prot_H-elongata_contig58724.13367.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig58724.13367.1
Unique Nameprot_H-elongata_contig58724.13367.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length538
Homology
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BLAST of mRNA_H-elongata_contig58724.13367.1 vs. uniprot
Match: A0A6H5LBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBM3_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 8.020e-5
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 0 
Query:    1 MINIHN-RECSSYGCFQRPKYGVAGSKKAEYCKVHALQGMI 40
            M++IHN R C+   C + P YGV G++KAE+C  HAL GM+
Sbjct:    8 MVDIHNIRRCAHEDCVKHPTYGVPGTRKAEFCAPHALDGMV 48
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58724.13367.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBM3_9PHAE8.020e-551.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58724contigH-elongata_contig58724:1478..3091 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58724.13367.1mRNA_H-elongata_contig58724.13367.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig58724 1385..3696 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig58724.13367.1 ID=prot_H-elongata_contig58724.13367.1|Name=mRNA_H-elongata_contig58724.13367.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=538bp
MINIHNRECSSYGCFQRPKYGVAGSKKAEYCKVHALQGMIDVANKICAED
GCVKRPSYGVAESKEAEFCPVHALEGMINLHNKECASFGCLQRPKYGVAG
SKKAEYCKVHSLGGMINVANKMCAKDGCFKCPSYGVEGSKKAEYCAVHAL
KDMIDIVSKRCAKDGCFKSPRFGVTGSKKAEYCAVHSLEGMIDVANKRCA
KDGCSKRPSYGVADSKEAEFCAVHALEGMINVLNKECASYGCSQRPRYGV
AGSKKAEYCAVHSLDGMINVASKRCAEDGCFKYSSYGLSGRMKAEFCAVH
ALEGMINVSNKKCGDRYVKHPSCSMADSKETKYGDVHASEWRIDVTSKSC
SSDGSCMSLGYDVAVSETLESYVAHDLEKMADVAYTRCASDVFCKRPRYD
PFGRIKPEYCNEYAVNGMITVGKLDSGDGCKAERRSAVDDHDFIDSKIHC
FGNGCWRSASDRVAGSAMQENCPKIASEGMDFSTVENQFKTKKETFETSV
PGVSVLQREITTKFKRSFHNVVSDSERVKIDVSLSIA*
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