prot_H-elongata_contig59149.13426.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig59149.13426.1
Unique Name	prot_H-elongata_contig59149.13426.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	315

Homology

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BLAST of mRNA_H-elongata_contig59149.13426.1 vs. uniprot
Match: A0A6H5KCV4_9PHAE (Exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV4_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 3.950e-64
Identity = 156/320 (48.75%), Postives = 180/320 (56.25%), Query Frame = 0

Query:    1 VVIPLESLDPEDYCLKAVDCYRLNIPVRVSAEGPGYVSTAEPMSPPRRRRGKNYRGDFALD-----KKSDLDALSSVRQVDDDHEXXXXXXXXXXXXEADEEKGAIVVRVVPTDGSSPQREENATTEATGPECSDEGEEGAIVAAAGSAVEPLSQSQLQSPSLGSRAMGEGKSSGLKCSAPPRPFVPPSADLLCPILSGPRKGTVLLGLDCEMVDTKEGMGLARATLVNVKGQVVYDELVRPTKKVTDFKTQFSGITSEMLKGVTRTLRDTQYEILTFVGADTYLVGHSLESDLHALKIVHRRLIDTSELYPSSRGAPFK 315
            V +PLESLDPE +CL     YRL++P+RVS EGPGYVS+ +PM+P  +                  K  D               XXXXXXXXXXX    EE G +V+ +     S P                                                                  FVPPSAD LCPI SGP KGTV+LGLDCEMV T EG+ LARATLVNVKGQ+VYD+LV+PT KVTD+ TQFSGIT EMLKGVTRTLRD Q EIL+FV A+TYLVGHSL+SDL AL++VHRRLIDTSELYP+ RG PFK
Sbjct:  291 VRVPLESLDPEAFCLTPAARYRLDMPIRVSEEGPGYVSSDQPMAPRTQEXXXXXXXXXXXXXXXXXKIWDKAQAHRXXXXXXXXXXXXXXXXXXXXGAIKEEDGEVVLGIEAPSPSLPXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGEFVPPSADRLCPIPSGPHKGTVMLGLDCEMVYTSEGLELARATLVNVKGQMVYDKLVKPTLKVTDYNTQFSGITPEMLKGVTRTLRDAQREILSFVDAETYLVGHSLDSDLRALRLVHRRLIDTSELYPNPRGIPFK 601

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BLAST of mRNA_H-elongata_contig59149.13426.1 vs. uniprot
Match: D7FQ11_ECTSI (Exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ11_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 1.710e-62
Identity = 154/315 (48.89%), Postives = 179/315 (56.83%), Query Frame = 0

Query:    1 VVIPLESLDPEDYCLKAVDCYRLNIPVRVSAEGPGYVSTAEPMSPPRRRRGKNYRGDFALDKKSDLDALSSVRQVDDDHEXXXXXXXXXXXXEADEEKGAIVVRVVPTDGSSPQREENATTEATGPECSDEGEEGAIVAAAGSAVEPLSQSQLQSPSLGSRAMGEGKSSGLKCSAPPRPFVPPSADLLCPILSGPRKGTVLLGLDCEMVDTKEGMGLARATLVNVKGQVVYDELVRPTKKVTDFKTQFSGITSEMLKGVTRTLRDTQYEILTFVGADTYLVGHSLESDLHALKIVHRRLIDTSELYPSSRGAPFK 315
            V +PLESL+PE +CL     YRL++P+RVS EGPGYVS+ +PM PPR +                   +    Q      XXXXXXXXXXX    EE G +V+ +     S P                                                                  FVPPSA  LCPI SGP KGTV+LGLDCEM+ T EG+ LARATLVNVKGQ VYD+LV+PT KVTD+ TQFSGIT EMLKGVTRTLRD Q EIL+FV A+TYLVGHSL+SDL AL++VHRRLIDTSELYP+ RG PFK
Sbjct:  357 VKVPLESLNPEAFCLTPAARYRLDMPIRVSEEGPGYVSSDQPM-PPRTQEXXXXXXXXXXXXXXXXXRIWDKAQAHRXXXXXXXXXXXXXXGAIKEEDGEVVLGIEAPSPSLPXXXXXXXXXXXXXXXX-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGEFVPPSAGRLCPIPSGPHKGTVMLGLDCEMIYTSEGLELARATLVNVKGQTVYDKLVKPTLKVTDYNTQFSGITPEMLKGVTRTLRDAQREILSFVDAETYLVGHSLDSDLRALRLVHRRLIDTSELYPNLRGIPFK 663

