mRNA_H-elongata_contig58724.13367.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58724.13367.1
Unique NamemRNA_H-elongata_contig58724.13367.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58724.13367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58724contigH-elongata_contig58724:1385..3696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2312
Cds size1614
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58724.13367.1prot_H-elongata_contig58724.13367.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58724 1478..3091 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930952.1444216-UTR-H-elongata_contig58724:1384..14771622930952.1444216-UTR-H-elongata_contig58724:1384..1477Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58724 1385..1477 +
1691679638.1331182-UTR-H-elongata_contig58724:1384..14771691679638.1331182-UTR-H-elongata_contig58724:1384..1477Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58724 1385..1477 +
1622930952.2142148-UTR-H-elongata_contig58724:3091..36961622930952.2142148-UTR-H-elongata_contig58724:3091..3696Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58724 3092..3696 +
1691679638.1528635-UTR-H-elongata_contig58724:3091..36961691679638.1528635-UTR-H-elongata_contig58724:3091..3696Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58724 3092..3696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930952.1940358-CDS-H-elongata_contig58724:1477..30911622930952.1940358-CDS-H-elongata_contig58724:1477..3091Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58724 1478..3091 +
1691679638.1430352-CDS-H-elongata_contig58724:1477..30911691679638.1430352-CDS-H-elongata_contig58724:1477..3091Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58724 1478..3091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58724.13367.1

>prot_H-elongata_contig58724.13367.1 ID=prot_H-elongata_contig58724.13367.1|Name=mRNA_H-elongata_contig58724.13367.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=538bp
MINIHNRECSSYGCFQRPKYGVAGSKKAEYCKVHALQGMIDVANKICAED
GCVKRPSYGVAESKEAEFCPVHALEGMINLHNKECASFGCLQRPKYGVAG
SKKAEYCKVHSLGGMINVANKMCAKDGCFKCPSYGVEGSKKAEYCAVHAL
KDMIDIVSKRCAKDGCFKSPRFGVTGSKKAEYCAVHSLEGMIDVANKRCA
KDGCSKRPSYGVADSKEAEFCAVHALEGMINVLNKECASYGCSQRPRYGV
