mRNA_H-elongata_contig58831.13382.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58831.13382.1
Unique NamemRNA_H-elongata_contig58831.13382.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58831.13382.1 vs. uniprot
Match: D7FVP4_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP4_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 8.190e-45
Identity = 69/105 (65.71%), Postives = 85/105 (80.95%), Query Frame = 1
Query:   10 QDPVKRWEPYMCNLAVEKSYRGKGLGRQLVRLCEHVAKNHWGYKRMYLHVDLDDPAAMGLYSSMGYESITQYDTPVWIRRLLGMPTIRYQVKQLRFQRRATRLLS 324
            + P ++W+PYMCNLAV + YRG G G+QLVRLCEHVAKN WGY+RMYLHVDL DPAA GLYSSMGYE I +YD P+W+R+L G PTIRYQVK+ + ++ A  L +
Sbjct:  275 EKPPEQWQPYMCNLAVAEEYRGNGYGKQLVRLCEHVAKNSWGYERMYLHVDLGDPAATGLYSSMGYEGIEKYDAPLWMRKLFGWPTIRYQVKRFKGRKGAPALAA 379          
BLAST of mRNA_H-elongata_contig58831.13382.1 vs. uniprot
Match: D7FVP3_ECTSI (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVP3_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 5.690e-38
Identity = 59/90 (65.56%), Postives = 69/90 (76.67%), Query Frame = 1
Query:   16 PVKRWEPYMCNLAVEKSYRGKGLGRQLVRLCEHVAKNHWGYKRMYLHVDLDDPAAMGLYSSMGYESITQYDTPVWIRRLLGMPTIRYQVK 285
            P+  WEPYMCNLAV + YRG G G+QLVRLCE VAK HWGY+RMYLHVD   PAA  LYSSMGYE + Q+  P W+++LLG+  I YQVK
Sbjct:   91 PMTGWEPYMCNLAVTEKYRGNGYGKQLVRLCEGVAKKHWGYERMYLHVDAASPAATSLYSSMGYEIMEQFQPPSWVKKLLGLRDILYQVK 180          
BLAST of mRNA_H-elongata_contig58831.13382.1 vs. uniprot
Match: A0A6H5KVK2_9PHAE (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK2_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 7.900e-36
Identity = 59/90 (65.56%), Postives = 69/90 (76.67%), Query Frame = 1
Query:   16 PVKRWEPYMCNLAVEKSYRGKGLGRQLVRLCEHVAKNHWGYKRMYLHVDLDDPAAMGLYSSMGYESITQYDTPVWIRRLLGMPTIRYQVK 285
            P+  WEPYMCNLAV + YRG G G+QLVRLCE VAK HWGY+RMYLHVD   PAA  LYSSMGYE + Q+  P W+++LLG+  I YQVK
Sbjct:  306 PMTGWEPYMCNLAVAEKYRGNGYGKQLVRLCEGVAKKHWGYERMYLHVDAASPAATSLYSSMGYEIMEQFQPPSWVKKLLGLRDILYQVK 395          
BLAST of mRNA_H-elongata_contig58831.13382.1 vs. uniprot
Match: A0A7S2GAU2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GAU2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.300e-20
Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 WSDQDPVKRWEPYMCNLAVEKSYRGKGLGRQLVRLCEHVAKNHWGYKRMYLHVD--LDDPAAMGLYSSMGYESITQYDT-PVWIRRLLGMPTIRYQVKQL 291
            W     +K   PY+CN+AV ++ R K +G  L+RLCE +A+ HW +  +YLHVD   DD AA+ LY+S+GYE++ + +  P  + R LGMP++    KQL
Sbjct:   22 WRPDPVLKDLRPYVCNVAVAEAARRKKIGTNLLRLCEQIARRHWDFDEIYLHVDPSKDDAAALKLYTSLGYENVPELNICPGPLDRALGMPSLISMKKQL 121          
BLAST of mRNA_H-elongata_contig58831.13382.1 vs. uniprot
Match: A0A836CNC1_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNC1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.010e-20
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   31 EPYMCNLAVEKSYRGKGLGRQLVRLCEHVAKNHWGYKRMYLHVDLDDPAAMGLYSSMGYESITQYDT-PVWIRRLLGMPTIRYQVKQLR 294
            EPY+CNLAV + +RG+G+G+QLVRL EH+ +N W    +YLHVD  +  A+ LY SMGY       T P W+  LL +P + Y  K LR
Sbjct:  158 EPYLCNLAVSERWRGQGIGKQLVRLSEHIVRNCWAGSCLYLHVDPSNEIALQLYQSMGYRPAAPTHTLPPWLLSLLAVPQVTYFSKSLR 246          
BLAST of mRNA_H-elongata_contig58831.13382.1 vs. uniprot
Match: A0A448ZI05_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZI05_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.610e-19
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   31 EPYMCNLAVEKSYRGKGLGRQLVRLCEHVAKNHWGYKRMYLHVDLDDPAAMGLYSSMGYESITQYDTPVWIRRLLGMPTIRYQVKQL 291
