mRNA_H-elongata_contig59117.13424.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig59117.13424.1 vs. uniprot
Match: D7G0I7_ECTSI (PhyA2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0I7_ECTSI) HSP 1 Score: 337 bits (863), Expect = 3.290e-111 Identity = 163/196 (83.16%), Postives = 184/196 (93.88%), Query Frame = 1
Query: 1 SEEEVMDLSAFVTEYRHFEFDLLAARPFGSALLMHLVATLDQMETGEDLEAVAHSPDVKLVYYAAHDTNLLYVAELLDLKWVSEGYQPNHTPPGGELIFEAYMIEGELNVAAFFDIAKPSQASCCIRELQELTPSNPPGRVAITIPGCSEGEELLCPISKLRAIAIRAVNADCITPPELTSYVMDQWAKDPVVLRA 588
SEE+VMDL+AFVTEYRHFEFDLLAARPFGSALLMH+VA LDQMETGE+L+AVAH+PDVKLVYYAAHDTNLLY+AELLDLKWVS+G+QPNHTPPGGEL+FEAYM++GELNVAAFFDIA PSQ IREL +L+PSNPPGRVAITIPGCS+GEELLCP+SKLRA+AIR+V+A+CITPPEL YV D WAKD VVL+A
Sbjct: 279 SEEDVMDLAAFVTEYRHFEFDLLAARPFGSALLMHVVAALDQMETGENLDAVAHTPDVKLVYYAAHDTNLLYLAELLDLKWVSKGWQPNHTPPGGELVFEAYMVDGELNVAAFFDIATPSQ----IRELTDLSPSNPPGRVAITIPGCSQGEELLCPLSKLRALAIRSVDAECITPPELVEYVSDSWAKDAVVLQA 470
BLAST of mRNA_H-elongata_contig59117.13424.1 vs. uniprot
Match: A0A7S3SNZ1_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SNZ1_EMIHU) HSP 1 Score: 204 bits (520), Expect = 2.540e-61 Identity = 112/197 (56.85%), Postives = 137/197 (69.54%), Query Frame = 1
Query: 1 SEEEVMDLSAFVTEYRHFEFDLLAARPFGSALLMHLVATLDQMETGEDLEAVAHSPDVKLVYYAAHDTNLLYVAELLDLKWVSEGYQPNHTPPGGELIFEAYMIEGELN------VAAFFDIAKPSQASCCIRELQELTPSNP---PGRVAITIPGCS---EGEE---LLCPISKLRAIAIRAVNADCITPPELTSY 546
S EEVM+LSAFVT+YR FEFDLLAARPFGSALL H+ A+L Q E+G+ A+AH P +LVYYAAHDTNLLY+AELL LKW+S GYQPNHTPPGG L+FEA+ N +A +FDI P Q IREL L+ +P P RV +TIPGCS EG+ LLCP+S + +AV +CITPP+L ++
Sbjct: 137 SVEEVMELSAFVTQYRAFEFDLLAARPFGSALLSHIAASLTQWESGQREPALAHDPSPRLVYYAAHDTNLLYLAELLGLKWLSHGYQPNHTPPGGALVFEAFGPANPANPLDEWQIALYFDIQTPLQ----IRELTVLSDDDPATTPSRVPVTIPGCSTKAEGDPHAPLLCPLSTFTRLVRQAVQPECITPPDLRAF 329
BLAST of mRNA_H-elongata_contig59117.13424.1 vs. uniprot
Match: R1FLM4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FLM4_EMIHU) HSP 1 Score: 204 bits (518), Expect = 1.260e-59 Identity = 111/203 (54.68%), Postives = 136/203 (67.00%), Query Frame = 1
Query: 1 SEEEVMDLSAFVTEYRHFEFDLLAARPFGSALLMHLVATLDQMETGEDLEAVAHSPDVKLVYYAAHDTNLLYVAELLDLKWVSEGYQPNHTPPGGELIFEAYMIEGELN------VAAFFDIAKPSQASCCIRELQELTPSNP---PGRVAITIPGCSEGEE------LLCPISKLRAIAIRAVNADCITPPELTSYVMDQWA 564
S EEVM+ SAFVT+YR FEFDLLAARPFGSALL H+ A+L Q E+G+ A+AH P +LVYYAAHDTNLLY+AELL LKW+S GYQPNHTPPGG L+FEA+ N +A +FDI P Q IREL L+ +P P RV +TIPGCS E LLCP+S + +AV +CITPP+L ++ + A
Sbjct: 251 SVEEVMEFSAFVTQYRAFEFDLLAARPFGSALLSHIAASLTQWESGQREPALAHDPSPRLVYYAAHDTNLLYLAELLGLKWLSHGYQPNHTPPGGALVFEAFGPANPANPLDEWQIALYFDIQTPLQ----IRELTVLSDDDPATTPSRVPVTIPGCSTKAEDDPHAPLLCPLSTFTRLVRQAVQPECITPPDLRAFAKGRTA 449
BLAST of mRNA_H-elongata_contig59117.13424.1 vs. uniprot
Match: R1DX28_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DX28_EMIHU) HSP 1 Score: 181 bits (460), Expect = 1.160e-51 Identity = 98/162 (60.49%), Postives = 115/162 (70.99%), Query Frame = 1
