mRNA_H-elongata_contig59046.13415.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59046.13415.1
Unique NamemRNA_H-elongata_contig59046.13415.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59046.13415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59046contigH-elongata_contig59046:1609..3609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionDomain of unknown function DUF4098
Ec32 orthologEc-27_004730.1
Hectar predicted targeting categoryother localisation
Exons5
Model size789
Cds size786
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59046.13415.1prot_H-elongata_contig59046.13415.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59046 1611..3609 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.305891-CDS-H-elongata_contig59046:1610..17591622930958.305891-CDS-H-elongata_contig59046:1610..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59046 1611..1759 -
1691679640.5056403-CDS-H-elongata_contig59046:1610..17591691679640.5056403-CDS-H-elongata_contig59046:1610..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59046 1611..1759 -
1622930958.325063-CDS-H-elongata_contig59046:1937..20281622930958.325063-CDS-H-elongata_contig59046:1937..2028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59046 1938..2028 -
1691679640.5145953-CDS-H-elongata_contig59046:1937..20281691679640.5145953-CDS-H-elongata_contig59046:1937..2028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59046 1938..2028 -
1622930958.3430157-CDS-H-elongata_contig59046:2340..24331622930958.3430157-CDS-H-elongata_contig59046:2340..2433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59046 2341..2433 -
1691679640.5233564-CDS-H-elongata_contig59046:2340..24331691679640.5233564-CDS-H-elongata_contig59046:2340..2433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59046 2341..2433 -
1622930958.3590913-CDS-H-elongata_contig59046:3005..33761622930958.3590913-CDS-H-elongata_contig59046:3005..3376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59046 3006..3376 -
1691679640.533526-CDS-H-elongata_contig59046:3005..33761691679640.533526-CDS-H-elongata_contig59046:3005..3376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59046 3006..3376 -
1622930958.3723762-CDS-H-elongata_contig59046:3527..36091622930958.3723762-CDS-H-elongata_contig59046:3527..3609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59046 3528..3609 -
1691679640.5428064-CDS-H-elongata_contig59046:3527..36091691679640.5428064-CDS-H-elongata_contig59046:3527..3609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59046 3528..3609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59046.13415.1

