mRNA_H-elongata_contig59005.13409.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59005.13409.1
Unique NamemRNA_H-elongata_contig59005.13409.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59005.13409.1 vs. uniprot
Match: D7FRV6_ECTSI (Complex1_LYR_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRV6_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.670e-32
Identity = 57/78 (73.08%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:    1 MTQPTRTAVLGLYRELRRQGARLMDYNNRDYALRRTRKGFEMAQGFPPEEAEVAFEKGRQQLEVIRRQATISHLYPHQ 234
            M QP+RTAVLGLY+ LRRQGA LMDYN R+YALRR R+GFE+A+GF PEEAE AF+KG+++LE++RRQA IS LYPHQ
Sbjct:    1 MAQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAPEEAEAAFKKGQRELEIVRRQAAISQLYPHQ 78
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BLAST of mRNA_H-elongata_contig59005.13409.1 vs. uniprot
Match: A0A0G4IIG7_PLABS (Complex1_LYR_dom domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IIG7_PLABS)

HSP 1 Score: 65.5 bits (158), Expect = 2.860e-12
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    4 TQPTRTAVLGLYRELRRQGARLMDYNNRDYALRRTRKGFEMAQGFPPEEAEVAFEKGRQQLEVIRRQATISHLYPH 231
            T PTR+A L LY+ +RR G +  D+N R+Y +RR R+ FE  +     +A   +EKG + L+V+RRQ+T++ +Y H
Sbjct:    4 TPPTRSACLALYKNVRRAGLQFKDFNFREYVVRRARERFEAGRAATGADAARLYEKGIEDLQVVRRQSTLNRMYAH 79
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BLAST of mRNA_H-elongata_contig59005.13409.1 vs. uniprot
Match: W7TGY8_9STRA (Complex 1 LYR protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGY8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.850e-12
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:   10 PTRTAVLGLYRELRRQGARLMDYNNRDYALRRTRKGFEMAQGFPPEEAEVAFEKGRQQLEVIRRQATISHLYP 228
            P+R  VLGL+R L RQ  RL DYN R YA RR   GF+  +    EEA   +  G + LE+++RQA ISHLYP
Sbjct:   19 PSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYP 91
[Close]
BLAST of mRNA_H-elongata_contig59005.13409.1 vs. uniprot
Match: A0A2C9KVK4_BIOGL (Complex1_LYR_dom domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9KVK4_BIOGL)

HSP 1 Score: 61.6 bits (148), Expect = 1.140e-10
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    1 MTQPTRTAVLGLYRELRRQGARLMDYNNRDYALRRTRKGFEMAQGFPP-EEAEVAFEKGRQQLEVIRRQATISHLY 225
            M  PTRT VL LY+++ R+G ++ DYN R YALRRTR  F+  +     E+ ++  +K  + LE+++RQAT+S LY
Sbjct:    7 MAAPTRTTVLTLYKQILREGKKVTDYNFRMYALRRTRDAFKENKNVTDLEQMQLLTQKAIKNLEMLKRQATVSQLY 82
[Close]
BLAST of mRNA_H-elongata_contig59005.13409.1 vs. uniprot
Match: UPI00035A1C09 (LYR motif-containing protein 4 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035A1C09)

HSP 1 Score: 58.2 bits (139), Expect = 2.390e-9
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:    1 MTQPTRTAVLGLYRELRRQGARLMDYNNRDYALRRTRKGFEMAQGFPPE-EAEVAFEKGRQQLEVIRRQATISHLY 225
            M   TRT VL LY+EL ++  R+ DYN R+YALRRTR  F+  +      + +    K ++ LE++RRQAT+S L+
Sbjct:    1 MAASTRTKVLSLYKELLKESKRVTDYNFRNYALRRTRDAFKENKAITDAGQIQALVVKAQENLEMLRRQATVSQLF 76
[Close]
BLAST of mRNA_H-elongata_contig59005.13409.1 vs. uniprot
Match: A0A8H7BM76_9FUNG (Complex1_LYR_dom domain-containing protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BM76_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 8.980e-9
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:    4 TQPTRTAVLGLYRELRRQGARLMDYNNRDYALRRTRKGFEM-AQGFPPEEAEVAFEKGRQQLEVIRRQATISHLY 225
            T  TR  VL LYR+  R G +   YN RDYALRR+R  F   A    P +     EK +++L++++RQA+IS LY
Sbjct:    3 TPATRAQVLALYRQFFRHGNKFASYNFRDYALRRSRDAFRANAAETDPAKIAACIEKAQKELDILKRQASISTLY 77
[Close]
BLAST of mRNA_H-elongata_contig59005.13409.1 vs. uniprot
Match: UPI0008FD5861 (LYR motif-containing protein 4 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FD5861)