Query: 1 SEEEVMDLSAFVTEYRHFEFDLLAARPFGSALLMHLVATLDQMETGEDLEAVAHSPDVKLVYYAAHDTNLLYVAELLDLKWVSEGYQPNHTPPGGELIFEAYMIEGELN------VAAFFDIAKPSQASCCIRELQELTPSNP---PGRVAITIPGCSEGEE 459
S EEVM+LSAFVT+YR FEFDLLAARPFGSALL H+ A+L Q E+G+ A+AH P +LVYYAAHDTNLLY+AELL LKW+S GYQPNHTPPGG L+FEA+ N +A +FDI P Q IREL L+ +P P RV +TIPGCS E
Sbjct: 246 SVEEVMELSAFVTQYRAFEFDLLAARPFGSALLSHIAASLTQWESGQREPALAHDPSPRLVYYAAHDTNLLYLAELLGLKWLSHGYQPNHTPPGGALVFEAFGPANPANPLDEWQIALYFDIQTPLQ----IRELTVLSDDDPATTPSRVPVTIPGCSTEAE 403
BLAST of mRNA_H-elongata_contig59117.13424.1 vs. uniprot
Match: A0A7S0ECG0_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ECG0_9EUKA) HSP 1 Score: 180 bits (457), Expect = 1.220e-50 Identity = 98/185 (52.97%), Postives = 123/185 (66.49%), Query Frame = 1
Query: 7 EEVMDLSAFVTEYRHFEFDLLAARPFGSALLMHLVATLDQMETGEDLEAVAHSPDVKLVYYAAHDTNLLYVAELLDLKWVSEGYQPNHTPPGGELIFEAYMIE------GELNVAAFFDIAKPSQASCCIRELQELTPSNP---PGRVAITIPGCS----EGEELLCPISKLRAIAIRAVNADCI 522
EEVM+LSAFVT+YR FEFD+LAARPFGSALL H+ ATL Q G AV H+ +LVYYAAHDTNLLY+AELL+LKW+++G+QPNHTPPGG L+ EA GE +A FFD+ P Q +R+L +L+ + P RV + +PGCS EG LLCP+ + R V A+CI
Sbjct: 267 EEVMELSAFVTQYRAFEFDMLAARPFGSALLAHVGATLQQWAGGAAQPAVTHAASERLVYYAAHDTNLLYLAELLELKWLAKGWQPNHTPPGGMLVVEALAPTNDANPTGEWQLAVFFDVQTPQQ----VRDLTDLSDDDEATKPSRVPVAVPGCSVQLREGGPLLCPLPTFLQLVGRTVRAECI 447
BLAST of mRNA_H-elongata_contig59117.13424.1 vs. uniprot
Match: A0A6H5K0D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D8_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.450e-33 Identity = 59/65 (90.77%), Postives = 64/65 (98.46%), Query Frame = 1
Query: 172 VKLVYYAAHDTNLLYVAELLDLKWVSEGYQPNHTPPGGELIFEAYMIEGELNVAAFFDIAKPSQA 366
VKLVYYAAHDTNLLY+AELLDLKWVSEG+QPNHTPPGGEL+FEAYM++GELNVAAFFDIA PSQA
Sbjct: 170 VKLVYYAAHDTNLLYLAELLDLKWVSEGWQPNHTPPGGELVFEAYMLDGELNVAAFFDIATPSQA 234
BLAST of mRNA_H-elongata_contig59117.13424.1 vs. uniprot
Match: A0A1V9YF74_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YF74_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 3.320e-19 Identity = 65/212 (30.66%), Postives = 100/212 (47.17%), Query Frame = 1
Query: 7 EEVMDLSAFVTEYRHFEFDLLAARPFGSALLMHLVATLDQMETGEDLEA-------VAHSPDVKLVYYAAHDTNLLYVAELLDLKWVSEGYQPNHTPPGGELIFEAYMIEG--------ELNVAAFFDIAKPSQASCCIRELQELTPSNPPGRVAITIPGCSEGE-------ELLCPISKLRAIAIRAVNADCITPPELTSYVMDQWAKDPV 576
E++++L A + + A FGS LL+HLVA++D+ T + + H + +YYA HD NLLY+ LL ++W + + N PG L+FE + EG + V A+F A P Q IR + L+P NPP RV ++IP CS+ ++ C +A ++V C++ L SY W PV
Sbjct: 265 EDMIELGAVHNAHIQLITNQFNAENFGSTLLVHLVASMDEAITQRPVPIAPGTGPHLLHDIASRFLYYAGHDINLLYLKNLLRMEWDTNNWNANQPNPGSMLLFEVHADEGKETSTSVEDFFVQAYFVAASPKQ----IRRAEVLSPQNPPIRVPVSIPQCSQDVVLPSNKVQVQCRFVDFKATVGKSVRHACVSE-SLQSYASTLWNAPPV 471
BLAST of mRNA_H-elongata_contig59117.13424.1 vs. uniprot
Match: A0A5D6YKW7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YKW7_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 3.170e-18 Identity = 60/183 (32.79%), Postives = 88/183 (48.09%), Query Frame = 1
Query: 73 ARPFGSALLMHLVATLDQMETGEDLEA-------VAHSPDVKLVYYAAHDTNLLYVAELLDLKWVSEGYQPNHTPPGGELIFEAYMIEGE----------LNVAA-------FFDIAKPSQASCCIRELQELTPSNPPGRVAITIPGCSE-------GEELLCPISKLRAIAIRAVNADCITP 528
