mRNA_H-elongata_contig5909.13419.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5909.13419.1
Unique NamemRNA_H-elongata_contig5909.13419.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5909.13419.1 vs. uniprot
Match: A0A6H5KJD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD5_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 9.080e-42
Identity = 65/83 (78.31%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:   25 QVLGALKVLAGGNSFLDVAGFSRTSRTTAETSFHHFCEKFSEGLRDTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAW 273
            +VLG LKVLA G  F DVA FS  SRTTAETSFHHFCE FSEGL DTWVKLP G++L+KV EIYRKCGYPGA GSTDCTHF W
Sbjct:   58 KVLGTLKVLASGCCFQDVASFSLMSRTTAETSFHHFCENFSEGLWDTWVKLPRGDELKKVEEIYRKCGYPGATGSTDCTHFRW 140
[Close]
BLAST of mRNA_H-elongata_contig5909.13419.1 vs. uniprot
Match: A0A6H5L2S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2S9_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 3.870e-37
Identity = 63/83 (75.90%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:   25 QVLGALKVLAGGNSFLDVAGFSRTSRTTAETSFHHFCEKFSEGLRDTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAW 273
            Q   AL+VLA G  F DVA FS TSRTTAETSFHHFCEKFSEGL DTWVKL  G+ L+KV EIYRK GYPGA GSTDCTHF W
Sbjct:   17 QGCDALEVLASGCCFQDVASFSLTSRTTAETSFHHFCEKFSEGLWDTWVKLLRGDSLKKVEEIYRKYGYPGATGSTDCTHFRW 99
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BLAST of mRNA_H-elongata_contig5909.13419.1 vs. uniprot
Match: A0A6H5KT09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT09_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.180e-33
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:   97 SRTTAETSFHHFCEKFSEGLRDTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAW 273
            SRTTAETSFHHFCEKFSEGL DTWVKLP G++L+KV EIYRKCGYPGA GSTDCTHF W
Sbjct:    2 SRTTAETSFHHFCEKFSEGLWDTWVKLPRGDELKKVEEIYRKCGYPGATGSTDCTHFRW 60
[Close]
BLAST of mRNA_H-elongata_contig5909.13419.1 vs. uniprot
Match: A0A6H5KHV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV5_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 3.800e-32
Identity = 54/72 (75.00%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:   25 QVLGALKVLAGGNSFLDVAGFSRTSRTTAETSFHHFCEKFSEGLRDTWVKLPEGEDLEKVAEIYRKCGYPGA 240
            +V+G LKVLA G  F DVA FS  SRTTAETSFHHFCEKFSEGL DTWV LP G++ +KV EIYRKCGYPGA
Sbjct:   26 KVMGTLKVLASGCCFQDVASFSLMSRTTAETSFHHFCEKFSEGLWDTWVNLPGGDEFKKVEEIYRKCGYPGA 97
[Close]
BLAST of mRNA_H-elongata_contig5909.13419.1 vs. uniprot
Match: A0A6H5KGV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV3_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.510e-31
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:   25 QVLGALKVLAGGNSFLDVAGFSRTSRTTAETSFHHFCEKFSEGLRDTWVKLPEGEDLEKVAEIYRKCGYPGA 240
            +V+G LKVLA G  F DVA FS  SRTTAETSFHHFCEKFSEGL DTWVKLP G++ +KV EIYRKCGYPGA
Sbjct:  137 KVMGTLKVLASGCCFQDVASFSLMSRTTAETSFHHFCEKFSEGLWDTWVKLPGGDEFKKVEEIYRKCGYPGA 208
[Close]
BLAST of mRNA_H-elongata_contig5909.13419.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.870e-30
Identity = 53/83 (63.86%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:   25 QVLGALKVLAGGNSFLDVAGFSRTSRTTAETSFHHFCEKFSEGLRDTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAW 273
            QVLG L+ L  GN F DVA FS  SRTTAE SFH FC  F+ GL  TW++LPEGEDL +V   YR  GYPGAVGS DCTH  W
Sbjct:    5 QVLGVLQALGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEDLRRVESTYRSLGYPGAVGSIDCTHVPW 87
[Close]
BLAST of mRNA_H-elongata_contig5909.13419.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.700e-27
Identity = 52/83 (62.65%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:   25 QVLGALKVLAGGNSFLDVAGFSRTSRTTAETSFHHFCEKFSEGLRDTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAW 273
            +VLG L+VL  GN F DVA FS  SRTTAE SFH FC  F+ GL  TW++LPEGE L +V   YR  GYPGAVGS DCTH  W
Sbjct:  210 KVLGVLQVLGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEGLRRVESTYRSLGYPGAVGSIDCTHVPW 292
[Close]
BLAST of mRNA_H-elongata_contig5909.13419.1 vs. uniprot
Match: A0A6H5K1K5_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.430e-24
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:   97 SRTTAETSFHHFCEKFSEGLRDTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAW 273
            S  TAE SFHHFCEKFS  L DTWVKLP G++L++V  ++RK GYPGA+GSTDCTHF W
Sbjct:    2 SVATAEKSFHHFCEKFSAALWDTWVKLPVGDELKEVERVFRKSGYPGAIGSTDCTHFRW 60
[Close]
BLAST of mRNA_H-elongata_contig5909.13419.1 vs. uniprot
Match: A0A6H5JJM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.740e-24
