mRNA_H-elongata_contig59032.13414.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59032.13414.1
Unique NamemRNA_H-elongata_contig59032.13414.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59032.13414.1 vs. uniprot
Match: D7G4C8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4C8_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 3.780e-72
Identity = 123/154 (79.87%), Postives = 138/154 (89.61%), Query Frame = 1
Query:    4 VLYVVGILYSFLGLAIVADEFFQSSLEAISERLKLTPDVAGATFLAAGSSSPELFTSVADAFGEANSTGTGTIVGSAMFNILVIVALSAAVAGRSGASIHIDWRPVSRDVIFYCLSIVILTLVFLDSEVQWWEGLIMTLSYGIYILFMKYNARI 465
            VLY+ G++Y FLGLAIV DEFFQ+SLE IS+ L+LTPDVAGATFLAAGSS+PELFTS+ADAFGEANSTGTGTIVGSAMFNILVIVALSAAVAG  G SIHIDWRPV RD+IFY  SI +L LVF+DSEV WWEGLIM L+Y +YI+FMKYN+RI
Sbjct:   88 VLYIAGVVYCFLGLAIVCDEFFQTSLEKISDVLRLTPDVAGATFLAAGSSAPELFTSLADAFGEANSTGTGTIVGSAMFNILVIVALSAAVAGSGGRSIHIDWRPVCRDIIFYTFSIAVLGLVFIDSEVMWWEGLIMFLAYIVYIIFMKYNSRI 241          
BLAST of mRNA_H-elongata_contig59032.13414.1 vs. uniprot
Match: D8LLM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM0_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 5.060e-55
Identity = 105/150 (70.00%), Postives = 121/150 (80.67%), Query Frame = 1
Query:   16 VGILYSFLGLAIVADEFFQSSLEAISERLKLTPDVAGATFLAAGSSSPELFTSVADAFGEANSTGTGTIVGSAMFNILVIVALSAAVAGRSGASIHIDWRPVSRDVIFYCLSIVILTLVFLDSEVQWWEGLIMTLSYGIYILFMKYNARI 465
            V IL++F GLAIV DEFFQ+SLE ISE L LTPDVAGATFLAAGSS+PELFTS+AD FG +NS G GTIVGSAMFN+LVIVALSAAVA +SG S  ID R V+RDV FY  SI +L     D E++WWE LIM L+YG+YI+FM YN+RI
Sbjct:   32 VAILFTFNGLAIVCDEFFQASLEKISEVLGLTPDVAGATFLAAGSSAPELFTSIADVFGPSNSIGVGTIVGSAMFNVLVIVALSAAVAVKSGTSGTIDHRVVARDVSFYTCSIFMLVAAASDGEIRWWEALIMVLAYGLYIVFMVYNSRI 181          
BLAST of mRNA_H-elongata_contig59032.13414.1 vs. uniprot
Match: A0A7S2G6T6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G6T6_9STRA)

HSP 1 Score: 166 bits (420), Expect = 6.110e-46
Identity = 93/150 (62.00%), Postives = 118/150 (78.67%), Query Frame = 1
Query:   19 GILYSFLGLAIVADEFFQSSLEAISERLKLTPDVAGATFLAAGSSSPELFTSVADAFGEAN-STGTGTIVGSAMFNILVIVALSAAVAGRSGASIHIDWRPVSRDVIFYCLSIVILTLVFLDSEVQWWEGLIMTLSYGIYILFMKYNARI 465
            GI++ F+G+AIV DE+FQ +LEAISE L L+ DVAGATFLAAGSS+PELFTS++DAF     S G GTIVGSAMFNILVIVALS AVAG+SGAS+ IDWRPV+RDV +Y +SI+++   F D +V   E  IM ++Y  YI+FM +N ++
Sbjct:  133 GIIFIFVGIAIVCDEYFQPALEAISEALDLSADVAGATFLAAGSSAPELFTSLSDAFSVCPASMGIGTIVGSAMFNILVIVALSCAVAGQSGASLLIDWRPVARDVTYYTISILMMAAFFDDGKVTVAEAAIMVVAYFSYIVFMMFNEKV 282          
BLAST of mRNA_H-elongata_contig59032.13414.1 vs. uniprot
