mRNA_H-elongata_contig59150.13427.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59150.13427.1
Unique NamemRNA_H-elongata_contig59150.13427.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59150.13427.1 vs. uniprot
Match: D7G3K3_ECTSI (G-patch domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K3_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 2.200e-56
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 1
Query:   16 ELERFLKKSAKASKGEAQDMEEDFEKNKLAEDNIGFQMLKKAGWKEGEGLGKEGEGAAAPVNMSAGAEGAGVGVKETHEVAEGDNEFEQYRKRMMLAYRFRPNPLNNPRRSYY 354
            ELERFLKKS KA+KGE  + EEDFEKNKLAEDNIGFQMLKKAGW EG+GLGKEGEGAA PVNM+AGA+GAGVGVKETHEV EGDNEFEQYRKRMMLAYRFRPNPLNNPRRSYY
Sbjct:  985 ELERFLKKSGKAAKGEEAEAEEDFEKNKLAEDNIGFQMLKKAGWTEGKGLGKEGEGAAVPVNMAAGADGAGVGVKETHEVTEGDNEFEQYRKRMMLAYRFRPNPLNNPRRSYY 1097          
BLAST of mRNA_H-elongata_contig59150.13427.1 vs. uniprot
Match: A0A7S2R910_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R910_9STRA)

HSP 1 Score: 140 bits (354), Expect = 3.000e-39
Identity = 78/116 (67.24%), Postives = 90/116 (77.59%), Query Frame = 1
Query:   13 QELERFLKKS-AKASKGEAQDMEEDFEKNKLAEDNIGFQMLKKAGWKEGEGLGKEGEGAAAPVNMSAGA-EGAGVGVKETHEVAEGDNEFEQYRKRMMLAYRFRPNPLNNPRRSYY 354
            ++LE F+K + AKA+  EA D   DFEKNKL   N+GFQML+ AGWKEGEGLG   +G   PV+M A A E AG+GV  THEV +GD+EFEQYRKRMMLAYRFRPNPLNNPRRSYY
Sbjct:  143 EDLEAFMKNAQAKAAGEEAADTGGDFEKNKLDSSNVGFQMLQNAGWKEGEGLGATAQGMVNPVDMRATAGESAGLGVAPTHEVGQGDDEFEQYRKRMMLAYRFRPNPLNNPRRSYY 258          
BLAST of mRNA_H-elongata_contig59150.13427.1 vs. uniprot
Match: A0A6V1MSH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MSH4_HETAK)