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BLAST of mRNA_H-elongata_contig59149.13426.1 vs. uniprot
Match: A0A836CFL3_9STRA (Exonuclease domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL3_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.260e-34
Identity = 67/122 (54.92%), Postives = 93/122 (76.23%), Query Frame = 0

Query:  194 GPRKGTVLLGLDCEMVDTKEGMGLARATLVNVKGQVVYDELVRPTKKVTDFKTQFSGITSEMLKGVTRTLRDTQYEILTFVGADTYLVGHSLESDLHALKIVHRRLIDTSELYPSSRGAPFK 315
            G  +G  LLG+DCEMV+TK+G+ LAR +LVN +G+ VYD  VRP+  VT+  T++SGIT+  L+GVT TL+D Q ++L  + + TYLVGHSL+ DL AL++VH R+IDT+ LYPS +G P+K
Sbjct:   91 GHARGFKLLGIDCEMVETKKGLELARVSLVNARGEAVYDRHVRPSAPVTNHHTEYSGITAAHLEGVTATLKDVQADLLPLLDSHTYLVGHSLDGDLRALRLVHPRIIDTAVLYPSPKGMPYK 212

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BLAST of mRNA_H-elongata_contig59149.13426.1 vs. uniprot
Match: UPI000CD9378F (small RNA degrading nuclease 5 isoform X4 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9378F)

HSP 1 Score: 134 bits (337), Expect = 2.230e-32
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = 0

Query:  201 LLGLDCEMVDTKEGMGLARATLVNVKGQVVYDELVRPTKKVTDFKTQFSGITSEMLKGVTRTLRDTQYEILTFVGADTYLVGHSLESDLHALKIVHRRLIDTSELYPSSRGAPFK 315
            ++G+DCEM  T EG  L R TL++ KGQV+ D+LV+PT  +TD+ T++SGITSEML GVT TL+D Q E L  V  +T LVGHSLE+DL ALKI H  +IDT+ LY  SRG  +K
Sbjct:  211 IVGVDCEMCITNEGFELTRVTLIDFKGQVLLDKLVKPTNAITDYNTRYSGITSEMLNGVTTTLKDIQEEFLQIVNRETILVGHSLENDLLALKICHNLVIDTAVLYKHSRGGTYK 325

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BLAST of mRNA_H-elongata_contig59149.13426.1 vs. uniprot
Match: A0A7C9ELN5_OPUST (Exonuclease domain-containing protein n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9ELN5_OPUST)

HSP 1 Score: 126 bits (317), Expect = 3.250e-32
Identity = 64/115 (55.65%), Postives = 82/115 (71.30%), Query Frame = 0

Query:  201 LLGLDCEMVDTKEGMGLARATLVNVKGQVVYDELVRPTKKVTDFKTQFSGITSEMLKGVTRTLRDTQYEILTFVGADTYLVGHSLESDLHALKIVHRRLIDTSELYPSSRGAPFK 315
            +L LDCEM  T EG  L R TLV++KGQVV D+LV+P+  + D+ T++SGIT EML GVT +L+D Q E L  V  +T L+GHSLE+DL ALKI H  +IDT+ LY   RG P+K
Sbjct:    1 MLALDCEMCITCEGFELTRVTLVDIKGQVVLDQLVKPSNPIIDYNTRYSGITPEMLNGVTTSLKDIQEEFLKLVFKETILIGHSLENDLLALKISHDLVIDTAILYKHPRGHPYK 115

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BLAST of mRNA_H-elongata_contig59149.13426.1 vs. uniprot
Match: A0A2J6JLJ9_LACSA (Exonuclease domain-containing protein n=4 Tax=Lactuca TaxID=4235 RepID=A0A2J6JLJ9_LACSA)

HSP 1 Score: 134 bits (337), Expect = 8.880e-32
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = 0