HSP 1 Score: 56.6 bits (135), Expect = 9.410e-9
Identity = 35/73 (47.95%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   10 PTRTAVLGLYRELRRQGARLMDYNNRDYALRRTRKGFEMAQGFP-PEEAEVAFEKGRQQLEVIRRQATISHLY 225
            P+R+ VL L R L R      DYN R+Y  RRT  GF + Q    PE+  VAFE+G+ QLEV +RQA +  LY
Sbjct:    5 PSRSEVLHLCRSLLRVARVFSDYNIREYTKRRTVDGFRLNQSLTDPEKVYVAFEEGKAQLEVAKRQAAVYSLY 77
[Close]
BLAST of mRNA_H-elongata_contig59005.13409.1 vs. uniprot
Match: A0A0C2GDP2_9BILA (Complex 1 protein (Fragment) n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2GDP2_9BILA)

HSP 1 Score: 57.0 bits (136), Expect = 1.050e-8
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:    7 QPTRTAVLGLYRELRRQGARLMDYNNRDYALRRTRKGFEMAQGFP-PEEAEVAFEKGRQQLEVIRRQATISHLYPH 231
            Q  ++  + LY++L R+ A+   YN R +A RR R+ FE  +G   P   +   +KG++QLEVIRRQ  IS LYPH
Sbjct:    4 QVAKSVWVNLYKQLEREAAKFPQYNIRVFAQRRIREHFEANRGVTDPAVQKELLKKGKEQLEVIRRQVVISQLYPH 79
[Close]
BLAST of mRNA_H-elongata_contig59005.13409.1 vs. uniprot
Match: A0A8J5XP77_DIALT (Complex1_LYR_dom domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XP77_DIALT)

HSP 1 Score: 55.5 bits (132), Expect = 2.440e-8
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   16 RTAVLGLYRELRRQGARLMDYNNRDYALRRTRKGFEMAQGF--PPEEAEVAFEKGRQQLEVIRRQATISHLYP 228
            RT VL L+++L R       YN R+YALRR R GF    G   P + AE+  E G +QLEV+R+QA IS LYP
Sbjct:    4 RTQVLALFKKLMRASRSFTHYNFREYALRRVRLGFREKAGVSDPAQIAELVGE-GSKQLEVVRKQALISQLYP 75
[Close]
BLAST of mRNA_H-elongata_contig59005.13409.1 vs. uniprot
Match: A0A3S0ZHP3_ELYCH (Complex1_LYR_dom domain-containing protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZHP3_ELYCH)

