mRNA_H-elongata_contig58680.13357.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58680.13357.1 vs. uniprot
Match: A0A6H5JS96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE) HSP 1 Score: 263 bits (673), Expect = 1.590e-76 Identity = 136/303 (44.88%), Postives = 199/303 (65.68%), Query Frame = 1
Query: 604 CPDGVSVCKDPHQ--LQGQQVNWPGVDGGWYSLLRDKIADLHINVRTTASHSIDFPKQQLVTGVAILSGGHSIVIEVKEPHTTDTAKCP*RIFPCLANGAMRIVVNGHDDDEFLSPTQGMHVTDG-IELS*SNLPLVCQEFNQQAAWASIKKTDVSTTRRLK-ELTFEEWILKMAN-MVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRNN-RTETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALLQK 1494
CP G +VC DPH L+GQ+++W GVDGGWYSL++D D++INVR TA +FP +QL+T +A+LS GHS+VIEV+ P+T T CP + PCLANG +RI+V+ DE L ++ + V DG + +S SNLP+ CQ+F WA + + + R L + + EEWILK + M P C +I + L +QS +IF+I T T VRL++GV+++ N +GRV+P+LEFW+M VG++G + + LSGLL ET+R ++ + G+ +M+ +A RG +EDYRVSD+L F LL +
Sbjct: 105 CPPGDAVCGDPHMQGLRGQRIDWSGVDGGWYSLIKDDNIDININVRLTAPLPDEFPDRQLMTSLAVLSKGHSVVIEVENPYTVVTNGCPEGVSPCLANGGLRIIVDSQQVDELLRFSRHVPVADGAMTVSSSNLPVECQQFGGDRIWARMYQDMIEGRRELHGDESLEEWILKYDHGMAAPGWCAKYIAENDLADLQSDHAIFKIQTPTVTVRLNAGVNYQGNGELNWDGRVLPDLEFWQMGVGMDGLDVDNPALSGLLGETARPVYDENGQVVMEGFDAFRGTIEDYRVSDALDVHFPLLDE 407
BLAST of mRNA_H-elongata_contig58680.13357.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI) HSP 1 Score: 256 bits (655), Expect = 3.190e-75 Identity = 135/306 (44.12%), Postives = 201/306 (65.69%), Query Frame = 1
Query: 595 ITDCPDGVSVCKDPHQ--LQGQQVNWPGVDGGWYSLLRDKIADLHINVRTTASHSIDFPKQQLVTGVAILSGGHSIVIEVKEPHTTDTAKCP*RIFPCLANGAMRIVVNGHDDDEFLSPTQGMHVTDG-IELS*SNLPLVCQEFNQQAAWASIKKTDVSTTRRLKE-LTFEEWILKM-ANMVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRNN-RTETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALLQK 1494
+ D + + DPH L+GQ++NW GVDGGWYSL++D ADL INVR TA +FP +QL+T +AI+S G+S+VIEV+ P+T T CP + PCLANG +RI+V+G + DE L ++ M V DG + +S SNLP+ C++F WA + + + R+L+ + EEWIL+ NM R C +I + L +Q+ +IF+I T T VRL++GV+++ + +GRV+P+LEFW+M VG++G + + LSGLL ET+R ++ + GE +M+ ++A RG VEDYRVS +L FALL +
Sbjct: 3 VDDDDNADDMWGDPHMRGLRGQRINWSGVDGGWYSLVKDDHADLSINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVENPYTIVTGGCPEGVSPCLANGGLRIIVDGQEVDELLRFSRQMPVADGTMTMSASNLPVECRQFGGHRIWARMYQDILEDRRQLRGGESLEEWILRYDQNMPARRWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQGDGELNWDGRVLPDLEFWQMDVGIDGLDVDNPALSGLLGETARPVYGENGEAVMEGSDAFRGTVEDYRVSSALGVHFALLDE 308
BLAST of mRNA_H-elongata_contig58680.13357.1 vs. uniprot
Match: A0A6H5JP35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP35_9PHAE) HSP 1 Score: 239 bits (610), Expect = 3.070e-68 Identity = 127/307 (41.37%), Postives = 190/307 (61.89%), Query Frame = 1
