mRNA_H-elongata_contig59059.13416.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59059.13416.1
Unique NamemRNA_H-elongata_contig59059.13416.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: UPI00165228C0 (uncharacterized protein LOC118478942 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00165228C0)

HSP 1 Score: 60.1 bits (144), Expect = 1.240e-9
Identity = 31/83 (37.35%), Postives = 44/83 (53.01%), Query Frame = 1
Query:    1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
            M D+RLPK +M+GE++     VG Q+K +  CL   LK  GI  D W ++AQD   WR    +G +      IA  K +  +R
Sbjct:    1 MADSRLPKQLMYGELLHGKRSVGGQKKRFKDCLKISLKELGILNDSWEMLAQDRPSWRCKLTKGAKAAEAKRIAEAKQKHNVR 83          
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A6H5JMA1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA1_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.660e-9
Identity = 32/87 (36.78%), Postives = 45/87 (51.72%), Query Frame = 1
Query:    1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQ----WTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
            M+D RLPK ++ GE+ G AG  G QE +W+  L EDL +FG+  ++    W   A+D   W    E G   FM+ W   E   +  R
Sbjct:  144 MEDNRLPKRMLLGEMAGGAGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAEASAKR 230          
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A654HW91_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HW91_9CEST)

HSP 1 Score: 60.1 bits (144), Expect = 1.300e-8
Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 1
Query:    1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
            MDD RLPK +++G++   + R G Q + +   L   LK   IN   W  +A D   WR+T + G   +  N IAA KV+   R
Sbjct:  759 MDDERLPKRLIYGDVATGSRRQGSQIRRYKDTLKSSLKRLQINPTNWEEIAHDRPTWRRTVKTGAAIYEANRIAAAKVKREAR 841          
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A654HMC6_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HMC6_9CEST)

HSP 1 Score: 58.5 bits (140), Expect = 4.150e-8
Identity = 29/83 (34.94%), Postives = 44/83 (53.01%), Query Frame = 1
Query:    1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
            MDD RLPK +++G+++  + R G Q + +   L   LK   +N   W  +A D   WR+T + G   +  N IAA KV+   R
Sbjct:   12 MDDERLPKRLLYGDVVTGSRRQGGQIRRYKDTLKSSLKRLQLNPTNWEELALDRPTWRRTVKTGAAIYEANHIAAAKVKREAR 94          
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A7M3PXV5_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3PXV5_SPIER)

HSP 1 Score: 57.8 bits (138), Expect = 8.300e-8
Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 1
Query:    1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
            MDD RLPK +++G++   + R G Q + +   L   LK   IN   W  +A D   WR+T + G   +  N IAA KV+   R
Sbjct:  428 MDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKSSLKCLQINPTNWEELALDRPTWRRTLKTGAAIYEANRIAAAKVKCEAR 510          
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: C3ZFY5_BRAFL (C2H2-type domain-containing protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZFY5_BRAFL)

HSP 1 Score: 55.8 bits (133), Expect = 1.430e-7
Identity = 30/82 (36.59%), Postives = 39/82 (47.56%), Query Frame = 1
Query:    1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGL 246
            MDD RLPK +++GE+      VG+ +  +   L   LK F I  D W + A D   WR+   QG          AEK RT L
Sbjct:   62 MDDHRLPKILLYGELAEGKRHVGRPKLRYKDSLKATLKDFSIPVDSWELAASDRSQWRRLVHQGAG-------IAEKRRTAL 136          
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A6H5JHK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK9_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.880e-7
Identity = 29/87 (33.33%), Postives = 43/87 (49.43%), Query Frame = 1
Query:    1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQ----WTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
            M+D+RLPK ++ GE+    G  G QE +W+  L EDL +F +  ++    W   A+D   W    E G   FM+ W   E   +  R
Sbjct:  121 MEDSRLPKRMLLGEMARGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDGAAWFMRKWHRQEAEASAKR 207          
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A654GTZ3_9CEST (C2H2-type domain-containing protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654GTZ3_9CEST)

HSP 1 Score: 55.5 bits (132), Expect = 5.370e-7
Identity = 29/83 (34.94%), Postives = 42/83 (50.60%), Query Frame = 1
Query:    1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
            MDD RLPK +++G++   + R G Q + +   L   LK   I    W  +A D   WR+T + G   +  N IAA KV+   R
Sbjct:  425 MDDERLPKRLLYGDVATGSRRQGGQIRRYNDTLKSSLKRLQIKPTNWEELALDRPTWRRTVKTGAAIYEANRIAAAKVKREAR 507          
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A7M3VK05_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3VK05_SPIER)

