prot_H-elongata_contig591.13422.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig591.13422.1
Unique Nameprot_H-elongata_contig591.13422.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length198
Homology
BLAST of mRNA_H-elongata_contig591.13422.1 vs. uniprot
Match: D7FUI0_ECTSI (Rab32C, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI0_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 3.340e-85
Identity = 130/202 (64.36%), Postives = 158/202 (78.22%), Query Frame = 0
Query:    1 MAAFAETSPVIKILVVGDAGVGKTSIIQRYVHGHFSTTYKPTVGIDFFVKEITLESSHVGDAMSTF-----YVQLWDITSQDRSQNVNKVFFKGALGAFIVYDISRPQTFESVAKWKEELDSNLTLPNGNKLPVVLLGNKVVDLEVAPVDVLYIDGFVRKHGFIAWSDTSAKDESNAEFKRSCGCLIKKLLQDEQLFGTDKR 197
            M++ AETSPVIKILVVGDAGVGKTS+IQR+V+  FS T++PT+G+DFF+KE+ L     GD   +F      VQLWDI  QDR++ +N+ +FKGALGA +VYDISRPQTF+S AKWK+ELD+N+TLPNG+ LPVVLLGNKV DLEVA VDV YID FV  H F+AWSD SAKD  N +F+ S  CLI+KLL DE+LFG   R
Sbjct:    1 MSSAAETSPVIKILVVGDAGVGKTSVIQRFVNDEFSPTHRPTIGVDFFIKEVALN----GDQSESFPGTTVRVQLWDIAGQDRARKMNRAYFKGALGALVVYDISRPQTFDSAAKWKQELDANITLPNGSSLPVVLLGNKV-DLEVAKVDVSYIDSFVETHRFVAWSDVSAKDAINGDFEMSVACLIQKLLCDEELFGPGMR 197          
BLAST of mRNA_H-elongata_contig591.13422.1 vs. uniprot
Match: A0A7S2V4T6_9STRA (Ras-related protein Rab n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4T6_9STRA)

HSP 1 Score: 182 bits (462), Expect = 6.200e-55
Identity = 95/193 (49.22%), Postives = 131/193 (67.88%), Query Frame = 0
Query:    5 AETSPVIKILVVGDAGVGKTSIIQRYVHGHFSTTYKPTVGIDFFVKEITLESSHVGDAMSTFYVQLWDITSQDRSQNVNKVFFKGALGAFIVYDISRPQTFESVAKWKEELDSNLTLPNGNKLPVVLLGNKVVDLEVAPVDVLYIDGFVRKHGFIAWSDTSAKDESNAEFKRSCGCLIKKLLQDEQLFGTDKR 197
            A  S V+K+LV+GD   GKTSII+RYVH  FST +K TVG+DF +K++ +  + V        +QLWDI  QDR   + +V++K A GA +VYD++RP TFE V+KWKEE+D+ ++LPNG  +PVVLLGNK  DLE A VD  Y+D F ++HGF+ W DTSAK  +N     +   L++K+L+ E +   DKR
Sbjct:    4 AGESLVLKVLVLGDPATGKTSIIKRYVHNFFSTHHKTTVGVDFALKQLHVRGTDVR-------LQLWDIAGQDRFGAIARVYYKDAFGAMLVYDVTRPPTFEMVSKWKEEIDTKVSLPNGEPIPVVLLGNKS-DLEKAKVDTEYLDEFCKQHGFVGWFDTSAK--TNQNIVEAATFLVEKILEKEIVH--DKR 184          
BLAST of mRNA_H-elongata_contig591.13422.1 vs. uniprot
Match: A0A168LCS6_ABSGL (Ras-related protein Rab n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168LCS6_ABSGL)