            +PY+ NL V++ +RG+ +GR LVR  E++AKN WGY RMYLHVD D+PAA+ LY S GY  +     P W     G   I Y VK L
Sbjct:  253 QPYLSNLCVDEKFRGQKIGRGLVRCVENIAKNSWGYNRMYLHVDEDNPAALNLYKSEGYSDVGHRWNPFWSG---GASEIGYYVKSL 336          
BLAST of mRNA_H-elongata_contig58831.13382.1 vs. uniprot
Match: A0A7S4AXY7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AXY7_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.470e-17
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   31 EPYMCNLAVEKSYRGKGLGRQLVRLCEHVAKNHWGYKRMYLHVDLDDPAAMGLYSSMGYESITQYDTPVWIRRLLGMPTIRYQVKQL 291
            +PY+ NL V++ +RG+ +GR LVR  E+VAKN WGY R+YLHVD D+ AA+ LY S GY  +     P W     G   I Y VK L
Sbjct:  282 QPYLSNLCVDEKFRGQKIGRGLVRCIENVAKNSWGYNRIYLHVDEDNIAALNLYKSEGYRDVGHRWNPFWSG---GASEIGYYVKSL 365          
BLAST of mRNA_H-elongata_contig58831.13382.1 vs. uniprot
Match: B7FSR9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSR9_PHATC)

HSP 1 Score: 81.6 bits (200), Expect = 5.450e-16
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   31 EPYMCNLAVEKSYRGKGLGRQLVRLCEHVAKNHWGYKRMYLHVDLDDPAAMGLYSSMGYESITQYDTPVWIRRLLGMPTIRYQVKQL 291
            +PY+ NL V + YRG+G+GR LVR  E ++K  WGY R+YLHVD D+ AA+ LY   GY  +     P W  + +    I Y VK L
Sbjct:  256 QPYLGNLCVAERYRGRGIGRALVRCVEDISKTKWGYSRIYLHVDKDNAAALNLYQEEGYRDVGLRWKPFWAGKAVD---IGYYVKGL 339          
BLAST of mRNA_H-elongata_contig58831.13382.1 vs. uniprot
Match: A0A7S2EB23_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EB23_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 8.470e-15
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   22 KRWEPYMCNLAVEKSYRGKGLGRQLVRLCEHVAKNHWGYKRMYLHVDLDDPAAMGLYSSMGYESITQYDTPVW 240
            K  +PY+CNL V +  RG+ LG+ LVR  E +    WGY ++YLHVDLD+ AA+ LY S G++ +     P W
Sbjct:  259 KTLQPYLCNLCVSEQMRGRKLGKALVRCVEKITTETWGYSKLYLHVDLDNVAALNLYRSEGFKDVGFRWNPFW 331          
BLAST of mRNA_H-elongata_contig58831.13382.1 vs. uniprot
Match: A0A1U7I2R3_9CYAN (N-acetyltransferase domain-containing protein n=2 Tax=Phormidium ambiguum TaxID=71191 RepID=A0A1U7I2R3_9CYAN)

HSP 1 Score: 71.6 bits (174), Expect = 5.340e-13
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   34 PYMCNLAVEKSYRGKGLGRQLVRLCEHVAKNHWGYKRMYLHVDLDDPAAMGLYSSMGYESITQYDTPVWIRRLLGMP 264
            PY+ N+AV+ SYR +G+ RQL+  CE +A N WGY+ +YLHV  ++  A GLYS +GY  + Q D+  W   LLG P
Sbjct:  130 PYLSNVAVQSSYRRRGIARQLLLACEQIALN-WGYQDLYLHVLENNHKARGLYSQLGYR-LHQVDSN-WACFLLGKP 203          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58831.13382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVP4_ECTSI8.190e-4565.71N-acetyltransferase domain-containing protein n=2 ... [more]
D7FVP3_ECTSI5.690e-3865.56N-acetyltransferase domain-containing protein n=1 ... [more]
A0A6H5KVK2_9PHAE7.900e-3665.56N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S2GAU2_9STRA1.300e-2043.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CNC1_9STRA2.010e-2048.31N-acetyltransferase domain-containing protein n=1 ... [more]
A0A448ZI05_9STRA1.610e-1949.43N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S4AXY7_9STRA1.470e-1748.28Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
B7FSR9_PHATC5.450e-1644.83Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2EB23_9STRA8.470e-1545.21Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A1U7I2R3_9CYAN5.340e-1348.05N-acetyltransferase domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58831contigH-elongata_contig58831:162..716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.7e-36