HSP 1 Score: 136 bits (342), Expect = 5.490e-38
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    1 FFFSQELERFLKKSAKASKGEAQDMEEDFEKNKLAEDNIGFQMLKKAGWKEGEGLGKEGEGAAAPVNMSAGA-EGAGVGVKETHEVAEGDNEFEQYRKRMMLAYRFRPNPLNNPRRSYY 354
            F   +EL+RFLKKS  A +G+A + E D+   KL   N+GFQML+KAGWKEGE +G + EG   PVNM   A EGAGVGV+ THEV + D+EF+QYRKRMMLAYRFRPNP+NNPRR+YY
Sbjct:   94 FLPKEELDRFLKKSDAAKEGKALE-ESDYADKKLDSSNLGFQMLQKAGWKEGEAVGGKKEGLVEPVNMHKPAGEGAGVGVQATHEVDQDDDEFDQYRKRMMLAYRFRPNPMNNPRRAYY 211          
BLAST of mRNA_H-elongata_contig59150.13427.1 vs. uniprot
Match: A0A7S2BY99_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BY99_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.020e-36
Identity = 74/119 (62.18%), Postives = 87/119 (73.11%), Query Frame = 1
Query:    1 FFFSQELERFLKKSAKASKGEAQDMEEDFEKNKLAEDNIGFQMLKKAGWKEGEGLGKEGEGAAAPVNMSAGA-EGAGVGVKETHEVAEGDNEFEQYRKRMMLAYRFRPNPLNNPRRSYY 354
            F    EL+ FL K+   + GE    E+DF+KN L   NIGFQML+KAGWKEGEGLG    G  APV+M+  A EG G+GVK+TH V + D+ F+QYRKRMMLAYRFRPNPLNNPRRSYY
Sbjct:  196 FIPKDELDTFLNKAEAVTTGEEVKAEQDFKKNMLDASNIGFQMLQKAGWKEGEGLGASAAGIVAPVDMNKKAGEGHGLGVKDTHAVEQDDDVFDQYRKRMMLAYRFRPNPLNNPRRSYY 314          
BLAST of mRNA_H-elongata_contig59150.13427.1 vs. uniprot
Match: A0A836C909_9STRA (G-patch domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C909_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.320e-36
Identity = 71/115 (61.74%), Postives = 86/115 (74.78%), Query Frame = 1
Query:   13 QELERFLKKSAKASKGEAQDMEEDFEKNKLAEDNIGFQMLKKAGWKEGEGLGKEGEGAAAPVNMSAGAEGAGVGVKETHEVAEGDN-EFEQYRKRMMLAYRFRPNPLNNPRRSYY 354
            +ELERFLK +  A+ GE  +  EDFEK+KL E NIG+QML++AGWKEGEGLGKEG GA+APVNM+              +  EGD+ EF+ YRKRMMLAY+FRPNPLNNPRR+YY
Sbjct:  125 EELERFLKGAKAAANGETLEAPEDFEKHKLDESNIGYQMLQRAGWKEGEGLGKEGSGASAPVNMAGAXXXXXXXXATATDAVEGDDDEFDSYRKRMMLAYKFRPNPLNNPRRAYY 239          
BLAST of mRNA_H-elongata_contig59150.13427.1 vs. uniprot
Match: A0A7S2R9A4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9A4_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.670e-36
Identity = 78/116 (67.24%), Postives = 90/116 (77.59%), Query Frame = 1
Query:   13 QELERFLKKS-AKASKGEAQDMEEDFEKNKLAEDNIGFQMLKKAGWKEGEGLGKEGEGAAAPVNMSAGA-EGAGVGVKETHEVAEGDNEFEQYRKRMMLAYRFRPNPLNNPRRSYY 354
            ++LE F+K + AKA+  EA D   DFEKNKL   N+GFQML+ AGWKEGEGLG   +G   PV+M A A E AG+GV  THEV +GD+EFEQYRKRMMLAYRFRPNPLNNPRRSYY
Sbjct:  614 EDLEAFMKNAQAKAAGEEAADTGGDFEKNKLDSSNVGFQMLQNAGWKEGEGLGATAQGMVNPVDMRATAGESAGLGVAPTHEVGQGDDEFEQYRKRMMLAYRFRPNPLNNPRRSYY 729          
BLAST of mRNA_H-elongata_contig59150.13427.1 vs. uniprot
Match: A0A8B6XKS3_HYDVU (SURP and G-patch domain-containing protein 1-like n=3 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XKS3_HYDVU)

HSP 1 Score: 125 bits (315), Expect = 4.290e-33
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    1 FFFSQELERFLKKSAKASKGEAQDMEEDFEKNKLAEDNIGFQMLKKAGWKEGEGLGKEGEGAAAPVNMS-AGAEGAGVGVKETHEVAEGDNEFEQYRKRMMLAYRFRPNPLNNPRRSYY 354
            F   +ELE+FL+K     +G   D   D+ K K+ EDNIGF+ML+KAGWKEGEGLG +G+G   P+N      + +G+GV++ HEV + D++FE YRKRMMLAY+FRPNPLNNPRR YY
Sbjct:  170 FLPPEELEKFLEKVKAVKEGREADFS-DYAKYKIQEDNIGFKMLQKAGWKEGEGLGSKGDGIVQPINKGKVSFDQSGIGVEKVHEVQQDDDDFEVYRKRMMLAYKFRPNPLNNPRRPYY 287          
BLAST of mRNA_H-elongata_contig59150.13427.1 vs. uniprot
Match: A0A2J7PE68_9NEOP (G-patch domain-containing protein n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PE68_9NEOP)

