mRNA_H-elongata_contig117104.1337.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig117104.1337.1 vs. uniprot
Match: A0A6H5KTD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD1_9PHAE) HSP 1 Score: 182 bits (461), Expect = 2.100e-52 Identity = 87/122 (71.31%), Postives = 104/122 (85.25%), Query Frame = 1
Query: 1 DQVAASGGYMMACVADWLIAAPFAMLGSIGVVGGIPNFNKALKKAGIEYFHFTAGQQKSLMGPFQEVTKANQVMQQRQIDSVHTAFKRHVGRYRPAADMEEVGTGEVWLGLDAVKHRLVDEV 366
D+VAASGGYMMAC+AD L APFAMLGSIGVVGG+ NFNKALKK G++YF FT+GQ KSL+GPFQEVTK N+ MQQ+Q+D++HTAFK HV RYRP+ D+E VGTGE+WLG AV+ L D+V
Sbjct: 237 DKVAASGGYMMACIADELTTAPFAMLGSIGVVGGMANFNKALKKYGVDYFQFTSGQHKSLVGPFQEVTKENKAMQQKQMDAIHTAFKTHVHRYRPSVDIEAVGTGEIWLGQRAVEMHLADKV 358
BLAST of mRNA_H-elongata_contig117104.1337.1 vs. uniprot
Match: D7G353_ECTSI (Putative periplasmic protease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G353_ECTSI) HSP 1 Score: 183 bits (464), Expect = 3.480e-51 Identity = 87/122 (71.31%), Postives = 105/122 (86.07%), Query Frame = 1
Query: 1 DQVAASGGYMMACVADWLIAAPFAMLGSIGVVGGIPNFNKALKKAGIEYFHFTAGQQKSLMGPFQEVTKANQVMQQRQIDSVHTAFKRHVGRYRPAADMEEVGTGEVWLGLDAVKHRLVDEV 366
D+VAASGGYM+AC+AD L APFAMLGSIGVVGG+ NFNKALKK G++YFHFT+GQ KSL+GPFQEVTK N+ MQQ+Q+D++H+AFK HV RYRP+ D+E VGTGE+WLG AV RL D+V
Sbjct: 609 DKVAASGGYMIACIADELTTAPFAMLGSIGVVGGMTNFNKALKKYGVDYFHFTSGQHKSLVGPFQEVTKENKAMQQKQMDAIHSAFKTHVHRYRPSVDIEAVGTGEIWLGQRAVDMRLADKV 730
BLAST of mRNA_H-elongata_contig117104.1337.1 vs. uniprot
Match: A0A369KPC3_9PROT (Protease SohB n=1 Tax=Spirobacillus cienkowskii TaxID=495820 RepID=A0A369KPC3_9PROT) HSP 1 Score: 137 bits (344), Expect = 1.240e-36 Identity = 66/125 (52.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query: 1 DQVAASGGYMMACVADWLIAAPFAMLGSIGVVGGIPNFNKALKKAGIEYFHFTAGQQKSLMGPFQEVTKANQVMQQRQIDSVHTAFKRHVGRYRPAADMEEVGTGEVWLGLDAVKHRLVDEVGRS 375
D++AASGGYMMAC+AD +IAAPFA++GSIGV+ +PN NK L K IEY TAG+ K + P E+T+ + Q QID VH FK HV RYRP D++ V TGE W G+ A+ +L+DE+ S
Sbjct: 171 DKIAASGGYMMACLADKIIAAPFAIIGSIGVIASMPNLNKLLHKNDIEYLEITAGEYKRTLTPLGEITEKKKAKFQEQIDEVHMLFKNHVQRYRPTLDIDTVATGEYWYGIQALDLQLIDELKTS 295
BLAST of mRNA_H-elongata_contig117104.1337.1 vs. uniprot
Match: A0A7V1FTF3_9GAMM (Protease SohB n=2 Tax=root TaxID=1 RepID=A0A7V1FTF3_9GAMM) HSP 1 Score: 135 bits (341), Expect = 2.760e-36 Identity = 68/125 (54.40%), Postives = 90/125 (72.00%), Query Frame = 1
Query: 1 DQVAASGGYMMACVADWLIAAPFAMLGSIGVVGGIPNFNKALKKAGIEYFHFTAGQQKSLMGPFQEVTKANQVMQQRQIDSVHTAFKRHVGRYRPAADMEEVGTGEVWLGLDAVKHRLVDEVGRS 375
D+VAASGGYMMAC+AD ++AAPFAMLGSIGVV IPNFN+ L+K I+Y TAG+ K + F E ++ + Q ++++H FK VGRYRP+ D+E V TGEVW GL+AV ++L DE+ S
