mRNA_H-elongata_contig58680.13358.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58680.13358.1 vs. uniprot
Match: A0A6H5JP35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP35_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.990e-28 Identity = 77/253 (30.43%), Postives = 121/253 (47.83%), Query Frame = 2
Query: 11 DFPKQQLVTGVAILSGGHSIVIE-----------------------------------EFNQQAAWASIK---------------------------------KTDVSTTRRLKELTFEEWILKMANMVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRNN-RTETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALLQK 562
+FP +QLVTG+++++GGHS+VIE E + +I+ T + R L TFEEW+L +M C +I + L VQS Q+I++I+T +VR + G+ H+ E +GR++P+L+ WEM VG+ G +L+++ L+G+L ET+R + ++G +MK A RG EDYRVS +L TDFALL++
Sbjct: 99 EFPDRQLVTGLSVMAGGHSLVIEVTKPYDTDTAGGCPDGAPAPCLANGGLSVIVDGEKEADDSPLLHTIRDETLPGGIQVSAANLPVQCWQFGGDKISARHYANTIMEGRRHLLSETFEEWVLSFQHMAAHDWCTEYIAHKDLSDVQSAQAIYQIITPEVVVRFNVGIGHQTGGHVEMDGRIVPDLDVWEMDVGLAGLSLENETLTGILGETARPVLDEHGRAVMKGNKAYRGTPEDYRVSGALGTDFALLRQ 351
BLAST of mRNA_H-elongata_contig58680.13358.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE) HSP 1 Score: 127 bits (320), Expect = 1.200e-27 Identity = 75/249 (30.12%), Postives = 121/249 (48.59%), Query Frame = 2
Query: 11 DFPKQQLVTGVAILSGGHSIVIE----------------------------------------------------------------EFNQQAAWASIKKTDVSTTRRLKELTFEEWILKMANMVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRN-NRTETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALLQK 562
DFP +QLVTG++++S GHS+V+E +F WA + + R+L+ +FE+W+L +M C +I GL GVQS +I++IVT +VRL+ G+ H++ + + +GRV+P+L+ W+M VG+ G +L+++ L+G+L ET+R ++ + G +M +A RG EDYRVS L DFALL +
Sbjct: 448 DFPDRQLVTGLSVISEGHSLVLEVTNPYSTDLNDGCPDGSPTPCLANGGLSVTVDGEKNVGLIHPIRGEILPGGIEVSADNLPVQCWQFGGHKIWARHYEA-ILARRKLRAQSFEDWVLSFTDMAAHDWCTEYISEKGLTGVQSSHAIYQIVTPAVVVRLNVGIGHQDGDEVDWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDEDGHAVMAGDDAYRGTPEDYRVSGPLGMDFALLHQ 695
BLAST of mRNA_H-elongata_contig58680.13358.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI) HSP 1 Score: 122 bits (305), Expect = 2.260e-27 Identity = 69/188 (36.70%), Postives = 112/188 (59.57%), Query Frame = 2
Query: 14 FPKQQLVTGVAILSGGHSIVIE--EFNQQAAWASIKKTDVSTTRRLKE-LTFEEWILKM-ANMVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRNN-RTETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALLQK 562
F +Q V + ++ +E +F WA + + + R+L+ + EEWIL+ NM R C +I + L +Q+ +IF+I T T VRL++GV+++ + +GRV+P+LEFW+M VG++G + + LSGLL ET+R ++ + GE +M+ ++A RG VEDYRVS +L FALL +
Sbjct: 121 FSRQMPVADGTMTMSASNLPVECRQFGGHRIWARMYQDILEDRRQLRGGESLEEWILRYDQNMPARRWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQGDGELNWDGRVLPDLEFWQMDVGIDGLDVDNPALSGLLGETARPVYGENGEAVMEGSDAFRGTVEDYRVSSALGVHFALLDE 308
BLAST of mRNA_H-elongata_contig58680.13358.1 vs. uniprot
Match: A0A6H5JS96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE) HSP 1 Score: 122 bits (306), Expect = 9.130e-27 Identity = 79/250 (31.60%), Postives = 121/250 (48.40%), Query Frame = 2
Query: 11 DFPKQQLVTGVAILSGGHSIVIE---------------------------------------------------------------EFNQQAAWASIKKTDVSTTRRLK-ELTFEEWILKMAN-MVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRNN-RTETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALLQK 562
+FP +QL+T +A+LS GHS+VIE +F WA + + + R L + + EEWILK + M P C +I + L +QS +IF+I T T VRL++GV+++ N +GRV+P+LEFW+M VG++G + + LSGLL ET+R ++ + G+ +M+ +A RG +EDYRVSD+L F LL +
Sbjct: 158 EFPDRQLMTSLAVLSKGHSVVIEVENPYTVVTNGCPEGVSPCLANGGLRIIVDSQQVDELLRFSRHVPVADGAMTVSSSNLPVECQQFGGDRIWARMYQDMIEGRRELHGDESLEEWILKYDHGMAAPGWCAKYIAENDLADLQSDHAIFKIQTPTVTVRLNAGVNYQGNGELNWDGRVLPDLEFWQMGVGMDGLDVDNPALSGLLGETARPVYDENGQVVMEGFDAFRGTIEDYRVSDALDVHFPLLDE 407
BLAST of mRNA_H-elongata_contig58680.13358.1 vs. uniprot
Match: A0A6H5JP37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP37_9PHAE) HSP 1 Score: 116 bits (290), Expect = 1.920e-25 Identity = 75/230 (32.61%), Postives = 121/230 (52.61%), Query Frame = 2
Query: 11 DFPKQQLVTGVAILSGGHSIVIE--------------------------------------EFNQQAA-----WASIKKTDVSTTRRLKE-LTFEEWILKM-ANMVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRNN-RTETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALLQK 562
+FP +QL+T +AI+S G+S+VIE F++Q WA + + + R+L+ + EEWIL+ NM C +I + L +Q+ +IF+I T T VRL++GV++++N +GRV+P+LEFW++ VG++G + LSGL ET+ ++ + G+ +M+ +A RG VEDYRVS +L FALL +
Sbjct: 64 EFPDRQLMTSLAIMSEGYSVVIEVKNPYTTDTGGCPEDVSPCHANGGLRIIVDGHEVDELLRFSRQMPGGKRIWARMYQDILEGRRQLRGGESLEEWILRYDQNMPARTWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQSNGELNWDGRVLPDLEFWQIDVGIDGLDVDKPALSGLFGETACPVYDENGKAVMEGYDAFRGAVEDYRVSSALGVHFALLDE 293 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58680.13358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58680.13358.1 >prot_H-elongata_contig58680.13358.1 ID=prot_H-elongata_contig58680.13358.1|Name=mRNA_H-elongata_contig58680.13358.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp MANMVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRNNRback to top mRNA from alignment at H-elongata_contig58680:1786..3500+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58680.13358.1 ID=mRNA_H-elongata_contig58680.13358.1|Name=mRNA_H-elongata_contig58680.13358.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1715bp|location=Sequence derived from alignment at H-elongata_contig58680:1786..3500+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58680:1786..3500+ >mRNA_H-elongata_contig58680.13358.1 ID=mRNA_H-elongata_contig58680.13358.1|Name=mRNA_H-elongata_contig58680.13358.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig58680:1786..3500+ (Himanthalia elongata Himel1 dioecious)back to top |