Query: 595 ITDCPDGVSVCKDPHQLQGQQVNWPGVDGGWYSLLRDKIADLHINVRTTASHSIDFPKQQLVTGVAILSGGHSIVIEVKEPHTTDTAK-CP*RI-FPCLANGAMRIVVNGH---DDDEFLSPTQGMHVTDGIELS*SNLPLVCQEFNQQAAWAS-IKKTDVSTTRRLKELTFEEWILKMANMVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRNN-RTETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALLQK 1494
+T C D +V L GQ ++W G+DGGWYSL++D DL++NVR TA +FP +QLVTG+++++GGHS+VIEV +P+ TDTA CP PCLANG + ++V+G DD L + + GI++S +NLP+ C +F A T + R L TFEEW+L +M C +I + L VQS Q+I++I+T +VR + G+ H+ E +GR++P+L+ WEM VG+ G +L+++ L+G+L ET+R + ++G +MK A RG EDYRVS +L TDFALL++
Sbjct: 51 LTGCTDTYAV------LLGQSIDWFGIDGGWYSLVQDPDIDLNVNVRLTAPPPEEFPDRQLVTGLSVMAGGHSLVIEVTKPYDTDTAGGCPDGAPAPCLANGGLSVIVDGEKEADDSPLLHTIRDETLPGGIQVSAANLPVQCWQFGGDKISARHYANTIMEGRRHLLSETFEEWVLSFQHMAAHDWCTEYIAHKDLSDVQSAQAIYQIITPEVVVRFNVGIGHQTGGHVEMDGRIVPDLDVWEMDVGLAGLSLENETLTGILGETARPVLDEHGRAVMKGNKAYRGTPEDYRVSGALGTDFALLRQ 351
BLAST of mRNA_H-elongata_contig58680.13357.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE) HSP 1 Score: 248 bits (634), Expect = 5.140e-68 Identity = 125/302 (41.39%), Postives = 188/302 (62.25%), Query Frame = 1
Query: 604 CPDGVSVCKDPHQ--LQGQQVNWPGVDGGWYSLLRDKIADLHINVRTTASHSIDFPKQQLVTGVAILSGGHSIVIEVKEPHTTDTAK-CP*RI-FPCLANGAMRIVVNGHDDDEFLSPTQGMHVTDGIELS*SNLPLVCQEFNQQAAWASIKKTDVSTTRRLKELTFEEWILKMANMVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRN-NRTETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALLQK 1494
CP G +C DPH L GQ ++W GVDG WYS ++D DL +NVR TA DFP +QLVTG++++S GHS+V+EV P++TD CP PCLANG + + V+G + + P +G + GIE+S NLP+ C +F WA + + R+L+ +FE+W+L +M C +I GL GVQS +I++IVT +VRL+ G+ H++ + + +GRV+P+L+ W+M VG+ G +L+++ L+G+L ET+R ++ + G +M +A RG EDYRVS L DFALL +
Sbjct: 395 CPKGSHICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLRVNVRLTAPLPDDFPDRQLVTGLSVISEGHSLVLEVTNPYSTDLNDGCPDGSPTPCLANGGLSVTVDGEKNVGLIHPIRGEILPGGIEVSADNLPVQCWQFGGHKIWARHYEA-ILARRKLRAQSFEDWVLSFTDMAAHDWCTEYISEKGLTGVQSSHAIYQIVTPAVVVRLNVGIGHQDGDEVDWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDEDGHAVMAGDDAYRGTPEDYRVSGPLGMDFALLHQ 695
BLAST of mRNA_H-elongata_contig58680.13357.1 vs. uniprot
Match: A0A6H5JP37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP37_9PHAE) HSP 1 Score: 227 bits (579), Expect = 1.690e-64 Identity = 125/305 (40.98%), Postives = 184/305 (60.33%), Query Frame = 1
Query: 595 ITDCPDGVSVCKDPHQ--LQGQQVNWPGVDGGWYSLLRDKIADLHINVRTTASHSIDFPKQQLVTGVAILSGGHSIVIEVKEPHTTDTAKCP*RIFPCLANGAMRIVVNGHDDDEFLSPTQGMHVTDGIELS*SNLPLVCQEFNQQAAWASIKKTDVSTTRRLKE-LTFEEWILKM-ANMVVPRRCLNFIHNHGLFGVQSRQSIFRIVTSTAIVRLSSGVSHRNN-RTETNGRVIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALLQK 1494