Sbjct: 162 DKVAASGGYMMACIADRILAAPFAMLGSIGVVAQIPNFNRILRKHDIDYEMLTAGEYKRTLTLFGENSEKGREKFQEDLENIHRLFKGFVGRYRPSLDVEAVATGEVWFGLEAVDNQLADEIKTS 286
BLAST of mRNA_H-elongata_contig117104.1337.1 vs. uniprot
Match: A0A1L4CZ36_9PROT (Protease SohB n=1 Tax=Silvanigrella aquatica TaxID=1915309 RepID=A0A1L4CZ36_9PROT) HSP 1 Score: 135 bits (341), Expect = 3.750e-36 Identity = 66/122 (54.10%), Postives = 86/122 (70.49%), Query Frame = 1
Query: 1 DQVAASGGYMMACVADWLIAAPFAMLGSIGVVGGIPNFNKALKKAGIEYFHFTAGQQKSLMGPFQEVTKANQVMQQRQIDSVHTAFKRHVGRYRPAADMEEVGTGEVWLGLDAVKHRLVDEV 366
D+VAASGGYMMAC+AD +IAAPFA++GSIGV+ +PN NK L K IEY TAG+ K + P E+T+ + Q QI+ VHT FK HV +YR D++ V TGE W GL A++ +LVDE+
Sbjct: 175 DKVAASGGYMMACLADKIIAAPFAIIGSIGVIASLPNLNKLLNKNDIEYLEITAGEYKRTLTPLGEITEKKKAKFQEQIEDVHTLFKNHVQKYRNTVDLDVVATGEYWYGLKALELKLVDEL 296
BLAST of mRNA_H-elongata_contig117104.1337.1 vs. uniprot
Match: UPI0019C3D4D1 (Protease SohB n=1 Tax=Bdellovibrionaceae bacterium TaxID=2026715 RepID=UPI0019C3D4D1) HSP 1 Score: 132 bits (332), Expect = 4.680e-36 Identity = 64/125 (51.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query: 1 DQVAASGGYMMACVADWLIAAPFAMLGSIGVVGGIPNFNKALKKAGIEYFHFTAGQQKSLMGPFQEVTKANQVMQQRQIDSVHTAFKRHVGRYRPAADMEEVGTGEVWLGLDAVKHRLVDEVGRS 375
D+VAASGGYMMAC A +I+APFA++GSIGVV +PNFN+ALKK I+Y +TAG K + F E+T+ + Q+++ H FK VG+YRP ++++V TGE W G DA+K +LVD++G S
Sbjct: 54 DKVAASGGYMMACTAHKIISAPFAIVGSIGVVAQLPNFNRALKKHDIDYKEYTAGDFKRTVSLFGEITEKGEKKFIEQLEATHVLFKNFVGKYRPQLNIDQVATGEYWFGEDAIKLKLVDQIGTS 178
BLAST of mRNA_H-elongata_contig117104.1337.1 vs. uniprot
Match: A0A432W536_9GAMM (Protease SohB n=1 Tax=Aliidiomarina minuta TaxID=880057 RepID=A0A432W536_9GAMM) HSP 1 Score: 135 bits (339), Expect = 5.040e-36 Identity = 68/125 (54.40%), Postives = 88/125 (70.40%), Query Frame = 1
Query: 1 DQVAASGGYMMACVADWLIAAPFAMLGSIGVVGGIPNFNKALKKAGIEYFHFTAGQQKSLMGPFQEVTKANQVMQQRQIDSVHTAFKRHVGRYRPAADMEEVGTGEVWLGLDAVKHRLVDEVGRS 375
D+VAASGGYMMACVAD ++AAPFA+LGSIGV+ +PNFNK LKK I+Y TAG+ K + F E T+ + Q+ ID VH FK VG +RP DM++V TGE+W G A++ +LVDE+ S
Sbjct: 159 DKVAASGGYMMACVADKVVAAPFAILGSIGVLAQLPNFNKLLKKNDIDYEQITAGEYKRTLTLFGENTEDGRKKFQQDIDDVHVLFKNFVGEHRPQLDMDKVATGEIWFGTQALEQKLVDEIMTS 283
BLAST of mRNA_H-elongata_contig117104.1337.1 vs. uniprot
Match: UPI001D0052C2 (protease SohB n=1 Tax=Gallaecimonas mangrovi TaxID=2291597 RepID=UPI001D0052C2) HSP 1 Score: 134 bits (338), Expect = 5.500e-36 Identity = 67/125 (53.60%), Postives = 89/125 (71.20%), Query Frame = 1
Query: 1 DQVAASGGYMMACVADWLIAAPFAMLGSIGVVGGIPNFNKALKKAGIEYFHFTAGQQKSLMGPFQEVTKANQVMQQRQIDSVHTAFKRHVGRYRPAADMEEVGTGEVWLGLDAVKHRLVDEVGRS 375
