mRNA_H-elongata_contig58693.13361.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58693.13361.1
Unique NamemRNA_H-elongata_contig58693.13361.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: D8LQX3_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQX3_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 3.130e-51
Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = 3 
Query:    3 FGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 275
            +GTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREIL+RIRE+EKLD
Sbjct:   53 YGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 143
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BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A835YZE0_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE0_9STRA)

HSP 1 Score: 156 bits (395), Expect = 6.890e-45
Identity = 78/89 (87.64%), Postives = 87/89 (97.75%), Query Frame = 3 
Query:    9 TYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 275
            +YK+IYRRYAGLFFT G+DVNDNELLALETVHLFVELL+SYFSNVCELDIVFNFNKVYNILDEFILSGEV+ES+K EIL+R+RELEKL+
Sbjct:   55 SYKIIYRRYAGLFFTLGVDVNDNELLALETVHLFVELLDSYFSNVCELDIVFNFNKVYNILDEFILSGEVQESAKPEILDRVRELEKLE 143
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BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A7S2CS13_9STRA (AP complex subunit sigma n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CS13_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.350e-41
Identity = 72/89 (80.90%), Postives = 83/89 (93.26%), Query Frame = 3 
Query:    3 FGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEK 269
            F  YKL+YRRYAGLFFT G+DVNDNELL LET+HLFVELL+ YFSNVCELDIVFNFNKVY ILDEFIL+GE++E+SK+EILERI+E+EK
Sbjct:   56 FMNYKLVYRRYAGLFFTIGIDVNDNELLYLETIHLFVELLDQYFSNVCELDIVFNFNKVYGILDEFILAGEIQETSKKEILERIKEVEK 144
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BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A7S3L6S1_9STRA (AP complex subunit sigma n=2 Tax=Bacillariophycidae TaxID=33850 RepID=A0A7S3L6S1_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.500e-39
Identity = 69/91 (75.82%), Postives = 84/91 (92.31%), Query Frame = 3 
Query:    3 FGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 275
            + +YKLIYRRYAGLFFT  +DV DNEL  LET+HLFVELL+SYFSNVCELDIVFNFNKVY+ILDEF+L+GE+EE+SKREIL+R++ LEK++
Sbjct:   63 YNSYKLIYRRYAGLFFTIAVDVTDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEFMLAGELEETSKREILDRVKMLEKME 153
[Close]
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A6T8NVY6_9STRA (AP complex subunit sigma n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8NVY6_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.530e-38
Identity = 68/91 (74.73%), Postives = 82/91 (90.11%), Query Frame = 3 
Query:    3 FGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 275
            +  YKLIYRRYAGLFFT  +D+ DNEL  LET+HLFVELL+SYFSNVCELDIVFNFN+VY ILDEF+L+GE+EE+SKREILER++ +EK+D
Sbjct:   66 YNNYKLIYRRYAGLFFTIAVDMTDNELNYLETIHLFVELLDSYFSNVCELDIVFNFNRVYAILDEFMLAGEIEETSKREILERVKVIEKMD 156
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BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A1Z5K077_FISSO (AP complex subunit sigma n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K077_FISSO)

HSP 1 Score: 140 bits (353), Expect = 1.860e-38
Identity = 67/91 (73.63%), Postives = 84/91 (92.31%), Query Frame = 3 
Query:    3 FGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 275
            +  YKLIYRRYAGLFFT  +DVNDNEL  LET+HLFVELL+SYF+NVCELDIVF+FNKVY+ILDEF+L+GE+EE+SKREIL+R++ L+K++
Sbjct:   61 YNNYKLIYRRYAGLFFTIAVDVNDNELSYLETIHLFVELLDSYFNNVCELDIVFHFNKVYSILDEFMLAGEIEETSKREILDRVKLLDKME 151
[Close]
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A7S0FJC4_9STRA (AP complex subunit sigma n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJC4_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.550e-38
Identity = 67/91 (73.63%), Postives = 83/91 (91.21%), Query Frame = 3 
Query:    3 FGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 275
            + +YKLIYRRYAGLFFT  +D+ DNEL  LET+HLFVELL+SYFSNVCELDIVFNFN+VY ILDE+IL+GE+EE+SK+EIL+R++ LEKL+
Sbjct:   60 YASYKLIYRRYAGLFFTIAVDITDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNRVYMILDEYILAGEIEETSKKEILDRVKVLEKLE 150
[Close]
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: B8C940_THAPS (AP complex subunit sigma (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=B8C940_THAPS)

HSP 1 Score: 139 bits (351), Expect = 2.830e-38
Identity = 67/91 (73.63%), Postives = 83/91 (91.21%), Query Frame = 3 
Query:    3 FGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 275
            +  YKLIYRRYAGLFFT  +DV DNEL  LE++HLFVELL+SYF+NVCELDIVFNFNKVY+ILDE++L+GE+EE+SK+EIL+R++ LEKLD
Sbjct:   52 YNNYKLIYRRYAGLFFTIAVDVQDNELSYLESIHLFVELLDSYFANVCELDIVFNFNKVYSILDEYMLAGEIEETSKKEILDRVKFLEKLD 142
[Close]
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A7S4IKL5_9STRA (AP complex subunit sigma n=5 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4IKL5_9STRA)