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:   97 SRTTAETSFHHFCEKFSEGLRDTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAW 273
            S  TAE SFHHFCEKFS  L DTWVKLP G++L++V  ++RK GYPGA+GSTDCTHF W
Sbjct:    2 SVATAEKSFHHFCEKFSAALWDTWVKLPIGDELKEVERVFRKSGYPGAIGSTDCTHFRW 60
[Close]
BLAST of mRNA_H-elongata_contig5909.13419.1 vs. uniprot
Match: A0A6H5KW69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW69_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.660e-24
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:   97 SRTTAETSFHHFCEKFSEGLRDTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAW 273
            S  TAE SFHHFCEKFS  L DTWVKLP G++L++V  ++RK GYPGA+GSTDCTHF W
Sbjct:    2 SVATAEKSFHHFCEKFSAALWDTWVKLPVGDELKEVERVFRKSGYPGAIGSTDCTHFRW 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5909.13419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJD5_9PHAE9.080e-4278.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2S9_9PHAE3.870e-3775.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT09_9PHAE2.180e-3386.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHV5_9PHAE3.800e-3275.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGV3_9PHAE1.510e-3176.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY35_9PHAE2.870e-3063.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE1.700e-2762.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1K5_9PHAE1.430e-2469.49Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJM8_9PHAE1.740e-2469.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW69_9PHAE2.660e-2469.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5909contigH-elongata_contig5909:9138..9410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.4
Seed ortholog evalue3.9e-09
Seed eggNOG ortholog3712.Bo2g094960.1
EggNOG free text desc.Ribosomal protein-like protein
EggNOG OGs28IUF@1,2QR5Z@2759,37STI@33090
COG Functional cat.S
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.6194875-CDS-H-elongata_contig5909:9137..94101622930958.6194875-CDS-H-elongata_contig5909:9137..9410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5909 9138..9410 -
1691679640.6147904-CDS-H-elongata_contig5909:9137..94101691679640.6147904-CDS-H-elongata_contig5909:9137..9410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5909 9138..9410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5909.13419.1prot_H-elongata_contig5909.13419.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5909 9138..9410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5909.13419.1

>prot_H-elongata_contig5909.13419.1 ID=prot_H-elongata_contig5909.13419.1|Name=mRNA_H-elongata_contig5909.13419.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
VPRFAALPQVLGALKVLAGGNSFLDVAGFSRTSRTTAETSFHHFCEKFSE
GLRDTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAW
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mRNA from alignment at H-elongata_contig5909:9138..9410-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5909.13419.1 ID=mRNA_H-elongata_contig5909.13419.1|Name=mRNA_H-elongata_contig5909.13419.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at H-elongata_contig5909:9138..9410- (Himanthalia elongata Himel1 dioecious)
GTACCCCGCTTTGCTGCTCTGCCGCAGGTGCTGGGGGCCTTGAAGGTGTT
GGCTGGAGGAAACTCGTTCCTTGATGTTGCTGGGTTCTCTCGGACGAGCC
GTACGACTGCGGAGACATCCTTCCACCATTTTTGCGAGAAATTCTCGGAA
GGTCTGCGGGACACGTGGGTTAAACTCCCAGAGGGCGAGGACTTGGAGAA
GGTGGCGGAAATCTACAGGAAGTGTGGTTACCCGGGGGCGGTGGGCTCAA
CGGACTGCACCCACTTTGCCTGG
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Coding sequence (CDS) from alignment at H-elongata_contig5909:9138..9410-

>mRNA_H-elongata_contig5909.13419.1 ID=mRNA_H-elongata_contig5909.13419.1|Name=mRNA_H-elongata_contig5909.13419.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig5909:9138..9410- (Himanthalia elongata Himel1 dioecious)
GTACCCCGCTTTGCTGCTCTGCCGCAGGTGCTGGGGGCCTTGAAGGTGTT
GGCTGGAGGAAACTCGTTCCTTGATGTTGCTGGGTTCTCTCGGACGAGCC
GTACGACTGCGGAGACATCCTTCCACCATTTTTGCGAGAAATTCTCGGAA
GGTCTGCGGGACACGTGGGTTAAACTCCCAGAGGGCGAGGACTTGGAGAA
GGTGGCGGAAATCTACAGGAAGTGTGGTTACCCGGGGGCGGTGGGCTCAA
CGGACTGCACCCACTTTGCCTGGGTACCCCGCTTTGCTGCTCTGCCGCAG
GTGCTGGGGGCCTTGAAGGTGTTGGCTGGAGGAAACTCGTTCCTTGATGT
TGCTGGGTTCTCTCGGACGAGCCGTACGACTGCGGAGACATCCTTCCACC
ATTTTTGCGAGAAATTCTCGGAAGGTCTGCGGGACACGTGGGTTAAACTC
CCAGAGGGCGAGGACTTGGAGAAGGTGGCGGAAATCTACAGGAAGTGTGG
TTACCCGGGGGCGGTGGGCTCAACGGACTGCACCCACTTTGCCTGG
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