mRNA_H-elongata_contig59024.13413.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59024.13413.1 vs. uniprot
Match: D8LMD3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD3_ECTSI) HSP 1 Score: 201 bits (512), Expect = 3.220e-58 Identity = 104/123 (84.55%), Postives = 114/123 (92.68%), Query Frame = 1
Query: 28 EALAAFPLVPAGLFHSSLLVGIITSLGLPAAMTQAVTATIAVHPLAIVGITGVIVNALNLMPIGSLDGGRIAMSTFGRKAGGVLGTLTLLLQAVSAVFNNYSLQLFWGLLVILFQRGQDLPAK 396
EAL FPLVPAGLFHSSLLVGI+TS+GLP M AV +T+ +HPLAIVG+TG+IVNALNLMPIGSLDGGRIAMS FGRKAGGVLGT+TLLLQA+S+VFNNYSLQLFWGLLVILFQRGQDLPAK
Sbjct: 630 EALEMFPLVPAGLFHSSLLVGIMTSIGLPNVMGLAVASTVPIHPLAIVGVTGIIVNALNLMPIGSLDGGRIAMSAFGRKAGGVLGTVTLLLQAISSVFNNYSLQLFWGLLVILFQRGQDLPAK 752
BLAST of mRNA_H-elongata_contig59024.13413.1 vs. uniprot
Match: A0A835ZIQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIQ3_9STRA) HSP 1 Score: 176 bits (445), Expect = 2.510e-51 Identity = 87/122 (71.31%), Postives = 105/122 (86.07%), Query Frame = 1
Query: 28 EALAAFPLVPAGLFHSSLLVGIITSLGLPAAMTQAVTATIAVHPLAIVGITGVIVNALNLMPIGSLDGGRIAMSTFGRKAGGVLGTLTLLLQAVSAVFNNYSLQLFWGLLVILFQRGQDLPA 393
+ALAAFP+VPA LFHSS ++G ITS+ LP AM QA++ + +HPLA++G TGVIVNALNLMP+G LDGGR+A + FGR+ VLGTLTLLLQA SA+FNNYSLQLFWGL+VI+FQRGQDLPA
Sbjct: 230 DALAAFPVVPAALFHSSAIIGTITSIALPQAMLQALSTPVPLHPLAVIGFTGVIVNALNLMPVGRLDGGRLAAAGFGRRTAAVLGTLTLLLQAASAIFNNYSLQLFWGLVVIIFQRGQDLPA 351
BLAST of mRNA_H-elongata_contig59024.13413.1 vs. uniprot
Match: A0A835ZNX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNX7_9STRA) HSP 1 Score: 156 bits (395), Expect = 2.060e-44 Identity = 84/139 (60.43%), Postives = 102/139 (73.38%), Query Frame = 1
Query: 28 EALAAFPLVPAGLFHSSLLVGIITSLGLPAAMTQAVTATIAVHPLAIVGITGVIVNALNLMPIGSLDGGRIAMSTFGRKAGGVLGTLTLLLQ-----------------AVSAVFNNYSLQLFWGLLVILFQRGQDLPA 393
+ALAAFP+VPA LFHSS +G ITS+ LP AM QA++ + +HPLA++G+ GVIVNALNLMP+G LDG R+A + FGR+ VLGTLTLLLQ A SA+FNN+SLQLFWGL VI+FQRGQDLPA
Sbjct: 144 DALAAFPVVPAALFHSSATIGTITSIALPQAMLQALSTPVPLHPLAVIGLMGVIVNALNLMPVGRLDGERLAAAGFGRRTAAVLGTLTLLLQIVRHPQRTAAIITHFLDAASAIFNNHSLQLFWGLAVIIFQRGQDLPA 282
BLAST of mRNA_H-elongata_contig59024.13413.1 vs. uniprot
Match: A0A7S2G2S1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2S1_9STRA) HSP 1 Score: 119 bits (299), Expect = 9.550e-32 Identity = 58/124 (46.77%), Postives = 88/124 (70.97%), Query Frame = 1
Query: 25 QEALAAFPLVPAGLFHSSLLVGIITSLGLPAAMTQAVTATIAVHPLAIVGITGVIVNALNLMPIGSLDGGRIAMSTFGRKAGGVLGTLTLLLQAVSAVFNNYSLQLFWGLLVILFQRGQDLPAK 396
QE ++ FP++P F SS LVG ITS+ LP+ M + TA ++VHPL +VG+TG++VNALN MP+G +DGGR + GR + ++G++ LLLQA+S + + +QLFWG+ ++ FQR Q++P
