mRNA_H-elongata_contig58680.13358.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58680.13358.1
Unique NamemRNA_H-elongata_contig58680.13358.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58680.13358.1 vs. uniprot
Match: A0A6H5JP35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP35_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.990e-28
Identity = 77/253 (30.43%), Postives = 121/253 (47.83%), Query Frame = 2
Query:   11 DFPKQQLVTGVAILSGGHSIVIE-----------------------------------EFNQQAAWASIK---------------------------------KTDVSTTRRLKELTFEEWILKMANMVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRNN-RTETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALLQK 562
            +FP +QLVTG+++++GGHS+VIE                                   E +      +I+                                  T +   R L   TFEEW+L   +M     C  +I +  L  VQS Q+I++I+T   +VR + G+ H+     E +GR++P+L+ WEM VG+ G +L+++ L+G+L ET+R +  ++G  +MK   A RG  EDYRVS +L TDFALL++
Sbjct:   99 EFPDRQLVTGLSVMAGGHSLVIEVTKPYDTDTAGGCPDGAPAPCLANGGLSVIVDGEKEADDSPLLHTIRDETLPGGIQVSAANLPVQCWQFGGDKISARHYANTIMEGRRHLLSETFEEWVLSFQHMAAHDWCTEYIAHKDLSDVQSAQAIYQIITPEVVVRFNVGIGHQTGGHVEMDGRIVPDLDVWEMDVGLAGLSLENETLTGILGETARPVLDEHGRAVMKGNKAYRGTPEDYRVSGALGTDFALLRQ 351          
BLAST of mRNA_H-elongata_contig58680.13358.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.200e-27
Identity = 75/249 (30.12%), Postives = 121/249 (48.59%), Query Frame = 2
Query:   11 DFPKQQLVTGVAILSGGHSIVIE----------------------------------------------------------------EFNQQAAWASIKKTDVSTTRRLKELTFEEWILKMANMVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRN-NRTETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALLQK 562
            DFP +QLVTG++++S GHS+V+E                                                                +F     WA   +  +   R+L+  +FE+W+L   +M     C  +I   GL GVQS  +I++IVT   +VRL+ G+ H++ +  + +GRV+P+L+ W+M VG+ G +L+++ L+G+L ET+R ++ + G  +M   +A RG  EDYRVS  L  DFALL +
Sbjct:  448 DFPDRQLVTGLSVISEGHSLVLEVTNPYSTDLNDGCPDGSPTPCLANGGLSVTVDGEKNVGLIHPIRGEILPGGIEVSADNLPVQCWQFGGHKIWARHYEA-ILARRKLRAQSFEDWVLSFTDMAAHDWCTEYISEKGLTGVQSSHAIYQIVTPAVVVRLNVGIGHQDGDEVDWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDEDGHAVMAGDDAYRGTPEDYRVSGPLGMDFALLHQ 695          
BLAST of mRNA_H-elongata_contig58680.13358.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.260e-27
Identity = 69/188 (36.70%), Postives = 112/188 (59.57%), Query Frame = 2
Query:   14 FPKQQLVTGVAILSGGHSIVIE--EFNQQAAWASIKKTDVSTTRRLKE-LTFEEWILKM-ANMVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRNN-RTETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALLQK 562
            F +Q  V    +     ++ +E  +F     WA + +  +   R+L+   + EEWIL+   NM   R C  +I  + L  +Q+  +IF+I T T  VRL++GV+++ +     +GRV+P+LEFW+M VG++G  + +  LSGLL ET+R ++ + GE +M+ ++A RG VEDYRVS +L   FALL +
Sbjct:  121 FSRQMPVADGTMTMSASNLPVECRQFGGHRIWARMYQDILEDRRQLRGGESLEEWILRYDQNMPARRWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQGDGELNWDGRVLPDLEFWQMDVGIDGLDVDNPALSGLLGETARPVYGENGEAVMEGSDAFRGTVEDYRVSSALGVHFALLDE 308          
BLAST of mRNA_H-elongata_contig58680.13358.1 vs. uniprot
Match: A0A6H5JS96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 9.130e-27
Identity = 79/250 (31.60%), Postives = 121/250 (48.40%), Query Frame = 2
Query:   11 DFPKQQLVTGVAILSGGHSIVIE---------------------------------------------------------------EFNQQAAWASIKKTDVSTTRRLK-ELTFEEWILKMAN-MVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRNN-RTETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALLQK 562
            +FP +QL+T +A+LS GHS+VIE                                                               +F     WA + +  +   R L  + + EEWILK  + M  P  C  +I  + L  +QS  +IF+I T T  VRL++GV+++ N     +GRV+P+LEFW+M VG++G  + +  LSGLL ET+R ++ + G+ +M+  +A RG +EDYRVSD+L   F LL +
