mRNA_H-elongata_contig5894.13395.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5894.13395.1
Unique NamemRNA_H-elongata_contig5894.13395.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5894.13395.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 8.580e-39
Identity = 78/205 (38.05%), Postives = 113/205 (55.12%), Query Frame = 1 
Query:  517 VKRVEIELTAHQRHMMPVDRECCWSHANGITKGFRACEPRDGGPMESQTELWACVQESLCNITDQNLQIATLRDPRAVTVSTYFHLAQRKSPRMANEGIESVDDFFIKYLDVITQWVSLRYFLFTEIIPERSEVFWYEDAVADPIEWHSRYYAFVGLQLPVRAIHYAAAGAIQGGNIFGFHAKGRDY-----HPGGEEKSPTRTF 1116
            ++RVEI ++   +H +PV+  C WSH +G       C   DG P+E+  +LWAC+Q++ C ITD  LQ   +RDPRAV VSTYFH   + +         S+D   ++ L V+  + +LR+ LF  ++  R+E+FWYE  V DP +WH R+ +F GL LP             GG I G  A+ + +     HPGG E S  RT+
Sbjct:    2 LRRVEISISTVDKHRLPVNESCPWSHGSGTVHEGDGCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFHRVHKDNNYQKLHP--SLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILP-------------GGWIDGMVAENQAHKHLNPHPGGAETSDNRTW 191
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BLAST of mRNA_H-elongata_contig5894.13395.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 1.810e-37
Identity = 84/265 (31.70%), Postives = 136/265 (51.32%), Query Frame = 1 
Query:  379 LQRLYGRESCQILFKNETSNKRQLHS-------------IIFKPEL------ATNDSLKPCTCTSVKRVEIELTAHQRHMMPVDRECCWSHANGITKGFRACEPRDGGPMESQTELWACVQESLCNITDQNLQIATLRDPRAVTVSTYFHLAQRKSPRMANEGIESVDDFFIKYLDVITQWVSLRYFLFTEIIPERSEVFWYEDAVADPIEWHSRYYAFVGLQLPVRAIHYAAAGAIQGGNIFGFHAKGRDYHPGGEEKSPTRTF 1116
            L RLYG  +C   ++   S ++Q                 +FKP        A   S  PC C++V +V I +++  +H +PV   C W H + +T   + C   +G  + + T+   C+Q+  C I D  +Q+  LRDPRAV VS++FHL     P   +   ESVD F ++ L  I  ++ LRY +  E +  ++  F Y++++ADP++WH R+ + VGL  P   +  A   +++    +GF  KG D HPGG+E +  RT+
Sbjct:  130 LGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLR--REYGFAGKGVDKHPGGKEATEKRTW 392
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BLAST of mRNA_H-elongata_contig5894.13395.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.510e-18
Identity = 52/142 (36.62%), Postives = 81/142 (57.04%), Query Frame = 1 
Query:  700 ITDQNLQIATLRDPRAVTVSTYFHLAQRKSPRMANEGI---ESVDDFFIKYLDVITQWVSLRYFLFTEIIPERSEVFWYEDAVADPIEWHSRYYAFVGLQLPVRAIHYAAAGAIQGGNIFGFHAKGRDYHPGGEEKSPTRTF 1116
            + D +LQ A LRDPRAV VSTYF++  +  P   ++ +   +S+D+  +  L  + Q+ ++R+ LF   + ++SE+FWYEDA+ DP+ WH R+ +F G  LP   I    A   +           RD HPGG++ S  RT+
Sbjct:   25 LLDDSLQFAVLRDPRAVAVSTYFYV--KSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDIDATLPEAQQKVK-----RDPHPGGQQVSSKRTW 159
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BLAST of mRNA_H-elongata_contig5894.13395.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 5.280e-16
Identity = 49/132 (37.12%), Postives = 78/132 (59.09%), Query Frame = 1 