A FG+ LL HL A+ +Q TG + + PD + +YYAAHD NLLYV LL L+W ++G+ P+ PG L+FE + E L+ AA +F A P Q +R L+ NPP RV +TIPGCSE ++ C + + +++ +C+ P
Sbjct: 308 AASFGATLLAHLTASFEQSSTGAPVPTAEGDGPHLLQPPDNRFLYYAAHDINLLYVRRLLRLEWHAKGWHPHQPVPGSMLVFELHSSLDERVVSVKTLRRLSAAAAKHFVKLYFVAASPEQ----MRHGHALSDRNPPDRVPVTIPGCSEDVVLPSGAVDVRCSFLTFKKLLGKSLKHECVAP 486
BLAST of mRNA_H-elongata_contig59117.13424.1 vs. uniprot
Match: A0A067BVH0_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BVH0_SAPPC) HSP 1 Score: 90.1 bits (222), Expect = 1.400e-17 Identity = 60/193 (31.09%), Postives = 94/193 (48.70%), Query Frame = 1
Query: 73 ARPFGSALLMHLVATLDQMETGEDLEA-------VAHSPDVKLVYYAAHDTNLLYVAELLDLKWVSEGYQPNHTPPGGELIFEAYM--------IEGELNVAAFFDIAKPSQASCCIRELQELTPSNPPGRVAITIPGCSE------GE-ELLCPISKLRAIAIRAVNADCITPPELTSYVMDQWAKDPVVLR 585
A FGS LL+HLVA +++ T + + H ++YA HD NLLY+ LL ++W + + N PG L+FE + + + V A+F A P Q IR + L+P+NPP RV ++IP CS+ GE ++ C +A +A+ C++P L SY W ++ +R
Sbjct: 289 AENFGSTLLVHLVAGMEEAITRVAVPIAPGPGPHLLHDVASNFLFYAGHDINLLYLKNLLRMEWATNDWNLNQPNPGSMLLFEVHADANKSASTSQEDFFVQAYFVAASPQQ----IRGAETLSPTNPPNRVPVSIPQCSKDVVLANGELQVQCRFQDFKATVGKAIRHACVSP-SLQSYASTLWHEEAASMR 476
BLAST of mRNA_H-elongata_contig59117.13424.1 vs. uniprot
Match: A0A024TG40_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TG40_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 3.540e-17 Identity = 61/173 (35.26%), Postives = 82/173 (47.40%), Query Frame = 1
Query: 82 FGSALLMHLVATLDQMETGEDLEAVAHSPDVK-----------LVYYAAHDTNLLYVAELLDLKWVSEGYQPNHTPPGGELIFEAYM------IEGELNVAAFFDIAKPSQASCCIRELQELTPSNPPGRVAITIPGCSEGEELL-------CPISKLRAIAIRAVNADCITP 528
FGS LL+HLVA++ Q EAVA D ++YA HD NLL++ LL L+W +E + + PG L+ E + E + V AFF A P+Q IR Q LTP NPP RV + IP CS+ L C S + A A+ C++P
Sbjct: 289 FGSTLLVHLVASMQQTIQQSSPEAVARHRDDDGPHLLQSLSNTFLFYAGHDINLLFLKNLLRLEWETENWLADQPNPGSMLVLELHADRPHSTAETDFYVEAFFMAASPTQ----IRHAQVLTPENPPDRVPVAIPHCSQDIVLANGTAAVRCAFSDFKHAAGLAIRQACVSP 457 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59117.13424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59117.13424.1 >prot_H-elongata_contig59117.13424.1 ID=prot_H-elongata_contig59117.13424.1|Name=mRNA_H-elongata_contig59117.13424.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp MDLSAFVTEYRHFEFDLLAARPFGSALLMHLVATLDQMETGEDLEAVAHSback to top mRNA from alignment at H-elongata_contig59117:362..3204- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59117.13424.1 ID=mRNA_H-elongata_contig59117.13424.1|Name=mRNA_H-elongata_contig59117.13424.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2843bp|location=Sequence derived from alignment at H-elongata_contig59117:362..3204- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59117:362..3204- >mRNA_H-elongata_contig59117.13424.1 ID=mRNA_H-elongata_contig59117.13424.1|Name=mRNA_H-elongata_contig59117.13424.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig59117:362..3204- (Himanthalia elongata Himel1 dioecious)back to top |