HSP 1 Score: 55.5 bits (132), Expect = 2.610e-8
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:    1 MTQPTRTAVLGLYRELRRQGARLMDYNNRDYALRRTRKGFEMAQGFPPE-EAEVAFEKGRQQLEVIRRQATISHLY 225
            M  P R  VL LY+ L R+  ++ DYN R YA+RRT+  F+  +        +   +KGR+ LEV++RQA +S LY
Sbjct:    1 MAAPVRQTVLTLYKSLLRESGKITDYNFRLYAIRRTQDAFKENKAVSDTARVQALLQKGRENLEVLKRQAVLSQLY 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59005.13409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRV6_ECTSI1.670e-3273.08Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A0G4IIG7_PLABS2.860e-1242.11Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
W7TGY8_9STRA3.850e-1250.68Complex 1 LYR protein n=1 Tax=Nannochloropsis gadi... [more]
A0A2C9KVK4_BIOGL1.140e-1044.74Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
UPI00035A1C092.390e-943.42LYR motif-containing protein 4 n=1 Tax=Aplysia cal... [more]
A0A8H7BM76_9FUNG8.980e-944.00Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
UPI0008FD58619.410e-947.95LYR motif-containing protein 4 n=1 Tax=Tarenaya ha... [more]
A0A0C2GDP2_9BILA1.050e-843.42Complex 1 protein (Fragment) n=1 Tax=Ancylostoma d... [more]
A0A8J5XP77_DIALT2.440e-849.32Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A3S0ZHP3_ELYCH2.610e-840.79Complex1_LYR_dom domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59005contigH-elongata_contig59005:1517..3459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue2.2e-24
Seed eggNOG ortholog2880.D7FRV6
Preferred nameLYRM4
KEGG koko:K22069
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016043,GO:0016226,GO:0016604,GO:0019866,GO:0019898,GO:0022607,GO:0031090,GO:0031163,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044455,GO:0044464,GO:0044571,GO:0051186,GO:0070013,GO:0071840,GO:1990221
EggNOG free text desc.metallo-sulfur cluster assembly
EggNOG OGsKOG3801@1,KOG3801@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-23_004100.1
Exons2
Model size234
Cds size234
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.873601-CDS-H-elongata_contig59005:1516..15881622930957.873601-CDS-H-elongata_contig59005:1516..1588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59005 1517..1588 +
1691679640.363491-CDS-H-elongata_contig59005:1516..15881691679640.363491-CDS-H-elongata_contig59005:1516..1588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59005 1517..1588 +
1622930957.8905966-CDS-H-elongata_contig59005:3297..34591622930957.8905966-CDS-H-elongata_contig59005:3297..3459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59005 3298..3459 +
1691679640.3750005-CDS-H-elongata_contig59005:3297..34591691679640.3750005-CDS-H-elongata_contig59005:3297..3459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59005 3298..3459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59005.13409.1prot_H-elongata_contig59005.13409.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59005 1517..3459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59005.13409.1

