mRNA_H-elongata_contig58898.13390.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58898.13390.1
Unique NamemRNA_H-elongata_contig58898.13390.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58898.13390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58898contigH-elongata_contig58898:837..1711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size875
Cds size621
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.460712-UTR-H-elongata_contig58898:836..10901622930955.460712-UTR-H-elongata_contig58898:836..1090Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58898 837..1090 +
1691679639.483444-UTR-H-elongata_contig58898:836..10901691679639.483444-UTR-H-elongata_contig58898:836..1090Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58898 837..1090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.4796815-CDS-H-elongata_contig58898:1090..17111622930955.4796815-CDS-H-elongata_contig58898:1090..1711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58898 1091..1711 +
1691679639.4939296-CDS-H-elongata_contig58898:1090..17111691679639.4939296-CDS-H-elongata_contig58898:1090..1711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58898 1091..1711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58898.13390.1prot_H-elongata_contig58898.13390.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58898 1091..1711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58898.13390.1

>prot_H-elongata_contig58898.13390.1 ID=prot_H-elongata_contig58898.13390.1|Name=mRNA_H-elongata_contig58898.13390.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
MPSLTSHPRYSAKFLSRKKQWRLACGAGARRSRTLPRHEPETTTISGGTR
SADGRAKYRARGPPIPEVNSRAAPMPSRQPASSTNSATYSTSGTCSNGDI
TEKKRRVRFDSTIQVMLVPTRHELKSKGLVDDGADEAVRRKRDNDDNGIW
WTMRDCFGFRKAYRRQIIASGLKCTSLLCPTSVVFLIGAEDEEDAKKEDK
ISSNRSQ
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mRNA from alignment at H-elongata_contig58898:837..1711+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58898.13390.1 ID=mRNA_H-elongata_contig58898.13390.1|Name=mRNA_H-elongata_contig58898.13390.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=875bp|location=Sequence derived from alignment at H-elongata_contig58898:837..1711+ (Himanthalia elongata Himel1 dioecious)
CTGAGTTTTGGAGAAGACTGTAACTGTCCGACTCGAGAAAGCTTTCCCAA
ATATATAGAAAACACGTGGGTCCTATACCAGCCTATTCGGTCATATACCC
CGCCTATACGGCCAGGAACTCAAAGGCAAAACATTTGCTCCTGCTGTACA
AACCACTCGAAACGAGGACCCTCAGCGGCTACAAATTCCACGGGTGTGCC
GCCCCCAACTTGTCACTTTCTCACAAGCACATCACCAAAAGAACCGAGAA
TAAGATGCCCTCCTTGACGAGCCATCCACGCTATTCGGCCAAGTTTCTCT
CGAGAAAGAAGCAGTGGAGACTAGCTTGCGGCGCTGGTGCCAGGCGCTCG
CGTACTCTCCCACGGCATGAACCGGAGACAACCACAATCAGTGGAGGCAC
CAGAAGCGCGGACGGACGAGCTAAATATCGAGCAAGAGGACCACCAATCC
CAGAGGTAAACTCCAGGGCGGCTCCAATGCCCTCGAGGCAACCGGCAAGC
AGTACGAATAGCGCTACCTACAGCACAAGCGGCACTTGTAGCAACGGCGA
CATCACGGAAAAGAAGCGGAGAGTCAGATTTGACTCAACCATCCAGGTCA
TGCTTGTCCCCACAAGACACGAATTGAAAAGCAAGGGGCTTGTAGATGAC
GGGGCTGATGAGGCAGTAAGGCGGAAGCGCGACAACGATGATAACGGTAT
CTGGTGGACGATGCGCGACTGCTTCGGCTTCCGGAAAGCGTATCGGCGCC
AAATAATCGCCTCGGGGCTAAAATGCACGTCATTGCTGTGTCCGACCAGC
GTTGTCTTCCTGATTGGAGCTGAGGATGAAGAGGATGCGAAGAAGGAGGA
TAAAATAAGCTCCAACCGCAGCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig58898:837..1711+

>mRNA_H-elongata_contig58898.13390.1 ID=mRNA_H-elongata_contig58898.13390.1|Name=mRNA_H-elongata_contig58898.13390.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig58898:837..1711+ (Himanthalia elongata Himel1 dioecious)
ATGCCCTCCTTGACGAGCCATCCACGCTATTCGGCCAAGTTTCTCTCGAG
AAAGAAGCAGTGGAGACTAGCTTGCGGCGCTGGTGCCAGGCGCTCGCGTA
CTCTCCCACGGCATGAACCGGAGACAACCACAATCAGTGGAGGCACCAGA
AGCGCGGACGGACGAGCTAAATATCGAGCAAGAGGACCACCAATCCCAGA
GGTAAACTCCAGGGCGGCTCCAATGCCCTCGAGGCAACCGGCAAGCAGTA
CGAATAGCGCTACCTACAGCACAAGCGGCACTTGTAGCAACGGCGACATC
ACGGAAAAGAAGCGGAGAGTCAGATTTGACTCAACCATCCAGGTCATGCT
TGTCCCCACAAGACACGAATTGAAAAGCAAGGGGCTTGTAGATGACGGGG
CTGATGAGGCAGTAAGGCGGAAGCGCGACAACGATGATAACGGTATCTGG
TGGACGATGCGCGACTGCTTCGGCTTCCGGAAAGCGTATCGGCGCCAAAT
AATCGCCTCGGGGCTAAAATGCACGTCATTGCTGTGTCCGACCAGCGTTG
TCTTCCTGATTGGAGCTGAGGATGAAGAGGATGCGAAGAAGGAGGATAAA
ATAAGCTCCAACCGCAGCCAGATGCCCTCCTTGACGAGCCATCCACGCTA
TTCGGCCAAGTTTCTCTCGAGAAAGAAGCAGTGGAGACTAGCTTGCGGCG
CTGGTGCCAGGCGCTCGCGTACTCTCCCACGGCATGAACCGGAGACAACC
ACAATCAGTGGAGGCACCAGAAGCGCGGACGGACGAGCTAAATATCGAGC
AAGAGGACCACCAATCCCAGAGGTAAACTCCAGGGCGGCTCCAATGCCCT
CGAGGCAACCGGCAAGCAGTACGAATAGCGCTACCTACAGCACAAGCGGC
ACTTGTAGCAACGGCGACATCACGGAAAAGAAGCGGAGAGTCAGATTTGA
CTCAACCATCCAGGTCATGCTTGTCCCCACAAGACACGAATTGAAAAGCA
AGGGGCTTGTAGATGACGGGGCTGATGAGGCAGTAAGGCGGAAGCGCGAC
AACGATGATAACGGTATCTGGTGGACGATGCGCGACTGCTTCGGCTTCCG
GAAAGCGTATCGGCGCCAAATAATCGCCTCGGGGCTAAAATGCACGTCAT
TGCTGTGTCCGACCAGCGTTGTCTTCCTGATTGGAGCTGAGGATGAAGAG
GATGCGAAGAAGGAGGATAAAATAAGCTCCAACCGCAGCCAG
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