Sbjct: 6 QEMVSLFPVLPGSTFSSSALVGGITSVLLPSVMGLSDTAAVSVHPLTVVGLTGLLVNALNFMPVGRIDGGRASTCVLGRPSATIIGSVILLLQALSGLAGDSPIQLFWGITILCFQRSQEIPCN 129
BLAST of mRNA_H-elongata_contig59024.13413.1 vs. uniprot
Match: A0A2V3J2Y1_9FLOR (Putative zinc metalloprotease EGY2, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2Y1_9FLOR) HSP 1 Score: 119 bits (298), Expect = 8.080e-29 Identity = 64/128 (50.00%), Postives = 83/128 (64.84%), Query Frame = 1
Query: 13 LDGEQEALAAFPLVPAGLFHSSLLVGIITSLGLPAAMTQAVTATIAVHPLAIVGITGVIVNALNLMPIGSLDGGRIAMSTFGRKAGGVLGTLTLLLQAVSAVFNNYSLQLFWGLLVILFQRGQDLPAK 396
+ G E FP VP+ LFH+S+LVG + + LP + + ATIAVHPL ++G TG++VNALNLMPIG LDGGRI + +GR G LTL LQAVS++ N L LFWGL+ + QR D P +
Sbjct: 408 ITGSGEVANWFPQVPSNLFHASVLVGAVADIILPPGLREQ--ATIAVHPLTVIGYTGLLVNALNLMPIGRLDGGRIVQALYGRAIAGRASALTLFLQAVSSLVGNSPLLLFWGLVCVFLQRESDYPCQ 533
BLAST of mRNA_H-elongata_contig59024.13413.1 vs. uniprot
Match: R7Q4W8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4W8_CHOCR) HSP 1 Score: 115 bits (287), Expect = 2.460e-27 Identity = 61/118 (51.69%), Postives = 79/118 (66.95%), Query Frame = 1
Query: 43 FPLVPAGLFHSSLLVGIITSLGLPAAMTQAVTATIAVHPLAIVGITGVIVNALNLMPIGSLDGGRIAMSTFGRKAGGVLGTLTLLLQAVSAVFNNYSLQLFWGLLVILFQRGQDLPAK 396
FP VP+ LFH+S+LVG + + LPA + + ATIAVHPLA+VG TG++ NALNLMPIG LDGGRI + +GR +TLLLQ S++ N L LFWGL+ + QR D P +
Sbjct: 398 FPQVPSALFHASILVGSLADIILPAGLREQ--ATIAVHPLAVVGYTGLLANALNLMPIGRLDGGRIMQALYGRAVASRATAITLLLQGFSSLLGNSPLLLFWGLVAVFLQRESDYPCR 513
BLAST of mRNA_H-elongata_contig59024.13413.1 vs. uniprot
Match: A0A7S1NZL4_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1NZL4_9ALVE) HSP 1 Score: 111 bits (277), Expect = 8.040e-26 Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 1
Query: 19 GEQEALAAFPLVPAGLFHSSLLVGIITSLGLPAAMTQAVTATIAVHPLAIVGITGVIVNALNLMPIGSLDGGRIAMSTFGRKAGGVLGTLTLLLQAVSAVFNNYSLQLFWGLLVILFQRGQDLPAK 396
G EA+A++P++PA LFH+S L+G+IT + + +T + VHPL + G G I+NALN MPIG LDGGR A S A +L +T L QA S +F+ LQLFWG+LV++FQ ++PAK
Sbjct: 581 GTNEAIASWPVLPAALFHNSFLLGLITDFLDKGLLAEKITTPMPVHPLVVSGFLGSIINALNFMPIGRLDGGRAATSALAAGAP-LLSIVTQLAQAASGLFSGNELQLFWGILVVIFQNSPEVPAK 705
BLAST of mRNA_H-elongata_contig59024.13413.1 vs. uniprot
Match: A0A0G4GLI0_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GLI0_VITBC) HSP 1 Score: 111 bits (277), Expect = 8.370e-26 Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 1
Query: 19 GEQEALAAFPLVPAGLFHSSLLVGIITSLGLPAAMTQAVTATIAVHPLAIVGITGVIVNALNLMPIGSLDGGRIAMSTFGRKAGGVLGTLTLLLQAVSAVFNNYSLQLFWGLLVILFQRGQDLPAK 396