>prot_H-elongata_contig59046.13415.1 ID=prot_H-elongata_contig59046.13415.1|Name=mRNA_H-elongata_contig59046.13415.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=262bp
VPVPPGDADLPVVGADLSAPSATLDMPGAGDGLKGPEMPSSSAPSVELPS
DAPDVLVSAAPDMSVDLSKPSAEISDKMLEMPSALTSSSDDVAVPGVSMD
VSSPSVDLGGEMPEASVDVPALCNLSGDIPSTEVSGDTPSAEGLKANVGA
KVPEGSESPVDPTVPVLGLSGPDFGVSGELPKAPDLDVSKTVPEGTVDAP
SVEIGASLPLAKAAAPEGGVNVNVAAPAPSVDASGPSVDLPSIGDSLSVS
APDVSVEVPAVG
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mRNA from alignment at H-elongata_contig59046:1609..3609-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59046.13415.1 ID=mRNA_H-elongata_contig59046.13415.1|Name=mRNA_H-elongata_contig59046.13415.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2001bp|location=Sequence derived from alignment at H-elongata_contig59046:1609..3609- (Himanthalia elongata Himel1 dioecious)
GTGCCTGTTCCTCCCGGAGATGCAGACTTGCCCGTTGTTGGCGCCGATTT
GTCGGCCCCATCCGCAACACTTGACATGCCCGGTGAGACTTTTTTTTTTC
CTGTGGCTCAGCTCGACATGGACATGGTGGGTTTTCATTCGCCCGCACAG
TCGAAGTTACCATCAGCCTTGAATGGTTTTGAGACTACACTCACATATCT
TGATGTTCCCTTTCATTGACTTCCCTCGACCAGGCGCTGGGGATGGCTTG
AAGGGACCCGAGATGCCGTCGAGTAGCGCACCATCTGTGGAGTTGCCCTC
TGATGCTCCCGATGTGCTCGTCTCCGCCGCCCCCGACATGAGCGTCGACC
TATCGAAACCATCCGCGGAAATAAGCGACAAAATGCTCGAGATGCCGTCG
GCGCTGACGTCTTCCAGTGACGATGTTGCTGTCCCCGGTGTAAGCATGGA
CGTCTCGTCGCCTTCGGTGGATCTGGGCGGCGAGATGCCCGAGGCATCCG
TGGATGTTCCCGCGCTTTGCAATTTGTCTGGTGACATTCCCTCTACCGAG
GTCTCTGGAGACACCCCCTCCGCGGAGGGCCTAAAGGCAAACGTGGGCGC
AAAGGTAGGTGGTGGTGATGGTTATCTCACAATGTCGGCGAAGGAGAGGT
TATCGTGTCAAATCAGTGGACGTGAGAGATATTGAAGGTTCGGTTTGCGC
GGTTTAATGCAAATTGATAGAAAAAGGGAAACCGTCTATGTAATTTTTAA
GCGCGCGTGTGCTTTGGCGCGGAATTTGTATATTATTAAAAATAGTATTG
TGTTTTATTCGTGGATCAGTGTCATCAATACTGTATATATACATATATAT
ATATAATTTTATATATATAGTATTTTTTTTTTCTGCATTTACAGCATGGG
AACAAGATAAAATGTCTGTATATCTATATCTATAATCAACTCGTTTCTGT
TTTTTGTTTTCGTCCCTTCTTCAGTTAGTATCTTGGAAAGATTTGTCGTC
TATTTCCTAGGTTGATATCTTTGACGTTGGCGTCCAAGGATGGTCGTAAT
TTTTCACAGTTGACAATCTTGTATCTCTACGATTTTTGAGTAGACCCGGC
GGTGTGTGTACCTTCCTTTCTCCACACATTGAGAGGGGTCTCAACCAAGG
CTTCGTGCCGTTGCCTGGTCGGTCAGGTGCCGGAAGGCAGTGAGTCTCCA
GTGGACCCTACCGTTCCGGTGCTGGGTCTTTCTGGGCCCGACTTCGGCGT
GAGCGGTGAACTTCCGAAGGTAAGGTATCCGGGGACGTTTCAATAGCGTC
GGTAAAAAATATATGATGCAGCGCAAGAAATCCACTCATTCGGCGACGTG
ACCAACTGCTGGTTGTGCTGGGGTGTAATGTTGGAGCGACACGCTTTGTT
TTCCGTGGGCCCTGTGTGCTGCGCGCACCTTGCGATCGACGGTTGGGGCT
TCATGCGCGGACAGTCTGCGTCGCCTCCTCTCTACGATGGTCTTGAAATG
TGGAGAGGAGAGGTAATGAGAGGACTCGCTTAGTGTGATGGTCGTTGATC
