mRNA_H-elongata_contig5910.13423.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5910.13423.1 vs. uniprot
Match: A0A6H5L0W0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0W0_9PHAE) HSP 1 Score: 330 bits (846), Expect = 6.040e-100 Identity = 166/373 (44.50%), Postives = 248/373 (66.49%), Query Frame = 3
Query: 3 LKFGSRSYVEGNLLMVLVSIAAMACASGAIWGLQRTDVG-------TQGISSDVVAVLSLPNDTADALEGVSTSFDALLDGFGSCTNSVLVDTVLGSSSDYMESLVNDLQGEVEQLNREILNQLANEVQGATDSIDTTEGIRNGLVWPVISLSMLIVAIFFMIAIGTYECVPWGVKDYGCFSRCVSPFTIFLAAVIWLSTAAVIALSALSGDFCIDPDSSAQTFLVENQDEDETFAELVMYYTGDCTADNTVVDLITTSQELAKPFIGTILVAAYATVSVCDHMSSFAEELDQTLLNMWTILEDAAELTSCENLNGQYQSVVYDEFCDKLPRGLLGFWVSCIILTAFLLMLAALWAKMLWQKRADNQGGVMEA 1100
+KFG +++ GN+LMVL S+AA+A A+GAIWGLQR D G TQ +++D++ +L+L NDT+ AL+ V+ S++AL + C N ++ ++L + + SL +Q E++ ++ + +LA++VQ +D++ TEG R GL+WPV+ LS++ A F +++ TYECV +G +D S C++P TIF+A VIW+ A ++LSAL+GDFCIDPD++A + +N D + A+L+ YYTGDCT++N VD I T+QE+A P I +++ Y + C ++ + LD +L + WTILEDA EL+SCENLNG YQ+ VYDE C LP+GLLGFWVSC LT LL+LA W +ML Q+ + EA
Sbjct: 97 MKFGKQTHYGGNILMVLASVAAIASAAGAIWGLQRADSGLTNIEDATQNMATDMLTILNLANDTSVALDQVTASYEALQESVDGCDNGAILSSLLDAFD--INSLTASVQAEIDDVSEDNFGELADDVQAISDAVSDTEGARKGLLWPVLILSLMFTAFFVAVSVSTYECVAFGYRDCAPASCCINPCTIFVAVVIWICAALAVSLSALTGDFCIDPDANANELITDNTDGE--IADLITYYTGDCTSENAAVDAIITAQEVAVPIIQSVVPTLYQLEAACSDLAEPVQTLDNSLESFWTILEDAGELSSCENLNGLYQAAVYDELCKGLPQGLLGFWVSCAFLTVLLLILAIQWGRMLRQQTTEEDASTAEA 465 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5910.13423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5910.13423.1 >prot_H-elongata_contig5910.13423.1 ID=prot_H-elongata_contig5910.13423.1|Name=mRNA_H-elongata_contig5910.13423.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=391bp MVLVSIAAMACASGAIWGLQRTDVGTQGISSDVVAVLSLPNDTADALEGVback to top mRNA from alignment at H-elongata_contig5910:7107..11265+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5910.13423.1 ID=mRNA_H-elongata_contig5910.13423.1|Name=mRNA_H-elongata_contig5910.13423.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4159bp|location=Sequence derived from alignment at H-elongata_contig5910:7107..11265+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5910:7107..11265+ >mRNA_H-elongata_contig5910.13423.1 ID=mRNA_H-elongata_contig5910.13423.1|Name=mRNA_H-elongata_contig5910.13423.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2346bp|location=Sequence derived from alignment at H-elongata_contig5910:7107..11265+ (Himanthalia elongata Himel1 dioecious)back to top |