Query:  201 LLGLDCEMVDTKEGMGLARATLVNVKGQVVYDELVRPTKKVTDFKTQFSGITSEMLKGVTRTLRDTQYEILTFVGADTYLVGHSLESDLHALKIVHRRLIDTSELYPSSRGAPFK 315
            ++G+DCEM  T EG  L R TL++ KGQV+ D+LV+PT  +TD+ T++SGITSEML GVT TL+D Q E L  V  +T LVGHSLE+DL ALKI H  +IDT+ LY  SRG  +K
Sbjct:  211 IVGVDCEMCITNEGFELTRVTLIDFKGQVLLDKLVKPTNAITDYNTRYSGITSEMLNGVTTTLKDIQEEFLQIVNRETILVGHSLENDLLALKICHNLVIDTAVLYKHSRGGTYK 325

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BLAST of mRNA_H-elongata_contig59149.13426.1 vs. uniprot
Match: I0Z456_COCSC (Exonuclease domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z456_COCSC)

HSP 1 Score: 127 bits (319), Expect = 2.190e-31
Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = 0

Query:  171 LKCSAPPRPFVPPSADLLCPI------LSGPRKGTVLLGLDCEMVDTKEGMGLARATLVNVKGQVVYDELVRPTKKVTDFKTQFSGITSEMLKGVTRTLRDTQYEILTFVGADTYLVGHSLESDLHALKIVHRRLIDTSELYPSSRGAPFK 315
            LK S  P P V P   L CP         G  +   L+GLDCEM  T+EG  L R +LV+ +GQV+ D+LV P   +TD+ T++SGIT+EML  VT  L D Q + L  V A+  LVGH+L++DL ALKI+H  +IDT+ LYP  +G P++
Sbjct:   49 LKSSEYPLPIVGPDGKLECPEGYIATKAGGGDEEPALIGLDCEMCVTEEGFELTRISLVDHQGQVMLDQLVVPDNPITDYNTRYSGITAEMLAPVTTRLADIQVKFLELVPAEALLVGHALQNDLRALKILHANIIDTAFLYPHPKGPPYR 199

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BLAST of mRNA_H-elongata_contig59149.13426.1 vs. uniprot
Match: A0A5J5WLS4_GOSBA (Exonuclease domain-containing protein n=4 Tax=Gossypium TaxID=3633 RepID=A0A5J5WLS4_GOSBA)

HSP 1 Score: 131 bits (329), Expect = 2.350e-31
Identity = 66/115 (57.39%), Postives = 83/115 (72.17%), Query Frame = 0

Query:  201 LLGLDCEMVDTKEGMGLARATLVNVKGQVVYDELVRPTKKVTDFKTQFSGITSEMLKGVTRTLRDTQYEILTFVGADTYLVGHSLESDLHALKIVHRRLIDTSELYPSSRGAPFK 315
            +L LDCEM  T EG  L R TLV+++GQVV D+LV+P+  +TD+ T+FSGIT EML GVT TL++ Q + LT V  DT LVGHSLE+DL ALKI H  +IDTS +Y   RG  +K
Sbjct:  209 MLALDCEMCITSEGFELTRVTLVDIEGQVVLDKLVKPSNPITDYNTRFSGITHEMLSGVTTTLQNVQEDFLTLVHKDTILVGHSLENDLLALKISHDLIIDTSVIYEHPRGGSYK 323

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BLAST of mRNA_H-elongata_contig59149.13426.1 vs. uniprot
Match: A0A444Z2Y9_ARAHY (Exonuclease domain-containing protein n=8 Tax=Arachis TaxID=3817 RepID=A0A444Z2Y9_ARAHY)

HSP 1 Score: 133 bits (334), Expect = 2.410e-31
Identity = 68/115 (59.13%), Postives = 83/115 (72.17%), Query Frame = 0

Query:  201 LLGLDCEMVDTKEGMGLARATLVNVKGQVVYDELVRPTKKVTDFKTQFSGITSEMLKGVTRTLRDTQYEILTFVGADTYLVGHSLESDLHALKIVHRRLIDTSELYPSSRGAPFK 315
            +L LDCEM  T EG  L R TLVN+ GQVV D+LV+P+  + D+ T+FSGIT EML GVT TLRD Q E L  V  +T+LVGHSLE+DL ALKI H  +IDT+ LY + RGA +K
Sbjct:  219 ILALDCEMCITTEGFELTRVTLVNINGQVVIDKLVKPSNDIVDYNTRFSGITYEMLDGVTTTLRDIQKEFLELVYKETFLVGHSLENDLLALKISHDLIIDTAVLYKNPRGASYK 333