Query:  730 LRDPRAVTVSTYFHLAQRKSP---RMANEGIESVDDFFIKYLDVITQWVSLRYFLFTEIIPERSEVFWYEDAVADPIEWHSRYYAFVGLQLPVRAIHYAAAGAIQGGNIFGFHAKGRDYHPGGEEKSPTRTF 1116
            +RDPRAV VSTYF++  ++SP      + G +S+D+  +  L  I Q+ ++R+ LF   + +RSE+FWYEDA+ DP+ W++R+ +  G  LP R I    A   +       + + R+ HPGG+  S  RT+
Sbjct:    1 MRDPRAVAVSTYFYI--KRSPIHLHHPSRG-KSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAE----NDRKREPHPGGQVVSSDRTW 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5894.13395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KDV7_9PHAE8.580e-3938.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJE4_ECTSI1.810e-3731.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG38_9PHAE4.510e-1836.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2T4_ECTSI5.280e-1637.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5894contigH-elongata_contig5894:7162..10754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1118
Cds size558
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5894.13395.1prot_H-elongata_contig5894.13395.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5894 7162..7719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.869412-CDS-H-elongata_contig5894:7161..77191622930955.869412-CDS-H-elongata_contig5894:7161..7719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5894 7162..7719 -
1691679639.6512644-CDS-H-elongata_contig5894:7161..77191691679639.6512644-CDS-H-elongata_contig5894:7161..7719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5894 7162..7719 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.882603-UTR-H-elongata_contig5894:7719..77531622930955.882603-UTR-H-elongata_contig5894:7719..7753Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5894 7720..7753 -
1691679639.661403-UTR-H-elongata_contig5894:7719..77531691679639.661403-UTR-H-elongata_contig5894:7719..7753Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5894 7720..7753 -
1622930955.9048934-UTR-H-elongata_contig5894:8248..84251622930955.9048934-UTR-H-elongata_contig5894:8248..8425Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5894 8249..8425 -
1691679639.670423-UTR-H-elongata_contig5894:8248..84251691679639.670423-UTR-H-elongata_contig5894:8248..8425Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5894 8249..8425 -
1622930955.923345-UTR-H-elongata_contig5894:10407..107541622930955.923345-UTR-H-elongata_contig5894:10407..10754Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5894 10408..10754 -
1691679639.679622-UTR-H-elongata_contig5894:10407..107541691679639.679622-UTR-H-elongata_contig5894:10407..10754Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5894 10408..10754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5894.13395.1

>prot_H-elongata_contig5894.13395.1 ID=prot_H-elongata_contig5894.13395.1|Name=mRNA_H-elongata_contig5894.13395.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
MMPVDRECCWSHANGITKGFRACEPRDGGPMESQTELWACVQESLCNITD