AGSKKAEYCAVHSLDGMINVASKRCAEDGCFKYSSYGLSGRMKAEFCAVH
ALEGMINVSNKKCGDRYVKHPSCSMADSKETKYGDVHASEWRIDVTSKSC
SSDGSCMSLGYDVAVSETLESYVAHDLEKMADVAYTRCASDVFCKRPRYD
PFGRIKPEYCNEYAVNGMITVGKLDSGDGCKAERRSAVDDHDFIDSKIHC
FGNGCWRSASDRVAGSAMQENCPKIASEGMDFSTVENQFKTKKETFETSV
PGVSVLQREITTKFKRSFHNVVSDSERVKIDVSLSIA*
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mRNA from alignment at H-elongata_contig58724:1385..3696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58724.13367.1 ID=mRNA_H-elongata_contig58724.13367.1|Name=mRNA_H-elongata_contig58724.13367.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2312bp|location=Sequence derived from alignment at H-elongata_contig58724:1385..3696+ (Himanthalia elongata Himel1 dioecious)
ATATGTGCTAAGGATGGATGCTCTAAGCGTCCGAGTTATGGCGTGGCTGA
CAGCAACGAGGCCGAATTTTGCGCGGTGCATGCTTTGGAAGGGATGATCA
ACATTCATAACAGGGAATGTTCTAGCTATGGATGCTTTCAGCGTCCGAAG
TATGGCGTTGCAGGCAGCAAAAAAGCGGAATACTGCAAAGTGCATGCTTT
GCAAGGAATGATCGACGTTGCGAACAAGATATGTGCTGAGGATGGATGCG
TTAAGCGTCCGAGTTATGGCGTGGCTGAAAGCAAGGAAGCTGAATTTTGC
CCGGTGCATGCTTTAGAAGGGATGATCAACCTTCATAACAAGGAGTGTGC
TAGCTTTGGATGCTTGCAGCGTCCGAAGTATGGCGTAGCAGGCAGCAAAA
AAGCAGAATACTGCAAAGTGCATTCTTTGGGAGGGATGATCAACGTTGCT
AACAAGATGTGTGCTAAGGATGGGTGCTTTAAGTGTCCGAGTTATGGCGT
AGAAGGCAGCAAGAAAGCGGAATACTGCGCGGTGCATGCTCTAAAAGATA
TGATCGACATTGTGTCCAAGAGATGTGCTAAGGATGGGTGTTTTAAGAGC
CCAAGGTTTGGCGTAACTGGCAGCAAAAAAGCGGAATACTGCGCAGTGCA
TTCTTTGGAAGGGATGATCGACGTTGCGAACAAGAGATGTGCTAAAGATG
GATGCTCTAAGCGTCCGAGTTATGGCGTGGCTGACAGCAAGGAAGCCGAA
TTTTGCGCGGTGCATGCTTTGGAAGGGATGATCAACGTTCTTAACAAGGA
GTGTGCTAGCTATGGATGCTCTCAGCGTCCTAGGTATGGCGTAGCAGGCA
GCAAAAAAGCAGAATACTGCGCAGTGCATTCTTTGGATGGGATGATTAAC
GTTGCGAGCAAGCGATGTGCTGAGGATGGATGCTTTAAATATTCGAGTTA
TGGCTTGTCCGGTAGGATGAAAGCAGAATTCTGCGCGGTGCATGCTTTGG
AAGGGATGATCAACGTTTCGAACAAGAAATGTGGTGACAGATACGTTAAG
CATCCGAGCTGTAGCATGGCCGACAGCAAGGAAACTAAATACGGCGACGT
ACATGCTTCGGAATGGAGGATCGACGTTACGAGCAAGAGTTGTTCTAGCG
ATGGAAGCTGTATGTCACTTGGCTATGACGTTGCCGTTAGCGAAACGCTG
GAGTCCTACGTGGCGCATGATTTAGAAAAAATGGCTGACGTTGCATACAC
GAGGTGCGCTAGCGATGTATTCTGTAAGCGACCGAGATATGACCCTTTTG
GTAGGATCAAGCCGGAGTACTGTAACGAGTATGCTGTGAATGGAATGATC
ACCGTTGGAAAATTGGATTCCGGCGATGGATGCAAGGCGGAAAGACGTTC
TGCAGTTGACGATCATGATTTTATTGATTCCAAGATACATTGCTTCGGCA
ACGGATGCTGGAGGAGCGCGAGTGACCGTGTTGCGGGCAGCGCGATGCAG