HSP 1 Score: 55.1 bits (131), Expect = 7.100e-7
Identity = 29/83 (34.94%), Postives = 41/83 (49.40%), Query Frame = 1
Query:    1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
            MDD RLPK +++G++   + R G Q + +   L   LK   IN   W  +A D   WR T + G   +  N IAA K +   R
Sbjct:  162 MDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKSSLKRLQINPTNWDELALDRPTWRGTVKTGAAIYEANRIAAAKAKREAR 244          
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A7M3QR85_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QR85_SPIER)

HSP 1 Score: 54.7 bits (130), Expect = 9.420e-7
Identity = 28/78 (35.90%), Postives = 41/78 (52.56%), Query Frame = 1
Query:    1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKV 234
            MDD RLPK +++G++   + R G Q + +   L   LK   IN   W  +A+D   WR+T + G   +  N IAA K 
Sbjct:  253 MDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKFSLKRLQINPANWEDLARDRPTWRRTVKTGAAIYGANRIAAAKT 330          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00165228C01.240e-937.35uncharacterized protein LOC118478942 n=1 Tax=Aplys... [more]
A0A6H5JMA1_9PHAE3.660e-936.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A654HW91_9CEST1.300e-836.14Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A654HMC6_9CEST4.150e-834.94Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A7M3PXV5_SPIER8.300e-836.14Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
C3ZFY5_BRAFL1.430e-736.59C2H2-type domain-containing protein n=2 Tax=Branch... [more]
A0A6H5JHK9_9PHAE1.880e-733.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A654GTZ3_9CEST5.370e-734.94C2H2-type domain-containing protein n=1 Tax=Sparga... [more]
A0A7M3VK05_SPIER7.100e-734.94Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A7M3QR85_SPIER9.420e-735.90Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59059contigH-elongata_contig59059:37..291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.4301891-CDS-H-elongata_contig59059:36..2911622930958.4301891-CDS-H-elongata_contig59059:36..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59059 37..291 +
1691679640.5533419-CDS-H-elongata_contig59059:36..2911691679640.5533419-CDS-H-elongata_contig59059:36..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59059 37..291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59059.13416.1prot_H-elongata_contig59059.13416.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59059 37..291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59059.13416.1

>prot_H-elongata_contig59059.13416.1 ID=prot_H-elongata_contig59059.13416.1|Name=mRNA_H-elongata_contig59059.13416.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIV
AQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLRHA
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mRNA from alignment at H-elongata_contig59059:37..291+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59059.13416.1 ID=mRNA_H-elongata_contig59059.13416.1|Name=mRNA_H-elongata_contig59059.13416.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at H-elongata_contig59059:37..291+ (Himanthalia elongata Himel1 dioecious)
ATGGACGACACGAGATTGCCGAAGTGTGTGATGTTCGGAGAAATTATGGG GGTCGCGGGTCGCGTGGGGAAGCAGGAAAAAGAGTGGATGGGGTGTCTTC TGGAAGACCTCAAATCTTTCGGTATCAACACCGACCAGTGGACGATTGTA GCCCAGGATGATGGGGATTGGCGCAAGACGGCGGAACAAGGGACGGAACA TTTCATGAAGAATTGGATCGCTGCAGAGAAAGTCAGGACTGGACTACGGC ATGCA
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Coding sequence (CDS) from alignment at H-elongata_contig59059:37..291+

>mRNA_H-elongata_contig59059.13416.1 ID=mRNA_H-elongata_contig59059.13416.1|Name=mRNA_H-elongata_contig59059.13416.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig59059:37..291+ (Himanthalia elongata Himel1 dioecious)
ATGGACGACACGAGATTGCCGAAGTGTGTGATGTTCGGAGAAATTATGGG
GGTCGCGGGTCGCGTGGGGAAGCAGGAAAAAGAGTGGATGGGGTGTCTTC
TGGAAGACCTCAAATCTTTCGGTATCAACACCGACCAGTGGACGATTGTA
GCCCAGGATGATGGGGATTGGCGCAAGACGGCGGAACAAGGGACGGAACA
TTTCATGAAGAATTGGATCGCTGCAGAGAAAGTCAGGACTGGACTACGGC
ATGCAATGGACGACACGAGATTGCCGAAGTGTGTGATGTTCGGAGAAATT
ATGGGGGTCGCGGGTCGCGTGGGGAAGCAGGAAAAAGAGTGGATGGGGTG
TCTTCTGGAAGACCTCAAATCTTTCGGTATCAACACCGACCAGTGGACGA
TTGTAGCCCAGGATGATGGGGATTGGCGCAAGACGGCGGAACAAGGGACG
GAACATTTCATGAAGAATTGGATCGCTGCAGAGAAAGTCAGGACTGGACT
ACGGCATGCA
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