mRNA_H-elongata_contig58787.13374.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58787.13374.1
Unique NamemRNA_H-elongata_contig58787.13374.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58787.13374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58787contigH-elongata_contig58787:1565..2734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size313
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930953.4820704-CDS-H-elongata_contig58787:1564..16181622930953.4820704-CDS-H-elongata_contig58787:1564..1618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58787 1565..1618 +
1691679638.6122453-CDS-H-elongata_contig58787:1564..16181691679638.6122453-CDS-H-elongata_contig58787:1564..1618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58787 1565..1618 +
1622930953.5066624-CDS-H-elongata_contig58787:2477..27321622930953.5066624-CDS-H-elongata_contig58787:2477..2732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58787 2478..2732 +
1691679638.6200545-CDS-H-elongata_contig58787:2477..27321691679638.6200545-CDS-H-elongata_contig58787:2477..2732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58787 2478..2732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58787.13374.1prot_H-elongata_contig58787.13374.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58787 1565..2732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58787.13374.1

>prot_H-elongata_contig58787.13374.1 ID=prot_H-elongata_contig58787.13374.1|Name=mRNA_H-elongata_contig58787.13374.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
YEEDPAIGQHRQHRCLTEMSPPGSVDTSDANFGDCDKRFEVDWPHTSPSA
PHLRRGSLMKHLSDMDPHLRGTPDSFSSFDMDEDDPPAAAAAAAVTTMET
ALA
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mRNA from alignment at H-elongata_contig58787:1565..2734+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58787.13374.1 ID=mRNA_H-elongata_contig58787.13374.1|Name=mRNA_H-elongata_contig58787.13374.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1170bp|location=Sequence derived from alignment at H-elongata_contig58787:1565..2734+ (Himanthalia elongata Himel1 dioecious)
TACGAAGAGGACCCCGCCATTGGCCAGCATCGACAGCATCGCTGCCTGAC
AGAGGTGAGACAGTAAGGTCAGCGGTAGGATCGAAGCCGAAATCGATCTA
GTGCCTCGGGCCCCGGAGAGCAAACCCAACCAAACACTGTAATAGCTAAA
AGAAGACATATACATCGTTGAGCTGGGCCCCTGGAAATCCAGTACACACG
CAGAAGCGAGAACGTTCGTTTTACTCAACTGTAAGATTTCTTTGGGAGTT
TCTTTTGAGTGTCCCTCTATTTCTCCCTCTCATCCGAGCCTCGGTTAGTG
CGCTATCCAGAATATAGTGACTTATGATCGCCGTGGGCTGGCCGCTTTTT
GGTCACGTCATGGTGGGTGGCGATCGGATGATAAGATTAAAGTAGAGGAC
GGGGGCGGGAATAGGGATAGGGGCAGGCACACCAAAGTAGAGAGACACAT
ACACAAAATCTTGAAAACAGACGGCCAAGATACGCTCGAGAAATTAAGAG
ATAGGCAGACAGGGTAATTCAACCTTTTCCATGTTGACGAGCTCCAATTC
GTGTGCGTACCTGATTTACCATTTTACCACTCATTTCCAAGGACCCAACC
CAGCGATGTGCGGCTTTGAGTTTCCCTCTGGCGCCTGAGGCCCTGGGCTT
TTTCCTCGTACTATATTTATCGTGTAAATTTCCTGGTGCCCTACGATACA
AACTCGCTTGAATCGCCTCTTTGTGGGGTTTCACTCGCTAGCAGGCGTTT
TTTGCTGTCGAGGGGGGTTACGTTGGAGACCTCTTCCCATCGTCTTCGAC
TCGAAGGAAAGCTAATTTTTTCCCCCACTACGCTGCAAGATCGCTAAAAA
TACCCATTAACTCCCTATCCCCTTCCTCCTCTTGTACACGCGGTGTTTCG
GATTTGAGAACAGATGTCGCCACCGGGAAGCGTCGACACCAGCGATGCCA
ACTTCGGCGACTGTGACAAACGTTTCGAGGTCGACTGGCCGCACACCTCG
CCCTCTGCCCCGCACTTACGGCGGGGATCCTTGATGAAGCATCTTTCCGA
CATGGACCCCCACCTGAGGGGAACGCCCGACAGCTTTTCTTCGTTTGACA
TGGATGAGGACGACCCGCCTGCTGCTGCTGCTGCTGCTGCGGTGACAACG
ATGGAGACGGCACTGGCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig58787:1565..2734+

>mRNA_H-elongata_contig58787.13374.1 ID=mRNA_H-elongata_contig58787.13374.1|Name=mRNA_H-elongata_contig58787.13374.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig58787:1565..2734+ (Himanthalia elongata Himel1 dioecious)
TACGAAGAGGACCCCGCCATTGGCCAGCATCGACAGCATCGCTGCCTGAC
AGAGTACGAAGAGGACCCCGCCATTGGCCAGCATCGACAGCATCGCTGCC
TGACAGAGATGTCGCCACCGGGAAGCGTCGACACCAGCGATGCCAACTTC
GGCGACTGTGACAAACGTTTCGAGGTCGACTGGCCGCACACCTCGCCCTC
TGCCCCGCACTTACGGCGGGGATCCTTGATGAAGCATCTTTCCGACATGG
ACCCCCACCTGAGGGGAACGCCCGACAGCTTTTCTTCGTTTGACATGGAT
GAGGACGACCCGCCTGCTGCTGCTGCTGCTGCTGCGGTGACAACGATGGA
GACGGCACTGGCGATGTCGCCACCGGGAAGCGTCGACACCAGCGATGCCA
ACTTCGGCGACTGTGACAAACGTTTCGAGGTCGACTGGCCGCACACCTCG
CCCTCTGCCCCGCACTTACGGCGGGGATCCTTGATGAAGCATCTTTCCGA
CATGGACCCCCACCTGAGGGGAACGCCCGACAGCTTTTCTTCGTTTGACA
TGGATGAGGACGACCCGCCTGCTGCTGCTGCTGCTGCTGCGGTGACAACG
ATGGAGACGGCACTGGCG
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