GAGAATTGCCCAAAAATTGCCTCGGAGGGCATGGATTTTTCGACTGTAGA
AAATCAGTTTAAAACCAAGAAGGAAACGTTCGAGACTTCTGTTCCAGGAG
TATCTGTTTTGCAGAGAGAAATAACAACTAAGTTTAAACGCTCCTTTCAT
AACGTAGTATCAGATTCAGAGAGAGTGAAAATTGATGTGTCCCTGTCTAT
AGCCTAGTAAAAACTTCGTTAAAGTTAAAAGGTACAAAACATCTACTGGA
GACCATGTGGGGTGTTTGATGTCTGGGGCTACGATGCCTCCAGAGCGGTC
TCAATTAGCATGTGGAAACAAGCAGTTGACATGGATTTTTGTTTATAGGG
CGCAGAGGAAGGTAAAGAGGAGCCGCGTTTAGCTTGCGACGATCGACCTT
CCTCGAAGAATTCTAATGGGGTCGTGGGGGTGCTTATCTACGATTTTGTA
CGACTGGCTTGGTTTCGGTGTACGTCTATACGTGGTGAGTTTGTTTTCTG
CATGGATGTACGGATGTTTGTGGGTAGCAGTGGCTTTTACTTGATAAACT
GTGCACAGATGTAACGCTACTTCTTGATAATAGAATCAGCAATTTTTAGC
GGAGCATTCACTAATGTGTGATTGTAAAGAATCGAAAACCTGAAACCCGT
TGATTTTTTGGGGGCATTCACTTGATAATAATGTCTGATTGTAAAGAATC
GAAAACCCGAAACCCGTTCCTTTTTGGGGGGCATTCACGTGATAATAAAG
CCGGTCGCCCCGGTGGTGTAAGGGTCAAGCCGTCTTCCTTGATCCACGGA
AGTAGTGAGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig58724:1385..3696+

>mRNA_H-elongata_contig58724.13367.1 ID=mRNA_H-elongata_contig58724.13367.1|Name=mRNA_H-elongata_contig58724.13367.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3228bp|location=Sequence derived from alignment at H-elongata_contig58724:1385..3696+ (Himanthalia elongata Himel1 dioecious)
ATGATCAACATTCATAACAGGGAATGTTCTAGCTATGGATGCTTTCAGCG
TCCGAAGTATGGCGTTGCAGGCAGCAAAAAAGCGGAATACTGCAAAGTGC
ATGCTTTGCAAGGAATGATCGACGTTGCGAACAAGATATGTGCTGAGGAT
GGATGCGTTAAGCGTCCGAGTTATGGCGTGGCTGAAAGCAAGGAAGCTGA
ATTTTGCCCGGTGCATGCTTTAGAAGGGATGATCAACCTTCATAACAAGG
AGTGTGCTAGCTTTGGATGCTTGCAGCGTCCGAAGTATGGCGTAGCAGGC
AGCAAAAAAGCAGAATACTGCAAAGTGCATTCTTTGGGAGGGATGATCAA
CGTTGCTAACAAGATGTGTGCTAAGGATGGGTGCTTTAAGTGTCCGAGTT
ATGGCGTAGAAGGCAGCAAGAAAGCGGAATACTGCGCGGTGCATGCTCTA
AAAGATATGATCGACATTGTGTCCAAGAGATGTGCTAAGGATGGGTGTTT
TAAGAGCCCAAGGTTTGGCGTAACTGGCAGCAAAAAAGCGGAATACTGCG
CAGTGCATTCTTTGGAAGGGATGATCGACGTTGCGAACAAGAGATGTGCT
AAAGATGGATGCTCTAAGCGTCCGAGTTATGGCGTGGCTGACAGCAAGGA
AGCCGAATTTTGCGCGGTGCATGCTTTGGAAGGGATGATCAACGTTCTTA
ACAAGGAGTGTGCTAGCTATGGATGCTCTCAGCGTCCTAGGTATGGCGTA
GCAGGCAGCAAAAAAGCAGAATACTGCGCAGTGCATTCTTTGGATGGGAT
GATTAACGTTGCGAGCAAGCGATGTGCTGAGGATGGATGCTTTAAATATT
CGAGTTATGGCTTGTCCGGTAGGATGAAAGCAGAATTCTGCGCGGTGCAT
GCTTTGGAAGGGATGATCAACGTTTCGAACAAGAAATGTGGTGACAGATA
CGTTAAGCATCCGAGCTGTAGCATGGCCGACAGCAAGGAAACTAAATACG
GCGACGTACATGCTTCGGAATGGAGGATCGACGTTACGAGCAAGAGTTGT
