mRNA_H-elongata_contig59004.13408.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59004.13408.1
Unique NamemRNA_H-elongata_contig59004.13408.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59004.13408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59004contigH-elongata_contig59004:1802..2158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size342
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.8060906-UTR-H-elongata_contig59004:1801..18161622930957.8060906-UTR-H-elongata_contig59004:1801..1816Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59004 1802..1816 +
1691679640.3304338-UTR-H-elongata_contig59004:1801..18161691679640.3304338-UTR-H-elongata_contig59004:1801..1816Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59004 1802..1816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.8246589-CDS-H-elongata_contig59004:1816..21581622930957.8246589-CDS-H-elongata_contig59004:1816..2158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59004 1817..2158 +
1691679640.3480148-CDS-H-elongata_contig59004:1816..21581691679640.3480148-CDS-H-elongata_contig59004:1816..2158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59004 1817..2158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59004.13408.1prot_H-elongata_contig59004.13408.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59004 1817..2158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59004.13408.1

>prot_H-elongata_contig59004.13408.1 ID=prot_H-elongata_contig59004.13408.1|Name=mRNA_H-elongata_contig59004.13408.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MECLLADLKDFGINADQWTIAAQDEGEWRKTAEQGAERFTTKLIAAEKVR
SMPQREEKDQGEDSLKQACSCWFARHSLLATTSANLYSGRFLFIFLLSLN
PWLFVQSFSDSPRP
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mRNA from alignment at H-elongata_contig59004:1802..2158+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59004.13408.1 ID=mRNA_H-elongata_contig59004.13408.1|Name=mRNA_H-elongata_contig59004.13408.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at H-elongata_contig59004:1802..2158+ (Himanthalia elongata Himel1 dioecious)
CAGGAAAAAGAGTGGATGGAGTGTCTTTTGGCAGACCTCAAAGATTTCGG
TATCAACGCCGACCAGTGGACGATTGCAGCCCAGGACGAGGGGGAATGGC
GCAAGACGGCGGAGCAAGGGGCGGAACGTTTCACGACGAAATTGATTGCT
GCAGAGAAAGTCCGTAGCATGCCCCAACGTGAAGAGAAGGACCAAGGAGA
GGATAGCCTAAAGCAAGCGTGCTCGTGCTGGTTTGCTCGCCATAGTTTAT
TAGCCACGACTAGCGCGAACTTGTACTCCGGACGTTTTTTATTTATTTTT
TTGCTTTCATTGAACCCCTGGCTCTTCGTCCAATCGTTCTCAGATAGCCC
GCGTCCC
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Coding sequence (CDS) from alignment at H-elongata_contig59004:1802..2158+

>mRNA_H-elongata_contig59004.13408.1 ID=mRNA_H-elongata_contig59004.13408.1|Name=mRNA_H-elongata_contig59004.13408.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig59004:1802..2158+ (Himanthalia elongata Himel1 dioecious)
ATGGAGTGTCTTTTGGCAGACCTCAAAGATTTCGGTATCAACGCCGACCA
GTGGACGATTGCAGCCCAGGACGAGGGGGAATGGCGCAAGACGGCGGAGC
AAGGGGCGGAACGTTTCACGACGAAATTGATTGCTGCAGAGAAAGTCCGT
AGCATGCCCCAACGTGAAGAGAAGGACCAAGGAGAGGATAGCCTAAAGCA
AGCGTGCTCGTGCTGGTTTGCTCGCCATAGTTTATTAGCCACGACTAGCG
CGAACTTGTACTCCGGACGTTTTTTATTTATTTTTTTGCTTTCATTGAAC
CCCTGGCTCTTCGTCCAATCGTTCTCAGATAGCCCGCGTCCCATGGAGTG
TCTTTTGGCAGACCTCAAAGATTTCGGTATCAACGCCGACCAGTGGACGA
TTGCAGCCCAGGACGAGGGGGAATGGCGCAAGACGGCGGAGCAAGGGGCG
GAACGTTTCACGACGAAATTGATTGCTGCAGAGAAAGTCCGTAGCATGCC
CCAACGTGAAGAGAAGGACCAAGGAGAGGATAGCCTAAAGCAAGCGTGCT
CGTGCTGGTTTGCTCGCCATAGTTTATTAGCCACGACTAGCGCGAACTTG
TACTCCGGACGTTTTTTATTTATTTTTTTGCTTTCATTGAACCCCTGGCT
CTTCGTCCAATCGTTCTCAGATAGCCCGCGTCCC
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