691679117.7431724-CDS-H-elongata_contig117162:55..256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117162 56..256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117162.1343.1prot_H-elongata_contig117162.1343.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117162 56..256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117162.1343.1

>prot_H-elongata_contig117162.1343.1 ID=prot_H-elongata_contig117162.1343.1|Name=mRNA_H-elongata_contig117162.1343.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
PSIYAGSNPLRWWAANKHKYSLIGSVARSVLAIPAISDPSERLFSQCGMF
FCDKRNRLAPERLEHLM
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mRNA from alignment at H-elongata_contig117162:56..256+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117162.1343.1 ID=mRNA_H-elongata_contig117162.1343.1|Name=mRNA_H-elongata_contig117162.1343.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig117162:56..256+ (Himanthalia elongata Himel1 dioecious)
CCTAGTATATATGCTGGAAGTAATCCACTAAGGTGGTGGGCAGCAAACAA GCACAAGTATTCGCTCATTGGTAGTGTAGCTCGATCAGTCCTGGCCATTC CTGCTATATCAGACCCATCTGAGCGCCTATTCTCACAGTGTGGTATGTTT TTTTGCGACAAAAGGAACAGGCTAGCACCTGAGCGTCTAGAGCACCTGAT G
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Coding sequence (CDS) from alignment at H-elongata_contig117162:56..256+

>mRNA_H-elongata_contig117162.1343.1 ID=mRNA_H-elongata_contig117162.1343.1|Name=mRNA_H-elongata_contig117162.1343.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig117162:56..256+ (Himanthalia elongata Himel1 dioecious)
CCTAGTATATATGCTGGAAGTAATCCACTAAGGTGGTGGGCAGCAAACAA
GCACAAGTATTCGCTCATTGGTAGTGTAGCTCGATCAGTCCTGGCCATTC
CTGCTATATCAGACCCATCTGAGCGCCTATTCTCACAGTGTGGTATGTTT
TTTTGCGACAAAAGGAACAGGCTAGCACCTGAGCGTCTAGAGCACCTGAT
GCCTAGTATATATGCTGGAAGTAATCCACTAAGGTGGTGGGCAGCAAACA
AGCACAAGTATTCGCTCATTGGTAGTGTAGCTCGATCAGTCCTGGCCATT
CCTGCTATATCAGACCCATCTGAGCGCCTATTCTCACAGTGTGGTATGTT
TTTTTGCGACAAAAGGAACAGGCTAGCACCTGAGCGTCTAGAGCACCTGA
TG
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