mRNA_H-elongata_contig59004.13406.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59004.13406.1
Unique NamemRNA_H-elongata_contig59004.13406.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59004.13406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59004contigH-elongata_contig59004:104..613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size259
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.565253-CDS-H-elongata_contig59004:103..2211622930957.565253-CDS-H-elongata_contig59004:103..221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59004 104..221 +
1691679640.273456-CDS-H-elongata_contig59004:103..2211691679640.273456-CDS-H-elongata_contig59004:103..221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59004 104..221 +
1622930957.6539783-CDS-H-elongata_contig59004:473..6131622930957.6539783-CDS-H-elongata_contig59004:473..613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59004 474..613 +
1691679640.2816124-CDS-H-elongata_contig59004:473..6131691679640.2816124-CDS-H-elongata_contig59004:473..613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59004 474..613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59004.13406.1prot_H-elongata_contig59004.13406.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59004 104..613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59004.13406.1

>prot_H-elongata_contig59004.13406.1 ID=prot_H-elongata_contig59004.13406.1|Name=mRNA_H-elongata_contig59004.13406.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
KHYRDSRCVEQDQFCDSSSENLDVHRPRIYLPNTGRITTGDPRKRVWTGK
SFRRLHFRTGILHEVLGNGDFSKRISRASVPGRGER
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mRNA from alignment at H-elongata_contig59004:104..613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59004.13406.1 ID=mRNA_H-elongata_contig59004.13406.1|Name=mRNA_H-elongata_contig59004.13406.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at H-elongata_contig59004:104..613+ (Himanthalia elongata Himel1 dioecious)
AAGCATTACCGCGATTCGAGATGCGTGGAGCAAGATCAGTTTTGCGACAG
CTCCTCTGAGAACCTCGATGTACATCGGCCGAGGATTTATTTGCCAAATA
CTGGCCGCATTACCACAGGTCAGACCGATGTATTCTTGTTTGTTTGTTCT
TTTTTGTTAAATATGCGGCGGGTACGAGTTATGACTGTTTTCGTTGTTGT
ACGGATATGACTTTGTACTATATAGGTATTAACAGTCAGTACGCACACTG
AAGTTACTTCATTAGACTATTGCACAGAGTCAGAATTATTGCCAGTAGTA
CGTGGAGGGGGGATACTCAGCTCGAAATATGACCTGCGATCCCTTCCTTT
GGGTACCACTCTGGAAACAGGGGACCCCCGAAAACGTGTGTGGACCGGGA
AAAGCTTTCGTCGTCTCCATTTCAGGACCGGCATCCTCCACGAAGTTCTT
GGAAATGGAGACTTCTCAAAGAGAATTTCACGAGCTAGCGTTCCTGGGAG
AGGAGAACGC
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Coding sequence (CDS) from alignment at H-elongata_contig59004:104..613+

>mRNA_H-elongata_contig59004.13406.1 ID=mRNA_H-elongata_contig59004.13406.1|Name=mRNA_H-elongata_contig59004.13406.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig59004:104..613+ (Himanthalia elongata Himel1 dioecious)
AAGCATTACCGCGATTCGAGATGCGTGGAGCAAGATCAGTTTTGCGACAG
CTCCTCTGAGAACCTCGATGTACATCGGCCGAGGATTTATTTGCCAAATA
CTGGCCGCATTACCACAGAAGCATTACCGCGATTCGAGATGCGTGGAGCA
AGATCAGTTTTGCGACAGCTCCTCTGAGAACCTCGATGTACATCGGCCGA
GGATTTATTTGCCAAATACTGGCCGCATTACCACAGGGGACCCCCGAAAA
CGTGTGTGGACCGGGAAAAGCTTTCGTCGTCTCCATTTCAGGACCGGCAT
CCTCCACGAAGTTCTTGGAAATGGAGACTTCTCAAAGAGAATTTCACGAG
CTAGCGTTCCTGGGAGAGGAGAACGCGGGACCCCCGAAAACGTGTGTGGA
CCGGGAAAAGCTTTCGTCGTCTCCATTTCAGGACCGGCATCCTCCACGAA
GTTCTTGGAAATGGAGACTTCTCAAAGAGAATTTCACGAGCTAGCGTTCC
TGGGAGAGGAGAACGC
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