HSP 1 Score: 171 bits (432), Expect = 3.800e-50
Identity = 91/189 (48.15%), Postives = 124/189 (65.61%), Query Frame = 0
Query:   12 KILVVGDAGVGKTSIIQRYVHGHFSTTYKPTVGIDFFVKEITLESSHVGDAMSTFYVQLWDITSQDRSQNVNKVFFKGALGAFIVYDISRPQTFESVAKWKEELDSNLTLPN---GNKLPVVLLGNKVVDLEVA---PVDVLYIDGFVRKHGFIAWSDTSAKDESNAEFKRSCGCLIKKLLQDEQLFGT 194
            KILVVGD G GKTSII+RYVH  FST YK T+G+DF +K I      +        +QLWDI  Q+R  N+ +V++K ALGAF+VYD++RPQTFE V KWK++LDS + LP    G ++PVVLL NK   L+     P++ L +D F R++GF +W DTSAKD SN +   +   LI+ ++  E+  G+
Sbjct:   12 KILVVGDLGTGKTSIIRRYVHNIFSTNYKSTIGVDFALKVIQWSPEII------VRLQLWDIAGQERFGNMTRVYYKEALGAFVVYDVTRPQTFEGVTKWKQDLDSKVALPEPWGGGRIPVVLLANKSDLLQEGHGQPINQLEMDDFCRQNGFASWFDTSAKDNSNID--EAARYLIQTIVSLEEEHGS 192          
BLAST of mRNA_H-elongata_contig591.13422.1 vs. uniprot
Match: A0A7S2S186_9STRA (Ras-related protein Rab n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S186_9STRA)

HSP 1 Score: 170 bits (431), Expect = 4.920e-50
Identity = 86/189 (45.50%), Postives = 125/189 (66.14%), Query Frame = 0
Query:    5 AETSPVIKILVVGDAGVGKTSIIQRYVHGHFSTTYKPTVGIDFFVKEITLESSHVGDAMSTFYVQLWDITSQDRSQNVNKVFFKGALGAFIVYDISRPQTFESVAKWKEELDSNLTLPNGNKLPVVLLGNKVVDLEVAPVDVLYIDGFVRKHGFIAWSDTSAKDESNAEFKRSCGCLIKKLLQDEQLFG 193
            A  S V+K+LV+GD   GKTSII+RYVH  FS  ++ TVG+DF +K++T+ +  V        +QLWDI  QDR   +++V++K ALGAF+VYD++RP TF++V KWK E+D+ + LPN   LPVVLL NK  D+E   +D   +D F  +HGFIAW +TSAK +   +   +   L++ +L+ E +F 
Sbjct:    3 APKSQVLKVLVLGDPATGKTSIIKRYVHNFFSNHHRTTVGVDFALKQLTVRNQLVR-------LQLWDIAGQDRFGAISRVYYKDALGAFLVYDLARPATFDTVVKWKGEIDAKVVLPNHEPLPVVLLANKC-DIEGVKIDSDALDKFCEEHGFIAWFETSAKTDHKID--AAARFLLENILEHEDIFA 181          
BLAST of mRNA_H-elongata_contig591.13422.1 vs. uniprot
Match: A0A6P9BRY3_PANGU (Ras-related protein Rab n=1 Tax=Pantherophis guttatus TaxID=94885 RepID=A0A6P9BRY3_PANGU)