Sbjct:  158 EFPDRQLMTSLAVLSKGHSVVIEVENPYTVVTNGCPEGVSPCLANGGLRIIVDSQQVDELLRFSRHVPVADGAMTVSSSNLPVECQQFGGDRIWARMYQDMIEGRRELHGDESLEEWILKYDHGMAAPGWCAKYIAENDLADLQSDHAIFKIQTPTVTVRLNAGVNYQGNGELNWDGRVLPDLEFWQMGVGMDGLDVDNPALSGLLGETARPVYDENGQVVMEGFDAFRGTIEDYRVSDALDVHFPLLDE 407          
BLAST of mRNA_H-elongata_contig58680.13358.1 vs. uniprot
Match: A0A6H5JP37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP37_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.920e-25
Identity = 75/230 (32.61%), Postives = 121/230 (52.61%), Query Frame = 2
Query:   11 DFPKQQLVTGVAILSGGHSIVIE--------------------------------------EFNQQAA-----WASIKKTDVSTTRRLKE-LTFEEWILKM-ANMVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRNN-RTETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALLQK 562
            +FP +QL+T +AI+S G+S+VIE                                       F++Q       WA + +  +   R+L+   + EEWIL+   NM     C  +I  + L  +Q+  +IF+I T T  VRL++GV++++N     +GRV+P+LEFW++ VG++G  +    LSGL  ET+  ++ + G+ +M+  +A RG VEDYRVS +L   FALL +
Sbjct:   64 EFPDRQLMTSLAIMSEGYSVVIEVKNPYTTDTGGCPEDVSPCHANGGLRIIVDGHEVDELLRFSRQMPGGKRIWARMYQDILEGRRQLRGGESLEEWILRYDQNMPARTWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQSNGELNWDGRVLPDLEFWQIDVGIDGLDVDKPALSGLFGETACPVYDENGKAVMEGYDAFRGAVEDYRVSSALGVHFALLDE 293          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58680.13358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JP35_9PHAE1.990e-2830.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNZ2_9PHAE1.200e-2730.12VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LMW2_ECTSI2.260e-2736.70Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JS96_9PHAE9.130e-2731.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP37_9PHAE1.920e-2532.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58680contigH-elongata_contig58680:1786..3500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size1529
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58680.13358.1prot_H-elongata_contig58680.13358.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58680 2150..2545 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.1298993-UTR-H-elongata_contig58680:1785..18641622930951.1298993-UTR-H-elongata_contig58680:1785..1864Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58680 1786..1864 +
1691679637.7968912-UTR-H-elongata_contig58680:1785..18641691679637.7968912-UTR-H-elongata_contig58680:1785..1864Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58680 1786..1864 +
1622930951.149672-UTR-H-elongata_contig58680:2050..21491622930951.149672-UTR-H-elongata_contig58680:2050..2149Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58680 2051..2149 +
1691679637.8069134-UTR-H-elongata_contig58680:2050..21491691679637.8069134-UTR-H-elongata_contig58680:2050..2149Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58680 2051..2149 +
1622930951.191401-UTR-H-elongata_contig58680:2545..35001622930951.191401-UTR-H-elongata_contig58680:2545..3500Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58680 2546..3500 +
1691679637.824727-UTR-H-elongata_contig58680:2545..35001691679637.824727-UTR-H-elongata_contig58680:2545..3500Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58680 2546..3500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.1656144-CDS-H-elongata_contig58680:2149..25451622930951.1656144-CDS-H-elongata_contig58680:2149..2545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58680 2150..2545 +
1691679637.815831-CDS-H-elongata_contig58680:2149..25451691679637.815831-CDS-H-elongata_contig58680:2149..2545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58680 2150..2545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58680.13358.1