HSP 1 Score: 139 bits (351), Expect = 3.950e-38
Identity = 67/91 (73.63%), Postives = 83/91 (91.21%), Query Frame = 3 
Query:    3 FGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 275
            +  YKLIYRRYAGLFFT  +DV DNEL  LET+HLFVELL+SYFSNVCELDIVFNFNKVY+ILDE++L+GE+EE+SKREIL+R++ +EK++
Sbjct:   63 YNNYKLIYRRYAGLFFTIAVDVADNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEYMLAGEIEETSKREILDRVKFMEKME 153
[Close]
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A7S2A2C1_TRICV (AP-2 complex subunit sigma n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2C1_TRICV)

HSP 1 Score: 142 bits (357), Expect = 4.350e-38
Identity = 69/91 (75.82%), Postives = 83/91 (91.21%), Query Frame = 3 
Query:    3 FGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 275
            +  YKLIYRRYAGLFFT  +DVNDNEL  LET+HLFVELL+SYFSNVCELDIVFNFNKVY+ILDE++L+GE+ E+SKREILER++ LEK++
Sbjct:  138 YNNYKLIYRRYAGLFFTIAVDVNDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEYMLAGEIGETSKREILERVKVLEKVE 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQX3_ECTSI3.130e-5196.70AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YZE0_9STRA6.890e-4587.64AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2CS13_9STRA2.350e-4180.90AP complex subunit sigma n=1 Tax=Dictyocha speculu... [more]
A0A7S3L6S1_9STRA3.500e-3975.82AP complex subunit sigma n=2 Tax=Bacillariophycida... [more]
A0A6T8NVY6_9STRA1.530e-3874.73AP complex subunit sigma n=1 Tax=Proboscia inermis... [more]
A0A1Z5K077_FISSO1.860e-3873.63AP complex subunit sigma n=1 Tax=Fistulifera solar... [more]
A0A7S0FJC4_9STRA2.550e-3873.63AP complex subunit sigma n=1 Tax=Minutocellus poly... [more]
B8C940_THAPS2.830e-3873.63AP complex subunit sigma (Fragment) n=2 Tax=Thalas... [more]
A0A7S4IKL5_9STRA3.950e-3873.63AP complex subunit sigma n=5 Tax=Bacillariophyta T... [more]
A0A7S2A2C1_TRICV4.350e-3875.82AP-2 complex subunit sigma n=1 Tax=Trieres chinens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58693contigH-elongata_contig58693:2141..3373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue3.6e-29
Seed eggNOG ortholog2880.D8LQX3
Preferred nameap2s1
KEGG koko:K11481,ko:K11827
KEGG Pathwayko04114,ko04144,ko04721,ko04914,ko04961,ko05016,map04114,map04144,map04721,map04914,map04961,map05016
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005634,GO:0005737,GO:0005886,GO:0005905,GO:0005933,GO:0005935,GO:0005938,GO:0006810,GO:0006886,GO:0006897,GO:0006898,GO:0007275,GO:0008104,GO:0008150,GO:0008565,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0010171,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030131,GO:0030132,GO:0030135,GO:0030136,GO:0030139,GO:0030276,GO:0030427,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034613,GO:0042763,GO:0042764,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045334,GO:0046907,GO:0048475,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0072583,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0099568
EggNOG free text desc.protein transporter activity
EggNOG OGsCOG5030@1,KOG0935@2759
EC2.7.11.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size749
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58693.13361.1prot_H-elongata_contig58693.13361.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58693 2612..3314 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.4616008-UTR-H-elongata_contig58693:2140..26111622930951.4616008-UTR-H-elongata_contig58693:2140..2611Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58693 2141..2611 -
1691679637.914055-UTR-H-elongata_contig58693:2140..26111691679637.914055-UTR-H-elongata_contig58693:2140..2611Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58693 2141..2611 -
1622930951.5459206-UTR-H-elongata_contig58693:3314..33731622930951.5459206-UTR-H-elongata_contig58693:3314..3373Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58693 3315..3373 -
1691679637.9442825-UTR-H-elongata_contig58693:3314..33731691679637.9442825-UTR-H-elongata_contig58693:3314..3373Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58693 3315..3373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.4808893-CDS-H-elongata_contig58693:2611..27131622930951.4808893-CDS-H-elongata_contig58693:2611..2713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58693 2612..2713 -
1691679637.92712-CDS-H-elongata_contig58693:2611..27131691679637.92712-CDS-H-elongata_contig58693:2611..2713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58693 2612..2713 -
1622930951.5238364-CDS-H-elongata_contig58693:3197..33141622930951.5238364-CDS-H-elongata_contig58693:3197..3314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58693 3198..3314 -
1691679637.9356918-CDS-H-elongata_contig58693:3197..33141691679637.9356918-CDS-H-elongata_contig58693:3197..3314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58693 3198..3314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58693.13361.1