HSP 1 Score: 170 bits (430), Expect = 5.650e-50
Identity = 85/183 (46.45%), Postives = 123/183 (67.21%), Query Frame = 0
Query:   12 KILVVGDAGVGKTSIIQRYVHGHFSTTYKPTVGIDFFVKEITLESSHVGDAMSTFYVQLWDITSQDRSQNVNKVFFKGALGAFIVYDISRPQTFESVAKWKEELDSNLTLPNGNKLPVVLLGNKV-VDLEVAPVDVLYIDGFVRKHGFIAWSDTSAKDESNAEFKRSCGCLIKKLLQDEQLFG 193
            K+LV+GD GVGKTS+I+RYVH HFS  Y+ T+G+DF +K +  +S    DA+    +QLWDI  Q+R  N+ +V+++ A+GAFIV+D++RP TFE+V KWK++LD+ LTLPNG  +P VLL NK   D E+   +   +D F + +GF+ W +TSAKD  N E   +  CL+K ++      G
Sbjct:   14 KVLVIGDLGVGKTSVIKRYVHHHFSPHYRATIGVDFALKVLRWDS----DALVR--LQLWDIAGQERFGNMTRVYYRDAVGAFIVFDVTRPATFEAVTKWKQDLDTKLTLPNGQVVPTVLLANKCDQDQELLVNNGFKMDQFCKDNGFVGWFETSAKDNINIE--EAARCLVKHIISSNSEPG 188          
BLAST of mRNA_H-elongata_contig591.13422.1 vs. uniprot
Match: A0A1X0RPG9_RHIZD (Ras-related protein Rab n=3 Tax=Rhizopus TaxID=4842 RepID=A0A1X0RPG9_RHIZD)

HSP 1 Score: 169 bits (427), Expect = 1.420e-49
Identity = 89/191 (46.60%), Postives = 124/191 (64.92%), Query Frame = 0
Query:   12 KILVVGDAGVGKTSIIQRYVHGHFSTTYKPTVGIDFFVKEITLESSHVGDAMSTFYVQLWDITSQDRSQNVNKVFFKGALGAFIVYDISRPQTFESVAKWKEELDSNLTLPN---GNKLPVVLLGNKVVDLEVA---PVDVLYIDGFVRKHGFIAWSDTSAKDESNAEFKRSCGCLIKKL--LQDEQLFGT 194
            KILVVGD G GKTSII+RYVH  FST YK T+G+DF +K I      +        +QLWDI  Q+R  N+ +V++K ALGA +VYDI+RPQTFE V +WK+++D+ + LP+   G ++PV+LL NK   ++     PV+   +D F R+HGFI W +TSAKD SN E   +  CL+  +  L++E +  T
Sbjct:    7 KILVVGDLGTGKTSIIRRYVHNIFSTNYKSTIGVDFALKVIQWTPDII------VRLQLWDIAGQERFGNMTRVYYKEALGAIVVYDITRPQTFEGVTRWKKDIDAKVALPDAWGGGQIPVILLANKTDLIQEGHGQPVNPAELDSFCREHGFIQWFETSAKDNSNIE--EATRCLVSAIVKLEEENVNNT 189          
BLAST of mRNA_H-elongata_contig591.13422.1 vs. uniprot
Match: A0A2G4SXI0_RHIZD (Ras-related protein Rab n=2 Tax=Rhizopus microsporus TaxID=58291 RepID=A0A2G4SXI0_RHIZD)

HSP 1 Score: 169 bits (427), Expect = 1.420e-49
Identity = 89/191 (46.60%), Postives = 124/191 (64.92%), Query Frame = 0
Query:   12 KILVVGDAGVGKTSIIQRYVHGHFSTTYKPTVGIDFFVKEITLESSHVGDAMSTFYVQLWDITSQDRSQNVNKVFFKGALGAFIVYDISRPQTFESVAKWKEELDSNLTLPN---GNKLPVVLLGNKVVDLEVA---PVDVLYIDGFVRKHGFIAWSDTSAKDESNAEFKRSCGCLIKKL--LQDEQLFGT 194
            KILVVGD G GKTSII+RYVH  FST YK T+G+DF +K I      +        +QLWDI  Q+R  N+ +V++K ALGA +VYDI+RPQTFE V +WK+++D+ + LP+   G ++PV+LL NK   ++     PV+   +D F R+HGFI W +TSAKD SN E   +  CL+  +  L++E +  T
Sbjct:    7 KILVVGDLGTGKTSIIRRYVHNIFSTNYKSTIGVDFALKVIQWTPDII------VRLQLWDIAGQERFGNMTRVYYKEALGAIVVYDITRPQTFEGVTRWKKDIDAKVALPDAWGGGQIPVILLANKTDLIQEGHGQPVNPAELDSFCREHGFIQWFETSAKDNSNIE--EATRCLVSAIVKLEEENVNNT 189          
BLAST of mRNA_H-elongata_contig591.13422.1 vs. uniprot
Match: Q63483_RAT (Ras-related protein Rab n=22 Tax=Eutheria TaxID=9347 RepID=Q63483_RAT)