Seed eggNOG ortholog2880.D7FVP4
EggNOG free text desc.Acetyltransferase (GNAT) family
EggNOG OGs2CZCN@1,2S9Q8@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.5490036-CDS-H-elongata_contig58831:161..2951622930954.5490036-CDS-H-elongata_contig58831:161..295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58831 162..295 +
1691679639.0170293-CDS-H-elongata_contig58831:161..2951691679639.0170293-CDS-H-elongata_contig58831:161..295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58831 162..295 +
1622930954.5675485-CDS-H-elongata_contig58831:523..7161622930954.5675485-CDS-H-elongata_contig58831:523..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58831 524..716 +
1691679639.0312076-CDS-H-elongata_contig58831:523..7161691679639.0312076-CDS-H-elongata_contig58831:523..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58831 524..716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58831.13382.1prot_H-elongata_contig58831.13382.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58831 162..716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58831.13382.1

>prot_H-elongata_contig58831.13382.1 ID=prot_H-elongata_contig58831.13382.1|Name=mRNA_H-elongata_contig58831.13382.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
WSDQDPVKRWEPYMCNLAVEKSYRGKGLGRQLVRLCEHVAKNHWGYKRMY
LHVDLDDPAAMGLYSSMGYESITQYDTPVWIRRLLGMPTIRYQVKQLRFQ
RRATRLLS*
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mRNA from alignment at H-elongata_contig58831:162..716+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58831.13382.1 ID=mRNA_H-elongata_contig58831.13382.1|Name=mRNA_H-elongata_contig58831.13382.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=555bp|location=Sequence derived from alignment at H-elongata_contig58831:162..716+ (Himanthalia elongata Himel1 dioecious)
TGGTCGGACCAGGATCCAGTCAAAAGATGGGAGCCCTACATGTGTAATCT CGCTGTCGAGAAGAGCTACAGAGGGAAAGGACTTGGGAGGCAGCTGGTGC GGCTTTGCGAGCACGTGGCGAAGAATCATTGGGGGTGAGAGCGTTGCCTC ACCGATATCTAGCCTGGAAATGTGCCTGCTTGGGGAATTTCAAGCGATTC ACGACCGTGTAACAACGTTGGTCGTTATTGGTCGGCGGTACTTTAATGGG TGGGCGGCACTACTCCTTTGGACAGCCAATGATGCAGCGCCTCTATCGCT CTCACACCAACCCGTCCCTCCTTATGAACCCTATATGAACGCCACTCGGA GTTGCCCACCAGGTACAAACGCATGTACCTGCACGTTGACCTCGACGACC CCGCTGCGATGGGACTGTACTCCTCCATGGGGTACGAGAGCATTACGCAG TACGACACTCCCGTCTGGATAAGGAGACTCCTCGGCATGCCTACGATTAG ATATCAAGTCAAACAACTCCGATTTCAACGGCGCGCAACACGTCTCCTGT CATGA
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Coding sequence (CDS) from alignment at H-elongata_contig58831:162..716+

>mRNA_H-elongata_contig58831.13382.1 ID=mRNA_H-elongata_contig58831.13382.1|Name=mRNA_H-elongata_contig58831.13382.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig58831:162..716+ (Himanthalia elongata Himel1 dioecious)
TGGTCGGACCAGGATCCAGTCAAAAGATGGGAGCCCTACATGTGTAATCT
CGCTGTCGAGAAGAGCTACAGAGGGAAAGGACTTGGGAGGCAGCTGGTGC
GGCTTTGCGAGCACGTGGCGAAGAATCATTGGGGTGGTCGGACCAGGATC
CAGTCAAAAGATGGGAGCCCTACATGTGTAATCTCGCTGTCGAGAAGAGC
TACAGAGGGAAAGGACTTGGGAGGCAGCTGGTGCGGCTTTGCGAGCACGT
GGCGAAGAATCATTGGGGGTACAAACGCATGTACCTGCACGTTGACCTCG
ACGACCCCGCTGCGATGGGACTGTACTCCTCCATGGGGTACGAGAGCATT
ACGCAGTACGACACTCCCGTCTGGATAAGGAGACTCCTCGGCATGCCTAC
GATTAGATATCAAGTCAAACAACTCCGATTTCAACGGCGCGCAACACGTC
TCCTGTCATGAGTACAAACGCATGTACCTGCACGTTGACCTCGACGACCC
CGCTGCGATGGGACTGTACTCCTCCATGGGGTACGAGAGCATTACGCAGT
ACGACACTCCCGTCTGGATAAGGAGACTCCTCGGCATGCCTACGATTAGA
TATCAAGTCAAACAACTCCGATTTCAACGGCGCGCAACACGTCTCCTGTC
ATGA
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