>prot_H-elongata_contig58680.13358.1 ID=prot_H-elongata_contig58680.13358.1|Name=mRNA_H-elongata_contig58680.13358.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MANMVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRNNR
TETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIM
KDANAIRGRVEDYRVSDSLSTDFALLQKNAD*
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mRNA from alignment at H-elongata_contig58680:1786..3500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58680.13358.1 ID=mRNA_H-elongata_contig58680.13358.1|Name=mRNA_H-elongata_contig58680.13358.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1715bp|location=Sequence derived from alignment at H-elongata_contig58680:1786..3500+ (Himanthalia elongata Himel1 dioecious)
TCATTCCATCGATTTCCCGAAACAACAGCTTGTAACGGGCGTCGCCATCC TATCAGGAGGACATTCAATTGTGATCGAGGTGAAAGAGCCGCATACAACG GATACCGCCAAATGTCCTTAAAGAATATTTCCTTGCCTAGCGAACGGGGC AATGCGTATCGTCGTGAACGGGCATGATGACGATGAATTCCTCAGTCCTA CGCAGGGCATGCACGTGACCGACGGCATTGAACTATCATAATCTAATCTA CCGCTGGTGTGCCAGGAGTTCAACCAGCAAGCAGCTTGGGCAAGTATCAA GAAAACCGACGTAAGCACCACACGACGCCTCAAGGAGTTAACTTTTGAAG AATGGATTCTAAAGATGGCGAACATGGTAGTGCCGAGACGTTGCTTGAAT TTCATCCACAACCACGGCCTATTTGGTGTACAGTCCAGACAATCTATCTT CAGGATTGTGACCTCCACTGCCATCGTTCGTCTTAGCTCTGGAGTGAGCC ACAGGAACAATCGAACCGAGACGAACGGACGCGTGATTCCGGAGTTGGAA TTCTGGGAGATGAGTGTCGGGGTAAACGGCCCTACGCTACAGCACGATAA TTTATCGGGTCTTCTGACCGAGACATCAAGGGTAATGCACATAAAATACG GCGAGCCTATTATGAAGGATGCGAATGCCATACGCGGCAGAGTCGAAGAC TACCGCGTCTCTGACTCTCTGTCCACCGATTTCGCCCTGCTTCAGAAAAA CGCCGATTAAAGAGGCGCCCGGGCACCAGATGATACCGCCTAAAAGGGCT ATCGGTAGTCTACTGAGTTCTTCAGCAATCGAACTGAGAGCTCATACTAA AATGCAAGGATATTTCTACTCATGATGGCATTTGTAATGACGCCCGATGA GGATATAGCTCTTGCACAACGCCTTATACGGTGAAATTGGGCGGATGAAA CCAACGGGCGAGTGGGTTTTGTAGGAGATAATATAGTTGAGGGCAAATGA ATTGTCAATAAACGATCTATACATAGAACAAGACGTTGGGTGAGCAATCC GAGCAGCATCGATGCAGCCCTCAACCAAACAAGTTTAATCCACGTCGTTA CATATCTATCCAAGTCGTGCTTATCTTGAGGGTTGGCTTATCAAGTTTCG TGACTGTGCGTATAATGATGAGCCATCGTTTCTATGCCACTTCTGAAGTA TACACACCCGTGGTATGATGTGGTCTCCACCTTCTTCGGTTCCTAAATCT CTCGAATATCGGTTTGGCCTTGGGTTTGATTTGACTTTGATGAGAAGCTA TATGCCTCGCGCATTGATGATAAAGCTATATACGGAAAAACCGCGAGACG TGTGTCACCTATGGACTGCCTAGCATATATTTGCATGCAATGTGTAGTGA AGTCATCAGTCAAAGTGTTACTTACGGTCTATAAAACTAAGAACGAGGAA TGAATAAGCCGGGCTTCAATCTGGGGGTGAGTTCTATTTATCGGGTAATT TATATACCAGGTAGTCTATCGGCTCATGGTCGAAATCCGGTTGCTGCTAG AATATATATAAATATATTGGTACTATCTACGGCTTCGAGAGAAATCATAA CTTGACCAGCCATGCAAGAGAATTGAGAAGGCAACTAGGATATTTGCATA GTGCGTGTCAAGCGGACTGTTATGGGGAGTAGCATGTACTTGAAAGCGAT CACACTATAATACAC
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Coding sequence (CDS) from alignment at H-elongata_contig58680:1786..3500+

>mRNA_H-elongata_contig58680.13358.1 ID=mRNA_H-elongata_contig58680.13358.1|Name=mRNA_H-elongata_contig58680.13358.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig58680:1786..3500+ (Himanthalia elongata Himel1 dioecious)
ATGGCGAACATGGTAGTGCCGAGACGTTGCTTGAATTTCATCCACAACCA
CGGCCTATTTGGTGTACAGTCCAGACAATCTATCTTCAGGATTGTGACCT
CCACTGCCATCGTTCGTCTTAGCTCTGGAGTGAGCCACAGGAACAATCGA
ACCGAGACGAACGGACGCGTGATTCCGGAGTTGGAATTCTGGGAGATGAG
TGTCGGGGTAAACGGCCCTACGCTACAGCACGATAATTTATCGGGTCTTC
TGACCGAGACATCAAGGGTAATGCACATAAAATACGGCGAGCCTATTATG
AAGGATGCGAATGCCATACGCGGCAGAGTCGAAGACTACCGCGTCTCTGA
CTCTCTGTCCACCGATTTCGCCCTGCTTCAGAAAAACGCCGATTAAATGG
CGAACATGGTAGTGCCGAGACGTTGCTTGAATTTCATCCACAACCACGGC
CTATTTGGTGTACAGTCCAGACAATCTATCTTCAGGATTGTGACCTCCAC
TGCCATCGTTCGTCTTAGCTCTGGAGTGAGCCACAGGAACAATCGAACCG
AGACGAACGGACGCGTGATTCCGGAGTTGGAATTCTGGGAGATGAGTGTC
GGGGTAAACGGCCCTACGCTACAGCACGATAATTTATCGGGTCTTCTGAC
CGAGACATCAAGGGTAATGCACATAAAATACGGCGAGCCTATTATGAAGG
ATGCGAATGCCATACGCGGCAGAGTCGAAGACTACCGCGTCTCTGACTCT
CTGTCCACCGATTTCGCCCTGCTTCAGAAAAACGCCGATTAA
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