CCTCGTCTGTCTGCCTCGTGACGTTTAGCAGGCACCTGACCTGGACGTTT
CCAAAACGGTGCCCGAGGGGACGGTTGATGCACCCTCCGTGGAGATTGGC
GCGTCTTTGCCTCTGGCCAAAGGTGAGTATTTGGGTTTTACCAAAGTCCT
GCCGTTGTGCTTTAAAAGCGACACAGAGGCTAGATTTCGTGTGTCTAGGG
GTCGTCCGTCTTTGGGGGGTTGGGTGTTCGACCTTAAGCGATATTTGTCG
CGAAGCCCTCTCCCACGACGTGTTTTCTGTCCTTTTTTGTGTGTGAACAG
CGGCCGCTCCGGAGGGCGGTGTGAACGTAAACGTTGCAGCGCCGGCACCG
TCTGTGGACGCGAGCGGTCCGTCTGTCGATCTTCCGTCTATCGGCGACAG
TTTGTCTGTATCCGCCCCGGACGTGTCAGTCGAAGTTCCCGCGGTCGGCG
A
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Coding sequence (CDS) from alignment at H-elongata_contig59046:1609..3609-

>mRNA_H-elongata_contig59046.13415.1 ID=mRNA_H-elongata_contig59046.13415.1|Name=mRNA_H-elongata_contig59046.13415.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1572bp|location=Sequence derived from alignment at H-elongata_contig59046:1609..3609- (Himanthalia elongata Himel1 dioecious)
GTGCCTGTTCCTCCCGGAGATGCAGACTTGCCCGTTGTTGGCGCCGATTT
GTCGGCCCCATCCGCAACACTTGACATGCCCGGTGCCTGTTCCTCCCGGA
GATGCAGACTTGCCCGTTGTTGGCGCCGATTTGTCGGCCCCATCCGCAAC
ACTTGACATGCCCGGCGCTGGGGATGGCTTGAAGGGACCCGAGATGCCGT
CGAGTAGCGCACCATCTGTGGAGTTGCCCTCTGATGCTCCCGATGTGCTC
GTCTCCGCCGCCCCCGACATGAGCGTCGACCTATCGAAACCATCCGCGGA
AATAAGCGACAAAATGCTCGAGATGCCGTCGGCGCTGACGTCTTCCAGTG
ACGATGTTGCTGTCCCCGGTGTAAGCATGGACGTCTCGTCGCCTTCGGTG
GATCTGGGCGGCGAGATGCCCGAGGCATCCGTGGATGTTCCCGCGCTTTG
CAATTTGTCTGGTGACATTCCCTCTACCGAGGTCTCTGGAGACACCCCCT
CCGCGGAGGGCCTAAAGGCAAACGTGGGCGCAAAGGCGCTGGGGATGGCT
TGAAGGGACCCGAGATGCCGTCGAGTAGCGCACCATCTGTGGAGTTGCCC
TCTGATGCTCCCGATGTGCTCGTCTCCGCCGCCCCCGACATGAGCGTCGA
CCTATCGAAACCATCCGCGGAAATAAGCGACAAAATGCTCGAGATGCCGT
CGGCGCTGACGTCTTCCAGTGACGATGTTGCTGTCCCCGGTGTAAGCATG
GACGTCTCGTCGCCTTCGGTGGATCTGGGCGGCGAGATGCCCGAGGCATC
CGTGGATGTTCCCGCGCTTTGCAATTTGTCTGGTGACATTCCCTCTACCG
AGGTCTCTGGAGACACCCCCTCCGCGGAGGGCCTAAAGGCAAACGTGGGC
GCAAAGGTGCCGGAAGGCAGTGAGTCTCCAGTGGACCCTACCGTTCCGGT
GCTGGGTCTTTCTGGGCCCGACTTCGGCGTGAGCGGTGAACTTCCGAAGG
TGCCGGAAGGCAGTGAGTCTCCAGTGGACCCTACCGTTCCGGTGCTGGGT
CTTTCTGGGCCCGACTTCGGCGTGAGCGGTGAACTTCCGAAGGCACCTGA
CCTGGACGTTTCCAAAACGGTGCCCGAGGGGACGGTTGATGCACCCTCCG
TGGAGATTGGCGCGTCTTTGCCTCTGGCCAAAGGCACCTGACCTGGACGT
TTCCAAAACGGTGCCCGAGGGGACGGTTGATGCACCCTCCGTGGAGATTG
GCGCGTCTTTGCCTCTGGCCAAAGCGGCCGCTCCGGAGGGCGGTGTGAAC
GTAAACGTTGCAGCGCCGGCACCGTCTGTGGACGCGAGCGGTCCGTCTGT
CGATCTTCCGTCTATCGGCGACAGTTTGTCTGTATCCGCCCCGGACGTGT
CAGTCGAAGTTCCCGCGGTCGGCCGGCCGCTCCGGAGGGCGGTGTGAACG
TAAACGTTGCAGCGCCGGCACCGTCTGTGGACGCGAGCGGTCCGTCTGTC
GATCTTCCGTCTATCGGCGACAGTTTGTCTGTATCCGCCCCGGACGTGTC
AGTCGAAGTTCCCGCGGTCGGC
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