HSP 1 Score: 169 bits (427), Expect = 1.470e-49
Identity = 85/179 (47.49%), Postives = 123/179 (68.72%), Query Frame = 0
Query:   12 KILVVGDAGVGKTSIIQRYVHGHFSTTYKPTVGIDFFVKEITLESSHVGDAMSTFYVQLWDITSQDRSQNVNKVFFKGALGAFIVYDISRPQTFESVAKWKEELDSNLTLPNGNKLPVVLLGNKVVD-LEVAPVDVLYIDGFVRKHGFIAWSDTSAKDESNAEFKRSCGCLIKKLLQDE 189
            K+LV+GD GVGKTSII+RYVH +FS+ Y+ T+G+DF +K +        D  +   +QLWDI  Q+R  N+ +V+++ A+GAFIV+D++RP TFE+VAKWK +LDS LTLPNG  + VVLL NK     +V   + L +D F ++HGF+ W +TSAK+  N +   +  CL+K +L +E
Sbjct:   11 KLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHW------DPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLANKCDQGKDVLVNNGLKMDQFCKEHGFVGWFETSAKENINID--EASRCLVKHILANE 181          
BLAST of mRNA_H-elongata_contig591.13422.1 vs. uniprot
Match: A0A5F9CM01_RABIT (Ras-related protein Rab n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=A0A5F9CM01_RABIT)

HSP 1 Score: 169 bits (428), Expect = 1.530e-49
Identity = 85/179 (47.49%), Postives = 123/179 (68.72%), Query Frame = 0
Query:   12 KILVVGDAGVGKTSIIQRYVHGHFSTTYKPTVGIDFFVKEITLESSHVGDAMSTFYVQLWDITSQDRSQNVNKVFFKGALGAFIVYDISRPQTFESVAKWKEELDSNLTLPNGNKLPVVLLGNKVVDL-EVAPVDVLYIDGFVRKHGFIAWSDTSAKDESNAEFKRSCGCLIKKLLQDE 189
            K+LV+GD GVGKTSII+RYVH +FS+ Y+ T+G+DF +K +        D  +   +QLWDI  Q+R  N+ +V+++ A+GAFIV+D++RP TFE+VAKWK +LDS LTLPNG  + VVLL NK     +V   + L +D F ++HGF+ W +TSAK+  N +   +  CL+K +L +E
Sbjct:   11 KLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHW------DPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLANKCDQAKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINID--EASRCLVKHILANE 181          
BLAST of mRNA_H-elongata_contig591.13422.1 vs. uniprot
Match: A0A2I0M147_COLLI (Ras-related protein Rab n=189 Tax=Aves TaxID=8782 RepID=A0A2I0M147_COLLI)