QNLQIATLRDPRAVTVSTYFHLAQRKSPRMANEGIESVDDFFIKYLDVIT
QWVSLRYFLFTEIIPERSEVFWYEDAVADPIEWHSRYYAFVGLQLPVRAI
HYAAAGAIQGGNIFGFHAKGRDYHPGGEEKSPTRTF
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mRNA from alignment at H-elongata_contig5894:7162..10754-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5894.13395.1 ID=mRNA_H-elongata_contig5894.13395.1|Name=mRNA_H-elongata_contig5894.13395.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3593bp|location=Sequence derived from alignment at H-elongata_contig5894:7162..10754- (Himanthalia elongata Himel1 dioecious)
AGGGCTTTTCCTGGCGTCTGGTTCCAGACATTCCGATCGAGACACTCCGA
GATCTCCTCCGCCAAGGCGCTTTCGAGGGAATAGTATTATACATATATAC
CTTCTTCTTTTCACGAAGATGAAGTTTGGCTCTATCGTCGCTCAAGCCAT
CACGCTCTTGATACGCTGCGCGTCCGGTACCTCCTCGACGTCAGAGGTTG
AGTGGCCGTCCCCGGTCGAGGTCTTTCCTGACGTAGAATGCCCGCTCGAC
TGCCAAGATATATTTGGTAACCTTGAGGACGGGCTAGATGGGAATAAGAC
GCGGTCCGTGAGGTTACAGCTACGAGGAGAGCCGAAGAGTGGCACAGGTG
ATTGGCATGCAAGTTCTTGCTGCGTTGTGCGTATGTTTCCGCACGAATTT
GATCCGACATATTGTAAGCAGAGGTCGTACCGTTCGTCATATAGTATGAG
TAATCTAATATAACACCCCCTTTGAGGTTGACTTTATCCCACATTCCCAA
TAGGTGAAAGTATCACTCATTCCCTCGTTCTGATGATAACGACAAAACGT
TTGTTTGGTAGACAAACACACACGCTTGCGAAGCGTTCAAGCAGGAGGAG
TAAGGTCGATTTCTTAACAGAGCGGATGGTTTGTTAGTCAATCAAGCTAT
GTCACGGCCGCTAAAGTGGCTAGGGAGGGGTCGCATTTTAGAGATTGAGT
CACCGGTGTTGTCTATGACAACCTCCGTATGTTCGTTGTCGTCCGAGTGG
ATGAGGTTTGCCACACGCCAAAGGTGGGCTTCATGACGAAGGCGGTTATC
GTCGGTGAAACCTTCGTGGATTTCAAGGCCACAAAGCACCTAAAAGCGGG
CAGCGCTTCTGGTAGTAGCTTCGCCACTGCTGCTGCAGAGGCTCCCAAAC
ATTCGTCCAGGGTATGCGCCGTTTGATGTGCACAGCTTTAAACAAAACGT
CGTGGAGGCGAAGATCTATGGCCAGCTCATGAAAGCTGTGGGAAACTCGT
CTTACGGTAAACCCACGTAGGGTGGTGGACGGGGGGCACATCGTGAGAAA
GGGTGTAATAAAGAAGCTCCTTATGTCAATTATTTCCGTGGCTACGTTAG
TGGCTATATCGTAGCGAGTGCACATGTTTAGGGTTGTGTTGCGTGTAAGG
TAGGAGAGGGTGTGGATTACTTGGGTTAGCCAGCGCGTGTCGAGTAGGCA
TGTACTGTAGGATGCTACTGGGGGGATTTGTTTGCTTGAATGTGTTTTAA
GGGACGAATTGCACTATGATAGTCGCCCAAGCGGGTTGAATCACATCATG
TTAATGGTGTGCTTTTGTGTGCTTTTCTGCGGTCCTTATATCTTACAAGT
GCCGTGGGCTTTTGTCGTCGAGTTGTTTACCTATTCGTGCGTATGCGGGT
ACTTTGTTTCCGTTGCGGTTAATATAGCTGGTGGCACGGGTGTGTGAGTT
TGGCATCTCACTGTTCTTGACCTGGATCAGGGATTTGGCACTTCATGTAT
CTTTCTTGTAGGATGTGTGATCACACCGGATCTTAACCTGATCGCCTTAC
TGGTCGGCTCTTTGTCTAGAGGTAAATATAAATACATTTCTCCGTTTTCG
CTTTGTTTTAGGAGGGTGTTGATGCGGGTGCAAGGTACTAAAAACAATTG
TCAAATTTACGTGGTTGATAAACGGTGCATTTTTCCTTGGATGGAGGGAA
GAGAAGCATTGTTATATAGGAAACACGGGGCTGGAAAATTTCTAAACATA
CATCATACAGAAATTAATATGCGTAAAGGATGAGAATACAATACCTGCGC
CGCGACCATGTGGTTCACGGCTCATACTTAAAGTATTAGAAATGAAGCGC
CGCCCCCAGAAAATAAAGGTAGTCCTGAAGCCCATGAAATTATTGGCGGC
CGGAGCTGCCGCACTAATAACTACATTAGTCCAGCCTCAGTCAGGGGGGT
GGATCTTCTCTCACGAAAGCGACATTTTACAAATTCTTTTGAAGGCGAGA
CACTATACCATATTATGATTTAGTCAACCTACCGACGTATATACGCCATG
CTGCCTGATTTGCTGTTTCTTCACAAAATGTGTATGCGCATTTTAGACTA
ACGCTGTCAGAGGCGGACGTCCCCCTTAGCCACCCCGAAGCTAATATATA
GCAAAACTAAACCGTGCCGTGAATGCTGGGTTATTTGGAAATGAATATGA
TGCATAAAACGTACTTTTCCTCAGACGATGCCGCCGCATTGCCCCCTTAC