Match: A0A7S2JRH5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2JRH5_9DINO)

HSP 1 Score: 146 bits (368), Expect = 5.310e-42
Identity = 82/128 (64.06%), Postives = 94/128 (73.44%), Query Frame = 1
Query:   25 LYSFLGLAIVADEFFQSSLEAISERLKLTPDVAGATFLAAGSSSPELFTSVADAFGEANSTGTGTIVGSAMFNILVIVALSAAVAGRSGASIHIDWRPVSRDVIFYCLSIVILTLVFLDSEVQWWEGL 408
            LY FLG+AI+ DE+F  SLE IS  L L+ DVAGATFLAAGSS+PELFTSVAD FG  N+ G GTIVGSAMFNIL+IVALSAA        + IDWRPV RD  FY  SI +L L F+D  ++WWE L
Sbjct:   34 LYIFLGIAIICDEWFVPSLERISGVLNLSADVAGATFLAAGSSAPELFTSVADTFGPGNNIGIGTIVGSAMFNILIIVALSAAATSER---LSIDWRPVVRDCGFYASSICLLALFFIDGLIEWWESL 158          
BLAST of mRNA_H-elongata_contig59032.13414.1 vs. uniprot
Match: UPI00193ADE51 (sodium/potassium/calcium exchanger Nckx30C-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193ADE51)

HSP 1 Score: 157 bits (397), Expect = 1.320e-41
Identity = 85/155 (54.84%), Postives = 120/155 (77.42%), Query Frame = 1
Query:    1 VVLYVVGILYSFLGLAIVADEFFQSSLEAISERLKLTPDVAGATFLAAGSSSPELFTSVADAFGEANSTGTGTIVGSAMFNILVIVALSAAVAGRSGASIHIDWRPVSRDVIFYCLSIVILTLVFLDSEVQWWEGLIMTLSYGIYILFMKYNARI 465
            V+LY++ IL+ F+GLAI+ D+FF +SLEAIS+RL L+ DVAGATF+AAGSS+PELF S+A A G  +  G GTIVGSA+FN+L+I+AL+AA+AG+    + +DWRP  RD IFY +SIV   +  LD++  +WE L++ + Y +YI+ MK+NAR+
Sbjct:  267 VLLYIIIILFLFIGLAIICDDFFIASLEAISQRLNLSEDVAGATFMAAGSSAPELFISIAGA-GAGSDVGVGTIVGSAVFNLLIIIALTAALAGKV---LCLDWRPFVRDSIFYAMSIVAFIVFSLDTQFTYWESLMLLVLYALYIVVMKFNARL 417          
BLAST of mRNA_H-elongata_contig59032.13414.1 vs. uniprot
Match: A0A2R5GJK9_9STRA (Sodium/potassium/calcium exchanger 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJK9_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.330e-41
Identity = 88/153 (57.52%), Postives = 111/153 (72.55%), Query Frame = 1
Query:   10 YVVGILYSFLGLAIVADEFFQSSLEAISERLKLTPDVAGATFLAAGSSSPELFTSVADAF--GEANSTGTGTIVGSAMFNILVIVALSAAVAGRSGASIHIDWRPVSRDVIFYCLSIVILTLVFLDSEVQWWEGLIMTLSYGIYILFMKYNAR 462
            Y+  +L+ FLGLAIV D++  S+LE ISE L L+ DVAGATFLAAGSS+PELF S+AD        S G GT+VGSA+FNILVI+ LSA +AG   +++H+DWRP++RDV FY +SIV L  V +D E  WWEGLI+   Y +YI FM  NAR
Sbjct:   95 YIAIMLFLFLGLAIVCDDYLVSALERISEALNLSEDVAGATFLAAGSSAPELFVSLADNVISNPPKSVGVGTVVGSAIFNILVIIGLSAMLAG---STLHLDWRPLARDVTFYVVSIVALLGVIIDEEAHWWEGLILLFLYSLYIGFMTVNAR 244          
BLAST of mRNA_H-elongata_contig59032.13414.1 vs. uniprot
Match: A0A7S2H048_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H048_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.380e-41
Identity = 88/155 (56.77%), Postives = 113/155 (72.90%), Query Frame = 1