G EA+A++P++PA LFH+S L+G+IT + + +T + VHPL + G G I+NALN MPIG LDGGR A S A +L +T L QA S +F+ LQLFWG+LV++FQ ++PAK
Sbjct: 1004 GTNEAIASWPVLPAALFHNSFLLGLITDFLDKGLLAEKITTPMPVHPLVVSGFLGSIINALNFMPIGRLDGGRAATSALAAGAP-LLSIVTQLAQAASGLFSGNELQLFWGILVVIFQNSPEVPAK 1128
BLAST of mRNA_H-elongata_contig59024.13413.1 vs. uniprot
Match: M2WYG4_GALSU (Peptidase, M50 family protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WYG4_GALSU) HSP 1 Score: 110 bits (276), Expect = 1.000e-25 Identity = 60/118 (50.85%), Postives = 77/118 (65.25%), Query Frame = 1
Query: 43 FPLVPAGLFHSSLLVGIITSLGLPAAMTQAVTATIAVHPLAIVGITGVIVNALNLMPIGSLDGGRIAMSTFGRKAGGVLGTLTLLLQAVSAVFNNYSLQLFWGLLVILFQRGQDLPAK 396
FP VP+ LF +S+LVG + + P T+AVHPL +VG TG+++NALNL+PIG LDGGRI FGR +G +TLLLQ + AV N L LFWG+ V+LFQR DLP +
Sbjct: 475 FPQVPSLLFRASMLVGSLAKIIAP--YLDLSHNTVAVHPLTVVGYTGLLINALNLLPIGRLDGGRIVQCIFGRSTASRVGGITLLLQGLGAVLGNSPLLLFWGIFVVLFQREMDLPCE 590
BLAST of mRNA_H-elongata_contig59024.13413.1 vs. uniprot
Match: A0A5J4Z2W4_PORPP (Putative zinc metalloprotease EGY1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W4_PORPP) HSP 1 Score: 110 bits (276), Expect = 1.010e-25 Identity = 58/123 (47.15%), Postives = 77/123 (62.60%), Query Frame = 1
Query: 28 EALAAFPLVPAGLFHSSLLVGIITSLGLPAAMTQAVTATIAVHPLAIVGITGVIVNALNLMPIGSLDGGRIAMSTFGRKAGGVLGTLTLLLQAVSAVFNNYSLQLFWGLLVILFQRGQDLPAK 396
EA A+ P +P LFHSSLL+ S LP + Q +TI+VHPL +VG TG ++NALNL+P+G LDGGRI S GR G+ T+ L LQ S++ SL L WGL+ I QR ++P +
Sbjct: 471 EAAASLPTIPTALFHSSLLLNTFASSLLPDGLLQQ--STISVHPLVVVGYTGALINALNLIPVGRLDGGRIVQSVLGRARAGIFSTVALALQGFSSILGGNSLLLIWGLITIFLQREPEIPCQ 591 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59024.13413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59024.13413.1 >prot_H-elongata_contig59024.13413.1 ID=prot_H-elongata_contig59024.13413.1|Name=mRNA_H-elongata_contig59024.13413.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp MPDNLDGEQEALAAFPLVPAGLFHSSLLVGIITSLGLPAAMTQAVTATIAback to top mRNA from alignment at H-elongata_contig59024:1225..3053- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59024.13413.1 ID=mRNA_H-elongata_contig59024.13413.1|Name=mRNA_H-elongata_contig59024.13413.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1829bp|location=Sequence derived from alignment at H-elongata_contig59024:1225..3053- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59024:1225..3053- >mRNA_H-elongata_contig59024.13413.1 ID=mRNA_H-elongata_contig59024.13413.1|Name=mRNA_H-elongata_contig59024.13413.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig59024:1225..3053- (Himanthalia elongata Himel1 dioecious)back to top |