>prot_H-elongata_contig58693.13361.1 ID=prot_H-elongata_contig58693.13361.1|Name=mRNA_H-elongata_contig58693.13361.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILS
GEVEESSKREILERIRELEKLD*
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mRNA from alignment at H-elongata_contig58693:2141..3373-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58693.13361.1 ID=mRNA_H-elongata_contig58693.13361.1|Name=mRNA_H-elongata_contig58693.13361.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1233bp|location=Sequence derived from alignment at H-elongata_contig58693:2141..3373- (Himanthalia elongata Himel1 dioecious)
AGTTTGGAACGTACAAGCTGATATACCGGCGGTACGCGGGGCTGTTCTTT
ACGTTCGGGATGGACGTAAACGACAACGAGCTGCTGGCGCTGGAAACGGT
GCATCTCTTCGTTGAGCTTCTCGAGTCTTACTTCTCCAACGTGTGCGAGC
TCGACATCGTTTTCAACTTCAACAAGGTGCGCGCAGGCGCGGGCGCTCAC
CGAGGAGCCCCGCGTGGTCGTGTACTGTTTCTGGCGGCATTGTTACTTAC
CTCGCCCCAGGGGGTTGAATGAATATACGGAAGCATGCAGCCGTGGGGGC
GGTAAAAAACATTTCTGAGTATTCAGCGATATGCGTCGAGAAAATCGCCA
TCGATATAATTCGAATGCGCCGCGTTTTGGTGCGTGTTGCCACTTAACCA
ACGTTTGTTGCGATCATTCATCGCGTCTCTTGAAAACTTGAACGTCGCCC
GTAATTTACAATAGCATACTCTACGCGGGTTGTTTTATCGATAATGATGC
GGACGGCAGGAGCAAGCGTGCGTTTTGGCCACAGAGTTAACTACGTACGC
GAAAGAGCGCGCTTTTGTAGCTCATCATCGATGGAGTCAGTCTACCCCGG
AAATATCGCAGAACGTTCTGGTAGTAACGAACGATCACAACGATGCACGA
AATACCTCAGGTGTACAACATCCTGGACGAATTCATCCTCAGCGGAGAGG
TGGAAGAGAGTAGCAAGCGAGAAATCCTGGAGCGAATCAGAGAGCTGGAG
AAACTGGACTAAAAAGACGGGAGGCGTTCGTAGAAAAAGCAGTCCCGGAA
TCGGAGAGATCGAAACCGTTTTTTTTGCCTTATCTGAAAATGAGGGCAGT
TGGTGTCTCTCTCTTTAGCGAGGTGCTATTTATTTTCGCCTTGGAAAGGA
ATTATTGGAAACTGAGACACGGAAGGAAACGGTGCGCTTACTTCCGGTAG
GGCGTGGATTGTGTGAGGTTTTGTGCGTGATCGACGACCGTAATTTCACG
GTTCTTTCTTCGTAAAGTTCCATACAATCGTGTGACTCGTGCTGACGACC
TTCTAATTGGTTTTCATCCATTTAGGCCCAAGGAGAGTCTGGCTGACCCG
AATCCCCGTCAGCGAGCGCGACTCATGCCCAGTCTGCTCGATGATCCACT
TTTTTTGCGGCACCACTGATGGACCACTGACGGAGTGATGAACCACCTCA
TCTGCCGTATATATTAGCCAATTTTAACGGACA
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Coding sequence (CDS) from alignment at H-elongata_contig58693:2141..3373-

>mRNA_H-elongata_contig58693.13361.1 ID=mRNA_H-elongata_contig58693.13361.1|Name=mRNA_H-elongata_contig58693.13361.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig58693:2141..3373- (Himanthalia elongata Himel1 dioecious)
ATGGACGTAAACGACAACGAGCTGCTGGCGCTGGAAACGGTGCATCTCTT
CGTTGAGCTTCTCGAGTCTTACTTCTCCAACGTGTGCGAGCTCGACATCG
TTTTCAACTTCAACAAGATGGACGTAAACGACAACGAGCTGCTGGCGCTG
GAAACGGTGCATCTCTTCGTTGAGCTTCTCGAGTCTTACTTCTCCAACGT
GTGCGAGCTCGACATCGTTTTCAACTTCAACAAGGTGTACAACATCCTGG
ACGAATTCATCCTCAGCGGAGAGGTGGAAGAGAGTAGCAAGCGAGAAATC
CTGGAGCGAATCAGAGAGCTGGAGAAACTGGACTAAGTGTACAACATCCT
GGACGAATTCATCCTCAGCGGAGAGGTGGAAGAGAGTAGCAAGCGAGAAA
TCCTGGAGCGAATCAGAGAGCTGGAGAAACTGGACTAA
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