Query:    7 LYVVGILYSFLGLAIVADEFFQSSLEAISERLKLTPDVAGATFLAAGSSSPELFTSVADAFGEANSTG--TGTIVGSAMFNILVIVALSAAVAGRSGASIHIDWRPVSRDVIFYCLSIVILTLVFLDSEVQWWEGLIMTLSYGIYILFMKYNARI 465
            LY++  +Y F  L IV DE+F  SLE ISE L+L+ DVAGATF+AAGSS+PELF SVAD FG ++ +G   GTIVGSAMFNILVIVA+SAA        I IDW+PV RD  FY ++I+++ ++  DS V W+EGLIM + YG YILFM +N ++
Sbjct:   47 LYLIITVYLFSALGIVCDEWFVPSLEKISEVLQLSSDVAGATFMAAGSSAPELFVSVADTFGPSHGSGYGIGTIVGSAMFNILVIVAMSAACCSDE---IVIDWKPVVRDCFFYSVAILVMIVIISDSVVTWYEGLIMVIMYGCYILFMVFNKKL 198          
BLAST of mRNA_H-elongata_contig59032.13414.1 vs. uniprot
Match: UPI000703FCED (sodium/potassium/calcium exchanger 4 n=1 Tax=Myotis brandtii TaxID=109478 RepID=UPI000703FCED)

HSP 1 Score: 146 bits (369), Expect = 7.250e-41
Identity = 78/155 (50.32%), Postives = 104/155 (67.10%), Query Frame = 1
Query:    1 VVLYVVGILYSFLGLAIVADEFFQSSLEAISERLKLTPDVAGATFLAAGSSSPELFTSVADAFGEANSTGTGTIVGSAMFNILVIVALSAAVAGRSGASIHIDWRPVSRDVIFYCLSIVILTLVFLDSEVQWWEGLIMTLSYGIYILFMKYNARI 465
            V+L+++G LY F  LAIV D+FF  SLE I E+L L+ DVAGATF+AAGSS+PELF S+   F      G GTIVGSA+FNIL I+ +    AG+    + + W  V RD ++Y LS+++L     D E+ WWEGL++ + YG YIL MKYN +I
Sbjct:   58 VLLHILGALYMFYALAIVCDDFFVPSLEKICEKLHLSEDVAGATFMAAGSSTPELFASIIGVFITHGDVGVGTIVGSAVFNILCIIGVCGLFAGQV---VQLTWWAVCRDSVYYTLSVIVLIAFIYDEEIVWWEGLVLIILYGFYILIMKYNVKI 209          
BLAST of mRNA_H-elongata_contig59032.13414.1 vs. uniprot
Match: E4WSP3_OIKDI (Na_Ca_ex domain-containing protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4WSP3_OIKDI)

HSP 1 Score: 146 bits (369), Expect = 7.440e-41
Identity = 82/152 (53.95%), Postives = 111/152 (73.03%), Query Frame = 1
Query:   10 YVVGILYSFLGLAIVADEFFQSSLEAISERLKLTPDVAGATFLAAGSSSPELFTSVADAFGEANSTGTGTIVGSAMFNILVIVALSAAVAGRSGASIHIDWRPVSRDVIFYCLSIVILTLVFLDSEVQWWEGLIMTLSYGIYILFMKYNARI 465
            Y V IL+ F+ +AI+ D+FF  SLEAISE+L L+ DVAGATF+AAGSS+PELFTS+     E +  G GTIVGSA+FN+LVIVALS+A+AG++ A   +DWRP++RD  +Y LSI  L     D  + WWE LI+T+ Y IY++ M +N ++
Sbjct:  103 YCVAILWLFVAVAIICDDFFVPSLEAISEKLDLSEDVAGATFMAAGSSAPELFTSLLGVTKETD-VGVGTIVGSAVFNLLVIVALSSALAGKTLA---LDWRPLARDSTYYALSIGFLVAFAWDGYITWWEALILTMLYVIYVVIMTFNQQL 250          
BLAST of mRNA_H-elongata_contig59032.13414.1 vs. uniprot
Match: V8P132_OPHHA (Sodium/potassium/calcium exchanger 2 (Fragment) n=1 Tax=Ophiophagus hannah TaxID=8665 RepID=V8P132_OPHHA)

HSP 1 Score: 145 bits (365), Expect = 8.080e-40
Identity = 74/155 (47.74%), Postives = 112/155 (72.26%), Query Frame = 1
Query:    1 VVLYVVGILYSFLGLAIVADEFFQSSLEAISERLKLTPDVAGATFLAAGSSSPELFTSVADAFGEANSTGTGTIVGSAMFNILVIVALSAAVAGRSGASIHIDWRPVSRDVIFYCLSIVILTLVFLDSEVQWWEGLIMTLSYGIYILFMKYNARI 465