HSP 1 Score: 168 bits (426), Expect = 2.140e-49
Identity = 83/179 (46.37%), Postives = 122/179 (68.16%), Query Frame = 0
Query:   12 KILVVGDAGVGKTSIIQRYVHGHFSTTYKPTVGIDFFVKEITLESSHVGDAMSTFYVQLWDITSQDRSQNVNKVFFKGALGAFIVYDISRPQTFESVAKWKEELDSNLTLPNGNKLPVVLLGNKVVD-LEVAPVDVLYIDGFVRKHGFIAWSDTSAKDESNAEFKRSCGCLIKKLLQDE 189
            K+LV+GD GVGKTSII+RYVH +FS  Y+ T+G+DF +K ++       DA +   +QLWDI  Q+R  N+ +V+++ A+GAFIV+DI+RP TFE+V KWKE+LDS L LPNG  +P VLL NK    ++V   + + +D F +++GF+ W +TSAK+  N     +  CL+K ++  E
Sbjct:   12 KLLVIGDLGVGKTSIIKRYVHQNFSPHYRATIGVDFALKVLSW------DAETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDITRPATFEAVTKWKEDLDSKLVLPNGKPVPAVLLANKCDQGIDVLMNNGIKMDQFCKENGFVGWFETSAKE--NININEASRCLVKHIIASE 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig591.13422.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUI0_ECTSI3.340e-8564.36Rab32C, RAB family GTPase n=1 Tax=Ectocarpus silic... [more]
A0A7S2V4T6_9STRA6.200e-5549.22Ras-related protein Rab n=1 Tax=Fibrocapsa japonic... [more]
A0A168LCS6_ABSGL3.800e-5048.15Ras-related protein Rab n=1 Tax=Absidia glauca Tax... [more]
A0A7S2S186_9STRA4.920e-5045.50Ras-related protein Rab n=1 Tax=Rhizochromulina ma... [more]
A0A6P9BRY3_PANGU5.650e-5046.45Ras-related protein Rab n=1 Tax=Pantherophis gutta... [more]
A0A1X0RPG9_RHIZD1.420e-4946.60Ras-related protein Rab n=3 Tax=Rhizopus TaxID=484... [more]
A0A2G4SXI0_RHIZD1.420e-4946.60Ras-related protein Rab n=2 Tax=Rhizopus microspor... [more]
Q63483_RAT1.470e-4947.49Ras-related protein Rab n=22 Tax=Eutheria TaxID=93... [more]
A0A5F9CM01_RABIT1.530e-4947.49Ras-related protein Rab n=1 Tax=Oryctolagus cunicu... [more]
A0A2I0M147_COLLI2.140e-4946.37Ras-related protein Rab n=189 Tax=Aves TaxID=8782 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 34..50
score: 33.57
coord: 11..32
score: 41.51
coord: 125..138
score: 34.15
coord: 59..81
score: 20.97
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 8..184
e-value: 1.0E-5
score: -27.2
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 11..188
e-value: 1.5E-30
score: 117.5
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 13..184
e-value: 3.9E-5
score: -51.7
NoneNo IPR availableGENE3D3.40.50.300coord: 9..188
e-value: 1.6E-41
score: 143.7
NoneNo IPR availablePANTHERPTHR24073:SF839RAS-RELATED PROTEIN RAB-38coord: 8..190
NoneNo IPR availablePANTHERPTHR24073FAMILY NOT NAMEDcoord: 8..190
NoneNo IPR availablePROSITEPS51419RABcoord: 5..197
score: 22.309
IPR001806Small GTPasePFAMPF00071Rascoord: 12..173
e-value: 4.2E-32
score: 111.0
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 11..173
e-value: 4.7E-14
score: 50.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 8..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig591contigH-elongata_contig591:3255..14468 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig591.13422.1mRNA_H-elongata_contig591.13422.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig591 3255..14468 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig591.13422.1 ID=prot_H-elongata_contig591.13422.1|Name=mRNA_H-elongata_contig591.13422.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
MAAFAETSPVIKILVVGDAGVGKTSIIQRYVHGHFSTTYKPTVGIDFFVK
EITLESSHVGDAMSTFYVQLWDITSQDRSQNVNKVFFKGALGAFIVYDIS
RPQTFESVAKWKEELDSNLTLPNGNKLPVVLLGNKVVDLEVAPVDVLYID
GFVRKHGFIAWSDTSAKDESNAEFKRSCGCLIKKLLQDEQLFGTDKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase