mRNA_H-elongata_contig59004.13407.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig59004.13407.1
Unique Name	mRNA_H-elongata_contig59004.13407.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig59004.13407.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.950e-14
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 2

Query:  128 LYDRLSAPLELKIRMLKAEVLETTMYGCVTWSPRTCHSDTLRRGHHIF-----GWRKSSRPDHQISYLDTLMKTGSE 343
            +YDR   PL LK+R+L+AEV+ET +YGCVTW+ +      LR  HH F     GW+K  R D  +SY   L+  G +
Sbjct:  163 MYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERKDRPLSYAKALITAGCD 239

[Close]

BLAST of mRNA_H-elongata_contig59004.13407.1 vs. uniprot
Match: A0A6H5J747_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J747_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.580e-12
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 2

Query:  128 LYDRLSAPLELKIRMLKAEVLETTMYGCVTWSPRTCHSDTLRRGHHIF-----GWRKSSRPDHQISYLDTLMKTGSE 343
            +YD   A  +LKIR+L+AEV+ET +YGC +WSP   H   L   H  F     GW K  R D  +SY   L++ G E
Sbjct:    1 MYDGRRANRQLKIRLLQAEVVETLLYGCASWSPTAEHYTKLNETHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCE 77

[Close]

BLAST of mRNA_H-elongata_contig59004.13407.1 vs. uniprot
Match: A0A6H5JI05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI05_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.490e-12
Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 2

Query:  119 NLELYDRLSAPLELKIRMLKAEVLETTMYGCVTWSPRTCHSDTLRRGHHIF-----GWRKSSRPDHQISYLDTLMKTGSE 343
            +  +YDR  A  +LKIR+L+AEV+ET +YGC +WS    H   L   H  F     GW K  R D  +SY   LM+ G E
Sbjct:   70 SASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALMQAGCE 149

[Close]

BLAST of mRNA_H-elongata_contig59004.13407.1 vs. uniprot
Match: A0A6H5KCA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA6_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.880e-11
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 2

Query:  128 LYDRLSAPLELKIRMLKAEVLETTMYGCVTWSPRTCHSDTLRRGHHIF-----GWRKSSRPDHQISYLDTLMKTGSE 343
            +YDR  A  +LKIR+L+AEV+ET +YGC +WS    H   L   H  F     GW K  R DH +SY   L++ G E
Sbjct:    1 MYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDHPLSYAQALIQAGCE 77

[Close]

BLAST of mRNA_H-elongata_contig59004.13407.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.080e-11
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 2

Query:  119 NLELYDRLSAPLELKIRMLKAEVLETTMYGCVTWSPRTCHSDTLRRGHHIF-----GWRKSSRPDHQISYLDTLMKTGSE 343
            +  +YDR  A  +LKIR+L+AEV+ET +YGC +WS  T H   L   H  F     GW K  R D  +SY   L++ G E
Sbjct:  447 SASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTTEHYAKLNETHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCE 526

[Close]

BLAST of mRNA_H-elongata_contig59004.13407.1 vs. uniprot
Match: A0A6H5L0D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.580e-11
Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 2

Query:  119 NLELYDRLSAPLELKIRMLKAEVLETTMYGCVTWSPRTCHSDTLRRGHHIF-----GWRKSSRPDHQISYLDTLMKTGSE 343
            +  +YDR  A  +LKIR+L+AEV+ET +YGC +WS    H   L   H  F     GW K  R D  +SY   L++ G E
Sbjct:   82 SASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCE 161

[Close]

BLAST of mRNA_H-elongata_contig59004.13407.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.620e-11
Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 2

Query:  119 NLELYDRLSAPLELKIRMLKAEVLETTMYGCVTWSPRTCHSDTLRRGHHIF-----GWRKSSRPDHQISYLDTLMKTGSE 343
            +  +YDR  A  +LKIR+L+AEV+ET +YGC +WS    H   L   H  F     GW K  R D  +SY   L++ G E
Sbjct:   26 SASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCE 105

[Close]

BLAST of mRNA_H-elongata_contig59004.13407.1 vs. uniprot
Match: A0A6H5K6B3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.360e-11
Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 2

Query:  119 NLELYDRLSAPLELKIRMLKAEVLETTMYGCVTWSPRTCHSDTLRRGHHIF-----GWRKSSRPDHQISYLDTLMKTGSE 343
            +  +YDR  A  +LKIR+L+AEV+ET +YGC +WS    H   L   H  F     GW K  R D  + Y  TLM+ G E
Sbjct:  241 SASMYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLPYAQTLMQAGCE 320

[Close]

BLAST of mRNA_H-elongata_contig59004.13407.1 vs. uniprot
Match: A0A6H5L376_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L376_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 8.220e-11
Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 2

Query:  119 NLELYDRLSAPLELKIRMLKAEVLETTMYGCVTWSPRTCHSDTLRRGHHIF-----GWRKSSRPDHQISYLDTLMKTGSE 343
            +  +YDR  A  +LKIR+L+AEV+ET +YGC +WS    H   L   H  F     GW K  R D  +SY   L++ G E
Sbjct:  124 SASMYDRRRADCQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCE 203

[Close]

BLAST of mRNA_H-elongata_contig59004.13407.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 9.370e-11
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 2

Query:  128 LYDRLSAPLELKIRMLKAEVLETTMYGCVTWSPRTCHSDTLRRGHHIF-----GWRKSSRPDHQISYLDTLMKTGSE 343
            +YDR  A  +LKIR+L+AEV+ET +YGC +WS    H   L   H  F     GW K  R D  +SY   L++ G E
Sbjct:    1 MYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCE 77

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig59004.13407.1 vs. uniprot

BLAST of mRNA_H-elongata_contig59004.13407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K2J8_9PHAE	2.950e-14	44.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J747_9PHAE	2.580e-12	42.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JI05_9PHAE	5.490e-12	42.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCA6_9PHAE	1.880e-11	44.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZD4_9PHAE	2.080e-11	42.50	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5L0D7_9PHAE	2.580e-11	41.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L6M5_9PHAE	2.620e-11	41.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K6B3_9PHAE	4.360e-11	42.50	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5L376_9PHAE	8.220e-11	41.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KGF6_9PHAE	9.370e-11	42.86	Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig59004	contig	H-elongata_contig59004:654..1685 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	345
Cds size	288
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig59004.13407.1	prot_H-elongata_contig59004.13407.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig59004 654..1628 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930957.7251966-CDS-H-elongata_contig59004:653..709	1622930957.7251966-CDS-H-elongata_contig59004:653..709	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig59004 654..709 +
1691679640.2909596-CDS-H-elongata_contig59004:653..709	1691679640.2909596-CDS-H-elongata_contig59004:653..709	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig59004 654..709 +
1622930957.7384663-CDS-H-elongata_contig59004:1396..1628	1622930957.7384663-CDS-H-elongata_contig59004:1396..1628	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig59004 1397..1628 +
1691679640.3038456-CDS-H-elongata_contig59004:1396..1628	1691679640.3038456-CDS-H-elongata_contig59004:1396..1628	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig59004 1397..1628 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930957.760351-UTR-H-elongata_contig59004:1628..1685	1622930957.760351-UTR-H-elongata_contig59004:1628..1685	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig59004 1629..1685 +
1691679640.3187637-UTR-H-elongata_contig59004:1628..1685	1691679640.3187637-UTR-H-elongata_contig59004:1628..1685	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig59004 1629..1685 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig59004:654..1685+
coding sequence from alignment at H-elongata_contig59004:654..1685+

protein sequence of mRNA_H-elongata_contig59004.13407.1

>prot_H-elongata_contig59004.13407.1 ID=prot_H-elongata_contig59004.13407.1|Name=mRNA_H-elongata_contig59004.13407.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
DEFNLLEEEGGDKLRLLDSWIPNFRVLYGTYSISIRNVVQPRTVRPTERP
PGAQNPDAESRGTRDNNVRLRHVEPADVPLRHAAPRPPYLRLAKE*

mRNA from alignment at H-elongata_contig59004:654..1685+

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig59004.13407.1 ID=mRNA_H-elongata_contig59004.13407.1|Name=mRNA_H-elongata_contig59004.13407.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1032bp|location=Sequence derived from alignment at H-elongata_contig59004:654..1685+ (Himanthalia elongata Himel1 dioecious)
GATGAATTCAACTTACTTGAAGAAGAGGGCGGAGATAAGTTGAGACTTCT
CGACAGGTGGGCTTTGCACCTCGACGCATGGTTGTATTTAGTATTTAGTA
TACGAGATAATATTCTAATCGATACAGAGTCATCCCGATGGCACCCTTTT
TCACGTTCATGGGGGCATTCGCCCTCTACTTGCTCTTCTACCCCCTCTCG
TAGCAGAAGCGAACGGACCGCCCGTTGGAAGGTGGTGTTGGATAGAAGAG
CCCTCAGGCGGTTACGATACTCTACAATAAGGAAGACGCTTTCGGCTTGA
ATGCGCCGAAAGTGTTGGCTGGATGACCACACACGAGGCTGCTACTGTCG
CCCTAGAGTACCTCTTCTCTTATTCCGATTCGTGTCTTTCCTTATATACA
GTATCCGAGCCGGATTAACCCCAAGGACAACCGTGGAATGTGCTTCGATT
GGTACAGCATAGCGCATGAGCACCTTTCAAAGCAAGAGCTGCGGCATTAT
GGACAGTAGCCGAGCCGGATAGCGTTGGCCCTTATTAATATGAATATGAA
TAGTACATTATCCACGCCATCCTTCACAGCTGAAGCTGATGGCAGCAGTG
CCGCCGAAGTTCGTCCCAACCTTGAATCCCAATTATAGAATCCACGTGAT
TGATAAAAGTATTAGTGCCCAACAAGATTTTCATGACATGGGCATCTCTG
TTTCCGTTTTTTTTTTTTTCCATGACCGACCGCGGATCTCAAGCTGGATC
CCTAACTTTCGAGTACTGTACGGTACCTACTCCATAAGCATACGCAATGT
AGTACAACCTCGAACTGTACGACCGACTGAGCGCCCCCCTGGAGCTCAAA
ATCCGGATGCTGAAAGCCGAGGTACTCGAGACAACAATGTACGGCTGCGT
CACGTGGAGCCCGCGGACGTGCCACTCCGACACGCTGCGCCGAGGCCACC
ATATCTTCGGTTGGCGAAAGAGTAGTCGCCCCGATCACCAGATCTCCTAT
CTTGACACCCTCATGAAGACGGGAAGTGAGAG

Coding sequence (CDS) from alignment at H-elongata_contig59004:654..1685+

>mRNA_H-elongata_contig59004.13407.1 ID=mRNA_H-elongata_contig59004.13407.1|Name=mRNA_H-elongata_contig59004.13407.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig59004:654..1685+ (Himanthalia elongata Himel1 dioecious)
GATGAATTCAACTTACTTGAAGAAGAGGGCGGAGATAAGTTGAGACTTCT
CGACAGGATGAATTCAACTTACTTGAAGAAGAGGGCGGAGATAAGTTGAG
ACTTCTCGACAGCTGGATCCCTAACTTTCGAGTACTGTACGGTACCTACT
CCATAAGCATACGCAATGTAGTACAACCTCGAACTGTACGACCGACTGAG
CGCCCCCCTGGAGCTCAAAATCCGGATGCTGAAAGCCGAGGTACTCGAGA
CAACAATGTACGGCTGCGTCACGTGGAGCCCGCGGACGTGCCACTCCGAC
ACGCTGCGCCGAGGCCACCATATCTTCGGTTGGCGAAAGAGTAGCTGGAT
CCCTAACTTTCGAGTACTGTACGGTACCTACTCCATAAGCATACGCAATG
TAGTACAACCTCGAACTGTACGACCGACTGAGCGCCCCCCTGGAGCTCAA
AATCCGGATGCTGAAAGCCGAGGTACTCGAGACAACAATGTACGGCTGCG
TCACGTGGAGCCCGCGGACGTGCCACTCCGACACGCTGCGCCGAGGCCAC
CATATCTTCGGTTGGCGAAAGAGTAG