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BLAST of mRNA_H-elongata_contig59149.13426.1 vs. uniprot
Match: A0A251MR96_PRUPE (Exonuclease domain-containing protein n=7 Tax=Prunus TaxID=3754 RepID=A0A251MR96_PRUPE)

HSP 1 Score: 132 bits (332), Expect = 4.110e-31
Identity = 68/115 (59.13%), Postives = 84/115 (73.04%), Query Frame = 0

Query:  201 LLGLDCEMVDTKEGMGLARATLVNVKGQVVYDELVRPTKKVTDFKTQFSGITSEMLKGVTRTLRDTQYEILTFVGADTYLVGHSLESDLHALKIVHRRLIDTSELYPSSRGAPFK 315
            +L LDCEM  T EG+ L RATLV +KG+VV D+LV+PT  + D+ T+FSGITSEML GVT +L+D Q E L  V  +T LVGHSLE+DL ALKI H  +IDT+ LY  SRG  +K
Sbjct:  214 MLALDCEMCVTSEGLELTRATLVTIKGKVVLDKLVKPTNTIVDYNTRFSGITSEMLDGVTTSLKDIQDEFLKLVYKETILVGHSLENDLLALKISHNLVIDTAVLYRYSRGGSYK 328

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig59149.13426.1 vs. uniprot

BLAST of mRNA_H-elongata_contig59149.13426.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KCV4_9PHAE	3.950e-64	48.75	Exonuclease domain-containing protein n=1 Tax=Ecto...	[more]
D7FQ11_ECTSI	1.710e-62	48.89	Exonuclease domain-containing protein n=1 Tax=Ecto...	[more]
A0A836CFL3_9STRA	1.260e-34	54.92	Exonuclease domain-containing protein n=1 Tax=Trib...	[more]
UPI000CD9378F	2.230e-32	57.39	small RNA degrading nuclease 5 isoform X4 n=1 Tax=...	[more]
A0A7C9ELN5_OPUST	3.250e-32	55.65	Exonuclease domain-containing protein n=2 Tax=Opun...	[more]
A0A2J6JLJ9_LACSA	8.880e-32	57.39	Exonuclease domain-containing protein n=4 Tax=Lact...	[more]
I0Z456_COCSC	2.190e-31	46.36	Exonuclease domain-containing protein n=1 Tax=Cocc...	[more]
A0A5J5WLS4_GOSBA	2.350e-31	57.39	Exonuclease domain-containing protein n=4 Tax=Goss...	[more]
A0A444Z2Y9_ARAHY	2.410e-31	59.13	Exonuclease domain-containing protein n=8 Tax=Arac...	[more]
A0A251MR96_PRUPE	4.110e-31	59.13	Exonuclease domain-containing protein n=7 Tax=Prun...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 200..315 e-value: 2.4E-8 score: 43.7
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 204..295 e-value: 9.7E-5 score: 23.0
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 199..315 e-value: 9.2E-32 score: 111.9
None	No IPR available	PANTHER	PTHR12801	EXONUCLEASE	coord: 84..314
None	No IPR available	PANTHER	PTHR12801:SF115	FI18136P1	coord: 84..314
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 202..308

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig59149	contig	H-elongata_contig59149:981..3662 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig59149.13426.1	mRNA_H-elongata_contig59149.13426.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig59149 981..3662 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig59149.13426.1 ID=prot_H-elongata_contig59149.13426.1|Name=mRNA_H-elongata_contig59149.13426.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=315bp
VVIPLESLDPEDYCLKAVDCYRLNIPVRVSAEGPGYVSTAEPMSPPRRRR
GKNYRGDFALDKKSDLDALSSVRQVDDDHEDDNYEEQEKEDGEADEEKGA
IVVRVVPTDGSSPQREENATTEATGPECSDEGEEGAIVAAAGSAVEPLSQ
SQLQSPSLGSRAMGEGKSSGLKCSAPPRPFVPPSADLLCPILSGPRKGTV
LLGLDCEMVDTKEGMGLARATLVNVKGQVVYDELVRPTKKVTDFKTQFSG
ITSEMLKGVTRTLRDTQYEILTFVGADTYLVGHSLESDLHALKIVHRRLI
DTSELYPSSRGAPFK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013520	Exonuclease_RNaseT/DNA_pol3
IPR036397	RNaseH_sf
IPR012337	RNaseH-like_sf