D+VAASGGYMMACV D ++AAPFAMLGSIGV+ GIPN +K LKK I+Y TAG+ K + E T+ + ++ +H F+RHVG+YRPA D++ V TGEVWLG+DA++ L+DE+ S
Sbjct: 158 DKVAASGGYMMACVGDRIMAAPFAMLGSIGVIAGIPNLHKVLKKHDIDYEQHTAGKFKRTLSMLGENTEEGREKFVADLNVIHGHFRRHVGQYRPALDVDAVATGEVWLGVDALEKGLIDEIATS 282
BLAST of mRNA_H-elongata_contig117104.1337.1 vs. uniprot
Match: A0A6C0TWS8_9PSED (Protease SohB n=4 Tax=Pseudomonas TaxID=286 RepID=A0A6C0TWS8_9PSED) HSP 1 Score: 134 bits (338), Expect = 7.700e-36 Identity = 68/125 (54.40%), Postives = 87/125 (69.60%), Query Frame = 1
Query: 1 DQVAASGGYMMACVADWLIAAPFAMLGSIGVVGGIPNFNKALKKAGIEYFHFTAGQQKSLMGPFQEVTKANQVMQQRQIDSVHTAFKRHVGRYRPAADMEEVGTGEVWLGLDAVKHRLVDEVGRS 375
D+VAASGGYMMAC+ D ++AAPFAMLGSIGVV IPNFNK L+K ++Y TAG+ K + F E T + Q ++S+H FK VGRYRP D+E V TGEVW GL+A+++ L DE+ S
Sbjct: 162 DKVAASGGYMMACIGDRILAAPFAMLGSIGVVAQIPNFNKLLRKHDVDYEMLTAGEYKRTLTIFGENTDKGREKFQEDLESIHRLFKDFVGRYRPILDIESVATGEVWFGLEALENALADELKTS 286
BLAST of mRNA_H-elongata_contig117104.1337.1 vs. uniprot
Match: UPI001EF54694 (protease SohB n=1 Tax=Psychrobium sp. MM17-31 TaxID=2917758 RepID=UPI001EF54694) HSP 1 Score: 134 bits (337), Expect = 1.060e-35 Identity = 68/125 (54.40%), Postives = 88/125 (70.40%), Query Frame = 1
Query: 1 DQVAASGGYMMACVADWLIAAPFAMLGSIGVVGGIPNFNKALKKAGIEYFHFTAGQQKSLMGPFQEVTKANQVMQQRQIDSVHTAFKRHVGRYRPAADMEEVGTGEVWLGLDAVKHRLVDEVGRS 375
D+VAASGGYMMAC+AD ++AAPFA++GSIGV+ IPNFNK LKK I++ TAGQ K + F E T+ ++ Q +ID VH FK HV ++RPA DM++V TGE W G A+ LVDE+ S
Sbjct: 161 DKVAASGGYMMACIADKIVAAPFAIIGSIGVIAQIPNFNKVLKKNDIDFEQVTAGQYKRTLTMFGENTEQDREKFQSEIDDVHGLFKDHVAKHRPALDMDKVATGETWYGEQAIDIGLVDELSTS 285 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117104.1337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig117104.1337.1 >prot_H-elongata_contig117104.1337.1 ID=prot_H-elongata_contig117104.1337.1|Name=mRNA_H-elongata_contig117104.1337.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp MMACVADWLIAAPFAMLGSIGVVGGIPNFNKALKKAGIEYFHFTAGQQKSback to top mRNA from alignment at H-elongata_contig117104:217..1767- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig117104.1337.1 ID=mRNA_H-elongata_contig117104.1337.1|Name=mRNA_H-elongata_contig117104.1337.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1551bp|location=Sequence derived from alignment at H-elongata_contig117104:217..1767- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig117104:217..1767- >mRNA_H-elongata_contig117104.1337.1 ID=mRNA_H-elongata_contig117104.1337.1|Name=mRNA_H-elongata_contig117104.1337.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig117104:217..1767- (Himanthalia elongata Himel1 dioecious)back to top |