            V+L+++G++Y F+ LAIV DEFF  SL  I+E+LK++ DVAGATF+AAG S+PELFTS+   F   ++ G GTIVGSA+FNIL ++ + A  + +    +H+ W P+ RDV FY L +++L + FLD+ ++WWE LI+  +Y  Y+ FMK+N ++
Sbjct:   86 VLLHIIGMIYMFVALAIVCDEFFVPSLTVITEKLKISDDVAGATFMAAGGSAPELFTSLIGIFISHSNVGIGTIVGSAVFNILFVIGMCALFSKQI---LHLTWWPLFRDVSFYILDLILLIIFFLDNFIRWWESLILLSAYISYVTFMKFNVQV 237          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59032.13414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4C8_ECTSI3.780e-7279.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LLM0_ECTSI5.060e-5570.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2G6T6_9STRA6.110e-4662.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2JRH5_9DINO5.310e-4264.06Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
UPI00193ADE511.320e-4154.84sodium/potassium/calcium exchanger Nckx30C-like n=... [more]
A0A2R5GJK9_9STRA1.330e-4157.52Sodium/potassium/calcium exchanger 2 n=1 Tax=Honda... [more]
A0A7S2H048_9STRA1.380e-4156.77Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI000703FCED7.250e-4150.32sodium/potassium/calcium exchanger 4 n=1 Tax=Myoti... [more]
E4WSP3_OIKDI7.440e-4153.95Na_Ca_ex domain-containing protein n=1 Tax=Oikople... [more]
V8P132_OPHHA8.080e-4047.74Sodium/potassium/calcium exchanger 2 (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59032contigH-elongata_contig59032:1375..1839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.0
Seed ortholog evalue2.9e-60
Seed eggNOG ortholog2880.D7G4C8
KEGG koko:K13751,ko:K13752,ko:K13753
KEGG TC2.A.19.4,2.A.19.4.5,2.A.19.4.6
KEGG Pathwayko04740,map04740
EggNOG free text desc.calcium, potassium:sodium antiporter activity
EggNOG OGsCOG0530@1,KOG1307@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSodium/potassium/calcium exchanger
Ec32 orthologEc-00_007310.1
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.2672484-CDS-H-elongata_contig59032:1374..18391622930958.2672484-CDS-H-elongata_contig59032:1374..1839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59032 1375..1839 -
1691679640.4910235-CDS-H-elongata_contig59032:1374..18391691679640.4910235-CDS-H-elongata_contig59032:1374..1839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59032 1375..1839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59032.13414.1prot_H-elongata_contig59032.13414.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59032 1375..1839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59032.13414.1