>prot_H-elongata_contig59005.13409.1 ID=prot_H-elongata_contig59005.13409.1|Name=mRNA_H-elongata_contig59005.13409.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MTQPTRTAVLGLYRELRRQGARLMDYNNRDYALRRTRKGFEMAQGFPPEE
AEVAFEKGRQQLEVIRRQATISHLYPHQ
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mRNA from alignment at H-elongata_contig59005:1517..3459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59005.13409.1 ID=mRNA_H-elongata_contig59005.13409.1|Name=mRNA_H-elongata_contig59005.13409.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1943bp|location=Sequence derived from alignment at H-elongata_contig59005:1517..3459+ (Himanthalia elongata Himel1 dioecious)
ATGACGCAACCCACGCGAACAGCAGTACTTGGGCTATACCGGGAACTTCG
CCGTCAGGGTGCTCGTCTAATGGTAAGTCGATGGAGAGATGGGAGTATTT
TGTGCGCACTAAAATAGTTTTATATTTTATTCGCGTCCTGATTTGATATC
GTTCTGGTCCACTTTTACTCCAAGCTGTCTCCGCGCAAACTATTTTATGT
GCCTGAAGATGCTGAGGCCTGGCTCATGCCTCAGAAACAACCGTGATGAT
TGCTTACTTATTTCCAGAGGCAAAGATCACCGTACACAGGAGTATATTAC
TTGTGTGGACCTTGGGAGGCTTACGAACGTTGGCGAAGCCGCTGTTTCTC
TAGGAGACTTCTTACATCCAGTACCGTAGCGCACCCTACTCTCTTCCCAA
AGCCTACCGCCTCTGCAACCGTCATACCCACTCTAGTCTACCCATAGTGG
GTGTGGGAAAATATAGGCGTACAATAATTGGTCCATGGGGTTACCTGAAT
AGGCTGCATCCGTTACTCAAGCTAACATGAGAAATATTGGCTCAGTGCCG
GCGGACTCTCGGTAGTAAACGCCATTGGTACACCTGCTGAAATCGGGATT
GGCCCGATGGCGGCTGACGGTAGAGATGGACGGCGTCCCGGAAAACGGGA
GGATCGAGAGGATCCCAGGAGTAAGCACCAGATTCAGCCTGGGTTCGGAG
AATGAGCAGGCTGACGCGGGACGGTACTGCTGAACCCGTCTCGCGAGGCC
AAATTCTCAGGCTCGAACGGGAACTGGGAAATTTATTTTCGCTGCTCAAC
TGACCACGAGCAGAAGGCAACCAAATTCGGTTGATCTTACGCGGGACGGG
AGTGCTGAACCCGTCTCGCGAGACCAAATTCTCAGGCGCGAATAGGGACA
GGGGAAAATTATTTCCCCTGTTCAGCTGACCACAAGCACAAGGCGACCAA
ATCAGGTTGATCCTTCTGCTAAAAGTGAGACCAGCAACAACACACCCTGC
TGAAAGTGTGACGATACATACATACATACTTGGTAATCTGCTAAATGTGA
TGACCAACAACAACAACAACTCTGTCGACTTGCCGTGAACTGTCGGATCT
ATGGAACATAAATGAAGCGCTACCCTCATTGGCAGTCGGGTAAGAGTAGA
AAGCCGAGCATTTAACTCCATTTGTATTTGGCTGCCTTTAACCTCTCAGT
TGGATTGGCTACTAGTAGGTTCAGAATCGTTTACCGCTCGATTCCGTTCG
ATTCAGTGCGTAGAAGAGTTTATAGTTTATAGAGCTCTACAGGAGGTCGA
CGAAAGCCTTGCCGGGCCTTCCTTGCTTCTCGGCGTCTACGGTAAATTTT
CCTTTGCTTCCAGCGCCAAATAGGCTGCAAGTAATTCAGAGCTCAGGCCC
CTTGCCTAATCTTCCGTTAATTGAACGATCGATTTCATGGTAGCCTCCTG
CCCTCTGTCTCGGAAAGATGTATCTGTTCGCGGTTCAATGACGCAAATTA
TATATTATATGAAGCCTTCTGCGGCATTGCTTTATTACTTTCGAAACGTC
TACTGTACCAGGTCGCGGTAGCGTTGTCGTTTCACTTGGGTTACCAAAAC
AGCCGGGCTGAAACGTGTGCACGAGGTGCTCACCATTACAGTCAACAGTG
CTCGAAGCTGACTCGTGGCGCATGCACACGTCATCAGCCGTATATTGCAC
GGAAGGGGTTCCTCCATGTAGATAACCCCGCTTCCGTTTTCGCGCCGATC
GCGCCCATCGTGTATTTTTTCTAAAAAAAAGGACTACAACAACCGGGACT
ACGCGCTGAGGCGCACACGAAAAGGCTTCGAAATGGCTCAAGGGTTTCCA
CCAGAGGAGGCCGAGGTGGCGTTTGAGAAAGGCAGGCAGCAACTTGAGGT
TATTCGGCGGCAGGCAACCATCAGCCACCTCTATCCTCATCAG
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Coding sequence (CDS) from alignment at H-elongata_contig59005:1517..3459+

>mRNA_H-elongata_contig59005.13409.1 ID=mRNA_H-elongata_contig59005.13409.1|Name=mRNA_H-elongata_contig59005.13409.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig59005:1517..3459+ (Himanthalia elongata Himel1 dioecious)
ATGACGCAACCCACGCGAACAGCAGTACTTGGGCTATACCGGGAACTTCG
CCGTCAGGGTGCTCGTCTAATGATGACGCAACCCACGCGAACAGCAGTAC
TTGGGCTATACCGGGAACTTCGCCGTCAGGGTGCTCGTCTAATGGACTAC
AACAACCGGGACTACGCGCTGAGGCGCACACGAAAAGGCTTCGAAATGGC
TCAAGGGTTTCCACCAGAGGAGGCCGAGGTGGCGTTTGAGAAAGGCAGGC
AGCAACTTGAGGTTATTCGGCGGCAGGCAACCATCAGCCACCTCTATCCT
CATCAGGACTACAACAACCGGGACTACGCGCTGAGGCGCACACGAAAAGG
CTTCGAAATGGCTCAAGGGTTTCCACCAGAGGAGGCCGAGGTGGCGTTTG
AGAAAGGCAGGCAGCAACTTGAGGTTATTCGGCGGCAGGCAACCATCAGC
CACCTCTATCCTCATCAG
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