HSP 1 Score: 122 bits (306), Expect = 1.480e-32
Identity = 67/114 (58.77%), Postives = 83/114 (72.81%), Query Frame = 1
Query:   16 ELERFLKKSAKASKGEAQDMEEDFEKNKLAEDNIGFQMLKKAGWKEGEGLGKEGEGAAAPVNM-SAGAEGAGVGVKETHEVAEGDNEFEQYRKRMMLAYRFRPNPLNNPRRSYY 354
            ELERFL+K     +G   D+  D+++ KL EDNIGFQML+K GW EG+GLG EG G   PVN  S+  E  G+GV+   +V+ GD+E++ YRKRMMLAYRFRPNPLNNPRR YY
Sbjct:   99 ELERFLEKYNALKEGREPDLS-DYKEFKLKEDNIGFQMLQKLGWTEGQGLGSEGHGIVDPVNKASSRPENQGLGVERPDDVSHGDDEYDAYRKRMMLAYRFRPNPLNNPRRPYY 211          
BLAST of mRNA_H-elongata_contig59150.13427.1 vs. uniprot
Match: UPI001F5F57E6 (SURP and G-patch domain-containing protein 1-like isoform X2 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=UPI001F5F57E6)

HSP 1 Score: 125 bits (315), Expect = 1.630e-32
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    1 FFFSQELERFLKKSAKASKGEAQDMEEDFEKNKLAEDNIGFQMLKKAGWKEGEGLGKEGEGAAAPVNMS-AGAEGAGVGVKETHEVAEGDNEFEQYRKRMMLAYRFRPNPLNNPRRSYY 354
            F   +ELE+FL+K     +G   D   D+ K K+ EDNIGF+ML+KAGWKEGEGLG +G+G   P+N      + +G+GV++ HEV + D++FE YRKRMMLAY+FRPNPLNNPRR YY
Sbjct:  236 FLPPEELEKFLEKVKAVKEGREADFS-DYAKYKIQEDNIGFKMLQKAGWKEGEGLGSKGDGIVQPINKGKVSFDQSGIGVEKVHEVQQDDDDFEVYRKRMMLAYKFRPNPLNNPRRPYY 353          
BLAST of mRNA_H-elongata_contig59150.13427.1 vs. uniprot
Match: A0A7R9Q4S6_9ACAR (Hypothetical protein n=2 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9Q4S6_9ACAR)

HSP 1 Score: 122 bits (305), Expect = 2.790e-32
Identity = 64/119 (53.78%), Postives = 81/119 (68.07%), Query Frame = 1
Query:    1 FFFSQELERFLKKSAKASKGEAQDMEEDFEKNKLAEDNIGFQMLKKAGWKEGEGLGKEGEGAAAPVNMS-AGAEGAGVGVKETHEVAEGDNEFEQYRKRMMLAYRFRPNPLNNPRRSYY 354
            F   +EL++F+KK      G +   E D+   KL EDN+GFQMLKK GW EG+GLG EG G A P+N    G   AG+G     E+++ D+E+E YRKRMM+AYRFRPNPLNNPRR+YY
Sbjct:  104 FMPPEELDKFMKKWESLKGGTSLAPESDYSDLKLTEDNVGFQMLKKLGWSEGQGLGAEGTGTAEPINKGPVGVNNAGLGQTRPEELSDRDDEYEAYRKRMMMAYRFRPNPLNNPRRAYY 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59150.13427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3K3_ECTSI2.200e-5689.38G-patch domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S2R910_9STRA3.000e-3967.24Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V1MSH4_HETAK5.490e-3863.03Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2BY99_9STRA1.020e-3662.18Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836C909_9STRA1.320e-3661.74G-patch domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2R9A4_9STRA1.670e-3667.24Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8B6XKS3_HYDVU4.290e-3355.46SURP and G-patch domain-containing protein 1-like ... [more]
A0A2J7PE68_9NEOP1.480e-3258.77G-patch domain-containing protein n=1 Tax=Cryptote... [more]
UPI001F5F57E61.630e-3255.46SURP and G-patch domain-containing protein 1-like ... [more]
A0A7R9Q4S6_9ACAR2.790e-3253.78Hypothetical protein n=2 Tax=Medioppia subpectinat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59150contigH-elongata_contig59150:65..421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.4
Seed ortholog evalue2.3e-49
Seed eggNOG ortholog2880.D7G3K3
Preferred nameSUGP1
KEGG koko:K13096
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0031974,GO:0031981,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.RNA processing
EggNOG OGsKOG0965@1,KOG0965@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930960.0680094-CDS-H-elongata_contig59150:64..4211622930960.0680094-CDS-H-elongata_contig59150:64..421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59150 65..421 +
1691679641.0960376-CDS-H-elongata_contig59150:64..4211691679641.0960376-CDS-H-elongata_contig59150:64..421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59150 65..421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59150.13427.1prot_H-elongata_contig59150.13427.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59150 65..421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59150.13427.1