TCTAGCGATGGAAGCTGTATGTCACTTGGCTATGACGTTGCCGTTAGCGA
AACGCTGGAGTCCTACGTGGCGCATGATTTAGAAAAAATGGCTGACGTTG
CATACACGAGGTGCGCTAGCGATGTATTCTGTAAGCGACCGAGATATGAC
CCTTTTGGTAGGATCAAGCCGGAGTACTGTAACGAGTATGCTGTGAATGG
AATGATCACCGTTGGAAAATTGGATTCCGGCGATGGATGCAAGGCGGAAA
GACGTTCTGCAGTTGACGATCATGATTTTATTGATTCCAAGATACATTGC
TTCGGCAACGGATGCTGGAGGAGCGCGAGTGACCGTGTTGCGGGCAGCGC
GATGCAGGAGAATTGCCCAAAAATTGCCTCGGAGGGCATGGATTTTTCGA
CTGTAGAAAATCAGTTTAAAACCAAGAAGGAAACGTTCGAGACTTCTGTT
CCAGGAGTATCTGTTTTGCAGAGAGAAATAACAACTAAGTTTAAACGCTC
CTTTCATAACGTAGTATCAGATTCAGAGAGAGTGAAAATTGATGTGTCCC
TGTCTATAGCCTAGATGATCAACATTCATAACAGGGAATGTTCTAGCTAT
GGATGCTTTCAGCGTCCGAAGTATGGCGTTGCAGGCAGCAAAAAAGCGGA
ATACTGCAAAGTGCATGCTTTGCAAGGAATGATCGACGTTGCGAACAAGA
TATGTGCTGAGGATGGATGCGTTAAGCGTCCGAGTTATGGCGTGGCTGAA
AGCAAGGAAGCTGAATTTTGCCCGGTGCATGCTTTAGAAGGGATGATCAA
CCTTCATAACAAGGAGTGTGCTAGCTTTGGATGCTTGCAGCGTCCGAAGT
ATGGCGTAGCAGGCAGCAAAAAAGCAGAATACTGCAAAGTGCATTCTTTG
GGAGGGATGATCAACGTTGCTAACAAGATGTGTGCTAAGGATGGGTGCTT
TAAGTGTCCGAGTTATGGCGTAGAAGGCAGCAAGAAAGCGGAATACTGCG
CGGTGCATGCTCTAAAAGATATGATCGACATTGTGTCCAAGAGATGTGCT
AAGGATGGGTGTTTTAAGAGCCCAAGGTTTGGCGTAACTGGCAGCAAAAA
AGCGGAATACTGCGCAGTGCATTCTTTGGAAGGGATGATCGACGTTGCGA
ACAAGAGATGTGCTAAAGATGGATGCTCTAAGCGTCCGAGTTATGGCGTG
GCTGACAGCAAGGAAGCCGAATTTTGCGCGGTGCATGCTTTGGAAGGGAT
GATCAACGTTCTTAACAAGGAGTGTGCTAGCTATGGATGCTCTCAGCGTC
CTAGGTATGGCGTAGCAGGCAGCAAAAAAGCAGAATACTGCGCAGTGCAT
TCTTTGGATGGGATGATTAACGTTGCGAGCAAGCGATGTGCTGAGGATGG
ATGCTTTAAATATTCGAGTTATGGCTTGTCCGGTAGGATGAAAGCAGAAT
TCTGCGCGGTGCATGCTTTGGAAGGGATGATCAACGTTTCGAACAAGAAA
TGTGGTGACAGATACGTTAAGCATCCGAGCTGTAGCATGGCCGACAGCAA
GGAAACTAAATACGGCGACGTACATGCTTCGGAATGGAGGATCGACGTTA
CGAGCAAGAGTTGTTCTAGCGATGGAAGCTGTATGTCACTTGGCTATGAC
GTTGCCGTTAGCGAAACGCTGGAGTCCTACGTGGCGCATGATTTAGAAAA
AATGGCTGACGTTGCATACACGAGGTGCGCTAGCGATGTATTCTGTAAGC
GACCGAGATATGACCCTTTTGGTAGGATCAAGCCGGAGTACTGTAACGAG
TATGCTGTGAATGGAATGATCACCGTTGGAAAATTGGATTCCGGCGATGG
ATGCAAGGCGGAAAGACGTTCTGCAGTTGACGATCATGATTTTATTGATT
CCAAGATACATTGCTTCGGCAACGGATGCTGGAGGAGCGCGAGTGACCGT
GTTGCGGGCAGCGCGATGCAGGAGAATTGCCCAAAAATTGCCTCGGAGGG
CATGGATTTTTCGACTGTAGAAAATCAGTTTAAAACCAAGAAGGAAACGT
TCGAGACTTCTGTTCCAGGAGTATCTGTTTTGCAGAGAGAAATAACAACT
AAGTTTAAACGCTCCTTTCATAACGTAGTATCAGATTCAGAGAGAGTGAA
AATTGATGTGTCCCTGTCTATAGCCTAG
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