>prot_H-elongata_contig59032.13414.1 ID=prot_H-elongata_contig59032.13414.1|Name=mRNA_H-elongata_contig59032.13414.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp
VVLYVVGILYSFLGLAIVADEFFQSSLEAISERLKLTPDVAGATFLAAGS
SSPELFTSVADAFGEANSTGTGTIVGSAMFNILVIVALSAAVAGRSGASI
HIDWRPVSRDVIFYCLSIVILTLVFLDSEVQWWEGLIMTLSYGIYILFMK
YNARI
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mRNA from alignment at H-elongata_contig59032:1375..1839-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59032.13414.1 ID=mRNA_H-elongata_contig59032.13414.1|Name=mRNA_H-elongata_contig59032.13414.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=465bp|location=Sequence derived from alignment at H-elongata_contig59032:1375..1839- (Himanthalia elongata Himel1 dioecious)
GTAGTTTTGTACGTCGTCGGTATCTTGTACAGTTTTCTGGGGCTTGCGAT TGTGGCCGACGAGTTTTTCCAGTCGTCCCTCGAGGCTATATCGGAGAGGC TGAAATTGACGCCAGACGTGGCGGGAGCTACGTTTCTCGCCGCCGGGTCG TCCTCCCCGGAGCTTTTCACGTCGGTTGCCGACGCTTTCGGCGAAGCCAA TTCAACTGGGACAGGGACAATCGTCGGGTCGGCGATGTTCAACATCCTTG TCATTGTTGCCCTCTCGGCCGCGGTGGCCGGCAGGAGCGGTGCGTCGATC CACATCGATTGGCGACCGGTGTCACGAGACGTGATCTTCTACTGCTTATC CATAGTGATCCTGACGCTGGTCTTCCTCGACAGCGAGGTGCAGTGGTGGG AAGGCCTGATCATGACCCTCTCCTACGGCATATACATCTTGTTTATGAAG TACAACGCACGCATC
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Coding sequence (CDS) from alignment at H-elongata_contig59032:1375..1839-

>mRNA_H-elongata_contig59032.13414.1 ID=mRNA_H-elongata_contig59032.13414.1|Name=mRNA_H-elongata_contig59032.13414.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig59032:1375..1839- (Himanthalia elongata Himel1 dioecious)
GTAGTTTTGTACGTCGTCGGTATCTTGTACAGTTTTCTGGGGCTTGCGAT
TGTGGCCGACGAGTTTTTCCAGTCGTCCCTCGAGGCTATATCGGAGAGGC
TGAAATTGACGCCAGACGTGGCGGGAGCTACGTTTCTCGCCGCCGGGTCG
TCCTCCCCGGAGCTTTTCACGTCGGTTGCCGACGCTTTCGGCGAAGCCAA
TTCAACTGGGACAGGGACAATCGTCGGGTCGGCGATGTTCAACATCCTTG
TCATTGTTGCCCTCTCGGCCGCGGTGGCCGGCAGGAGCGGTGCGTCGATC
CACATCGATTGGCGACCGGTGTCACGAGACGTGATCTTCTACTGCTTATC
CATAGTGATCCTGACGCTGGTCTTCCTCGACAGCGAGGTGCAGTGGTGGG
AAGGCCTGATCATGACCCTCTCCTACGGCATATACATCTTGTTTATGAAG
TACAACGCACGCATCGTAGTTTTGTACGTCGTCGGTATCTTGTACAGTTT
TCTGGGGCTTGCGATTGTGGCCGACGAGTTTTTCCAGTCGTCCCTCGAGG
CTATATCGGAGAGGCTGAAATTGACGCCAGACGTGGCGGGAGCTACGTTT
CTCGCCGCCGGGTCGTCCTCCCCGGAGCTTTTCACGTCGGTTGCCGACGC
TTTCGGCGAAGCCAATTCAACTGGGACAGGGACAATCGTCGGGTCGGCGA
TGTTCAACATCCTTGTCATTGTTGCCCTCTCGGCCGCGGTGGCCGGCAGG
AGCGGTGCGTCGATCCACATCGATTGGCGACCGGTGTCACGAGACGTGAT
CTTCTACTGCTTATCCATAGTGATCCTGACGCTGGTCTTCCTCGACAGCG
AGGTGCAGTGGTGGGAAGGCCTGATCATGACCCTCTCCTACGGCATATAC
ATCTTGTTTATGAAGTACAACGCACGCATC
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