>prot_H-elongata_contig59150.13427.1 ID=prot_H-elongata_contig59150.13427.1|Name=mRNA_H-elongata_contig59150.13427.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
FFFSQELERFLKKSAKASKGEAQDMEEDFEKNKLAEDNIGFQMLKKAGWK
EGEGLGKEGEGAAAPVNMSAGAEGAGVGVKETHEVAEGDNEFEQYRKRMM
LAYRFRPNPLNNPRRSYY*
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mRNA from alignment at H-elongata_contig59150:65..421+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59150.13427.1 ID=mRNA_H-elongata_contig59150.13427.1|Name=mRNA_H-elongata_contig59150.13427.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at H-elongata_contig59150:65..421+ (Himanthalia elongata Himel1 dioecious)
TTTTTTTTTTCTCAGGAGCTCGAGCGCTTCTTGAAAAAATCTGCGAAAGC GTCTAAGGGAGAGGCTCAGGATATGGAGGAAGACTTCGAAAAGAACAAAC TGGCTGAGGACAATATTGGTTTCCAGATGCTCAAAAAGGCGGGGTGGAAA GAGGGAGAGGGGCTCGGGAAGGAAGGCGAGGGTGCGGCAGCCCCGGTGAA CATGAGCGCCGGAGCTGAAGGTGCTGGAGTCGGGGTGAAGGAGACTCACG AGGTAGCCGAAGGAGACAACGAGTTTGAGCAGTACCGCAAGCGGATGATG CTCGCTTACCGCTTCCGTCCTAACCCGCTCAACAACCCGCGCCGATCATA TTATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig59150:65..421+

>mRNA_H-elongata_contig59150.13427.1 ID=mRNA_H-elongata_contig59150.13427.1|Name=mRNA_H-elongata_contig59150.13427.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig59150:65..421+ (Himanthalia elongata Himel1 dioecious)
TTTTTTTTTTCTCAGGAGCTCGAGCGCTTCTTGAAAAAATCTGCGAAAGC
GTCTAAGGGAGAGGCTCAGGATATGGAGGAAGACTTCGAAAAGAACAAAC
TGGCTGAGGACAATATTGGTTTCCAGATGCTCAAAAAGGCGGGGTGGAAA
GAGGGAGAGGGGCTCGGGAAGGAAGGCGAGGGTGCGGCAGCCCCGGTGAA
CATGAGCGCCGGAGCTGAAGGTGCTGGAGTCGGGGTGAAGGAGACTCACG
AGGTAGCCGAAGGAGACAACGAGTTTGAGCAGTACCGCAAGCGGATGATG
CTCGCTTACCGCTTCCGTCCTAACCCGCTCAACAACCCGCGCCGATCATA
TTATTGATTTTTTTTTTCTCAGGAGCTCGAGCGCTTCTTGAAAAAATCTG
CGAAAGCGTCTAAGGGAGAGGCTCAGGATATGGAGGAAGACTTCGAAAAG
AACAAACTGGCTGAGGACAATATTGGTTTCCAGATGCTCAAAAAGGCGGG
GTGGAAAGAGGGAGAGGGGCTCGGGAAGGAAGGCGAGGGTGCGGCAGCCC
CGGTGAACATGAGCGCCGGAGCTGAAGGTGCTGGAGTCGGGGTGAAGGAG
ACTCACGAGGTAGCCGAAGGAGACAACGAGTTTGAGCAGTACCGCAAGCG
GATGATGCTCGCTTACCGCTTCCGTCCTAACCCGCTCAACAACCCGCGCC
GATCATATTATTGA
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