ATTCTCACTCGCCAACTTTACCCTGAAATATTTTGACCCCTGGTGATTCA
TTACCTTAAGGCATGACAATGGGATGGAGCTGGGGAGCACTAGCTCACGT
CGGTCTCTATCTGCAGCGTCTGTACGGTCGGGAAAGCTGCCAAATCCTGT
TTAAAAACGAGACAAGCAACAAACGACAACTCCATTCTATCATTTTCAAG
CCGGAACTAGCGACCAACGACAGCCTAAAGCCCTGTACCTGCACTAGCGT
CAAGAGGTGAGAGCGGAGAGGAACACGTTATGGAATATATACACTTGTAA
TCGAGGTAAGTCAGCTATTCTTTTCGGGGAAAGTATGCCGTACTGCAAGG
TAAAGCTCCTTTCTCAACTTGAAGTCGGTGGCGTGGCATTCCCATATCGT
GGATTTGCCAACTTTCTGCGAGCCCCTCGCGAGGCCATTCAACTCTCAAT
GTTACAATAACTTGATTGATTGGCCACCATTGTTTGCGCGTGCTAGTAAA
ATGTTAAGATTCAAGGTTACGCTTTGCCCCAACCCATTAGATCACAGTTT
CAGCTCGCGTTTCCTTCTGCATAGCGCGATGCTGCGCGCACGCGAAATGC
TCTAGGCGCATGTTTCTGGTGAAAGTGAGTATAGTGTACACATGTTCACT
TCAGTAACACTCTTCACATCATACATCATATATGCCGCTGCACTACTCCG
GCCCCCTTACCCCCCCTTGCACCTCGACTGGATGCAACCGTTTCCTTTAA
GAGTGGAAATTGAACTTACCGCTCACCAAAGGCACATGATGCCCGTCGAC
CGGGAATGCTGCTGGTCTCACGCGAACGGCATCACGAAGGGCTTTCGGGC
GTGCGAGCCGCGGGACGGTGGGCCGATGGAAAGCCAGACAGAACTGTGGG
CGTGCGTTCAGGAGTCCCTGTGTAACATCACGGACCAAAATTTACAGATA
GCGACGCTTCGCGACCCGCGCGCCGTGACGGTCAGCACCTACTTCCATCT
CGCCCAGAGGAAATCGCCGAGAATGGCCAACGAAGGAATCGAGTCCGTGG
ACGACTTTTTTATCAAATACCTAGACGTCATAACACAGTGGGTTAGCCTT
CGATACTTTCTCTTCACTGAGATTATACCCGAGAGGTCCGAAGTGTTCTG
GTACGAGGATGCGGTTGCTGACCCGATTGAGTGGCACAGTCGTTATTACG
CATTCGTTGGTTTGCAGCTACCTGTTCGGGCGATTCACTACGCTGCAGCT
GGAGCCATCCAGGGCGGGAACATATTTGGTTTCCATGCTAAAGGTCGTGA
TTATCACCCCGGCGGCGAGGAGAAATCGCCTACTCGAACGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig5894:7162..10754-

>mRNA_H-elongata_contig5894.13395.1 ID=mRNA_H-elongata_contig5894.13395.1|Name=mRNA_H-elongata_contig5894.13395.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig5894:7162..10754- (Himanthalia elongata Himel1 dioecious)
ATGATGCCCGTCGACCGGGAATGCTGCTGGTCTCACGCGAACGGCATCAC
GAAGGGCTTTCGGGCGTGCGAGCCGCGGGACGGTGGGCCGATGGAAAGCC
AGACAGAACTGTGGGCGTGCGTTCAGGAGTCCCTGTGTAACATCACGGAC
CAAAATTTACAGATAGCGACGCTTCGCGACCCGCGCGCCGTGACGGTCAG
CACCTACTTCCATCTCGCCCAGAGGAAATCGCCGAGAATGGCCAACGAAG
GAATCGAGTCCGTGGACGACTTTTTTATCAAATACCTAGACGTCATAACA
CAGTGGGTTAGCCTTCGATACTTTCTCTTCACTGAGATTATACCCGAGAG
GTCCGAAGTGTTCTGGTACGAGGATGCGGTTGCTGACCCGATTGAGTGGC
ACAGTCGTTATTACGCATTCGTTGGTTTGCAGCTACCTGTTCGGGCGATT
CACTACGCTGCAGCTGGAGCCATCCAGGGCGGGAACATATTTGGTTTCCA
TGCTAAAGGTCGTGATTATCACCCCGGCGGCGAGGAGAAATCGCCTACTC
GAACGTTCATGATGCCCGTCGACCGGGAATGCTGCTGGTCTCACGCGAAC
GGCATCACGAAGGGCTTTCGGGCGTGCGAGCCGCGGGACGGTGGGCCGAT
GGAAAGCCAGACAGAACTGTGGGCGTGCGTTCAGGAGTCCCTGTGTAACA
TCACGGACCAAAATTTACAGATAGCGACGCTTCGCGACCCGCGCGCCGTG
ACGGTCAGCACCTACTTCCATCTCGCCCAGAGGAAATCGCCGAGAATGGC
CAACGAAGGAATCGAGTCCGTGGACGACTTTTTTATCAAATACCTAGACG
TCATAACACAGTGGGTTAGCCTTCGATACTTTCTCTTCACTGAGATTATA
CCCGAGAGGTCCGAAGTGTTCTGGTACGAGGATGCGGTTGCTGACCCGAT
TGAGTGGCACAGTCGTTATTACGCATTCGTTGGTTTGCAGCTACCTGTTC
GGGCGATTCACTACGCTGCAGCTGGAGCCATCCAGGGCGGGAACATATTT
GGTTTCCATGCTAAAGGTCGTGATTATCACCCCGGCGGCGAGGAGAAATC
GCCTACTCGAACGTTC
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