mRNA_H-elongata_contig59008.13410.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59008.13410.1
Unique NamemRNA_H-elongata_contig59008.13410.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59008.13410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59008contigH-elongata_contig59008:239..574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.9433763-CDS-H-elongata_contig59008:238..5741622930957.9433763-CDS-H-elongata_contig59008:238..574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59008 239..574 +
1691679640.385556-CDS-H-elongata_contig59008:238..5741691679640.385556-CDS-H-elongata_contig59008:238..574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59008 239..574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59008.13410.1prot_H-elongata_contig59008.13410.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59008 239..574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59008.13410.1

>prot_H-elongata_contig59008.13410.1 ID=prot_H-elongata_contig59008.13410.1|Name=mRNA_H-elongata_contig59008.13410.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
PLSTRDGFVLRASFPTKTTSSLYTILSPPHTQTYRHPRDKLESHARNTEH
ILTTYTQLTLSRHTQDTSKTHSRIVNIYTPNTKNIHTHTHRNACLHECML
GNTHTHTHIPP*
back to top

mRNA from alignment at H-elongata_contig59008:239..574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59008.13410.1 ID=mRNA_H-elongata_contig59008.13410.1|Name=mRNA_H-elongata_contig59008.13410.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at H-elongata_contig59008:239..574+ (Himanthalia elongata Himel1 dioecious)
CCCCTTTCCACTCGAGACGGCTTCGTTCTTCGGGCCTCTTTCCCCACCAA
GACCACGTCCTCCCTCTACACGATTCTGTCCCCTCCACACACACAGACAT
ACAGACATCCCCGTGACAAACTCGAGTCACATGCAAGAAACACCGAACAC
ATACTTACGACATATACTCAACTAACTCTCTCAAGACATACCCAAGACAC
GTCGAAGACACACTCAAGAATAGTCAACATATATACACCAAACACAAAAA
ACATACACACACACACACACAGAAACGCCTGTCTACATGAATGCATGTTA
GGAAACACACACACACACACACACATCCCCCCCTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig59008:239..574+

>mRNA_H-elongata_contig59008.13410.1 ID=mRNA_H-elongata_contig59008.13410.1|Name=mRNA_H-elongata_contig59008.13410.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig59008:239..574+ (Himanthalia elongata Himel1 dioecious)
CCCCTTTCCACTCGAGACGGCTTCGTTCTTCGGGCCTCTTTCCCCACCAA
GACCACGTCCTCCCTCTACACGATTCTGTCCCCTCCACACACACAGACAT
ACAGACATCCCCGTGACAAACTCGAGTCACATGCAAGAAACACCGAACAC
ATACTTACGACATATACTCAACTAACTCTCTCAAGACATACCCAAGACAC
GTCGAAGACACACTCAAGAATAGTCAACATATATACACCAAACACAAAAA
ACATACACACACACACACACAGAAACGCCTGTCTACATGAATGCATGTTA
GGAAACACACACACACACACACACATCCCCCCCTAGCCCCTTTCCACTCG
AGACGGCTTCGTTCTTCGGGCCTCTTTCCCCACCAAGACCACGTCCTCCC
TCTACACGATTCTGTCCCCTCCACACACACAGACATACAGACATCCCCGT
GACAAACTCGAGTCACATGCAAGAAACACCGAACACATACTTACGACATA
TACTCAACTAACTCTCTCAAGACATACCCAAGACACGTCGAAGACACACT
CAAGAATAGTCAACATATATACACCAAACACAAAAAACATACACACACAC
ACACACAGAAACGCCTGTCTACATGAATGCATGTTAGGAAACACACACAC
ACACACACACATCCCCCCCTAG
back to top