+ D + + DPH L GQ+VNW G DGGWYSL++D ADLHINVR TA +FP +QL+T +AI+S G+S+VIEVK P+TTDT CP + PC ANG +RI+V+GH+ DE L ++ M + WA + + + R+L+ + EEWIL+ NM C +I + L +Q+ +IF+I T T VRL++GV++++N +GRV+P+LEFW++ VG++G + LSGL ET+ ++ + G+ +M+ +A RG VEDYRVS +L FALL +
Sbjct: 8 VDDDDNADHIWGDPHMRGLLGQRVNWSGFDGGWYSLIKDDNADLHINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVKNPYTTDTGGCPEDVSPCHANGGLRIIVDGHEVDELLRFSRQMP-------------------GGKRIWARMYQDILEGRRQLRGGESLEEWILRYDQNMPARTWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQSNGELNWDGRVLPDLEFWQIDVGIDGLDVDKPALSGLFGETACPVYDENGKAVMEGYDAFRGAVEDYRVSSALGVHFALLDE 293
BLAST of mRNA_H-elongata_contig58680.13357.1 vs. uniprot
Match: A0A6H5KYD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD0_9PHAE) HSP 1 Score: 175 bits (444), Expect = 2.240e-45 Identity = 109/305 (35.74%), Postives = 162/305 (53.11%), Query Frame = 1
Query: 610 DGVSVCKDPHQ--LQGQQVNWPGVDGGWYSLLRDKIADLHINVRTTASHSIDFPKQQLVTGVAILSG-GHSIVIEVKEPHTTDTAKCP*RIFPCLANGAMRIVVNGHDDDEFLSPTQGMHVTDG-IELS*SNLPLVCQEFNQQAAWAS--IKKTDVSTTRRLKELT-FEEWILKMANMVVPRRCLNFIHNH---GLFGVQSRQSIFRIVTSTAIVRLSSGVSHRNNRTETNGR--VIPELEFWEMSVGVNGPTLQHDNLSGLLTETSRVMHIKYGEPIMKDANAIRGRVEDYRVSDSLSTDFALL 1488
D V D H L GQ+++W G D GWY LL + ++ +N R TA +FP +QLV+GV+I S G S+V+EVK P TT+T C PCLA GA+RI+V+G + SP + + + G + +S +NLP C+ F WA+ D S R L+ T F +W+L+ M P C F GL VQS ++I R+ T VR+ GV+++++ ++G ++PEL+FW+ + L G+L +T+R + G+PI A+RG VE RVS L DF +
Sbjct: 3 DDPQVSGDSHMVGLLGQEIDWYGEDSGWYCLLVN--SEFQVNARVTAPMPDEFPTRQLVSGVSIRSAEGPSLVVEVKNPITTETEGCSSTSAPCLAEGALRILVDGDESHALQSPVENLVLPGGDLVVSSANLPAECRPFGGDRIWAAQFAAMNDASGRRSLRGHTPFADWVLEADTMAAPGWCALFAREQRLSGLSSVQSNRAILRVETGGVTVRVDVGVNYQDSVLSSDGNAVLVPELDFWQTDIAFE-ELRPSGELGGMLGDTARYVIDDDGKPITSGMEALRGPVETCRVSGPLGVDFEQM 304
BLAST of mRNA_H-elongata_contig58680.13357.1 vs. uniprot
Match: D7G4E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E8_ECTSI) HSP 1 Score: 110 bits (275), Expect = 1.300e-24 Identity = 50/106 (47.17%), Postives = 73/106 (68.87%), Query Frame = 1
Query: 613 GVSVCKDPHQ--LQGQQVNWPGVDGGWYSLLRDKIADLHINVRTTASHSIDFPKQQLVTGVAILSGGHSIVIEVKEPHTTD-TAKCP*RIF-PCLANGAMRIVVNG 918
G +C DPH L+GQ ++W GVDGGWY+ ++D DLH+NVR TA +FP++QLVTG+++++G HS+++EV P+ TD C + PCLANG + + VNG
Sbjct: 4 GTDICDDPHMKGLRGQHIDWFGVDGGWYAFIKDDDIDLHVNVRLTAPLPEEFPERQLVTGLSVIAGEHSLILEVTNPYDTDINGGCLDGMSTPCLANGGLSVTVNG 109
BLAST of mRNA_H-elongata_contig58680.13357.1 vs. uniprot
Match: A0A6H5KHZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHZ2_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 6.680e-16 Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query: 604 CPDGVSVCKDPHQ--LQGQQVNWPGVDGGWYSLLRDKIADLHINVRTTASHSIDFPKQQLVTGVAI----------------------LSGGHSIVIEVK 831
CPDG ++C DPH L GQ ++W GVDGGWYS +RD DL++NVR TA +FP +QLVTG+++ ++ GHS+VIEV+
Sbjct: 34 CPDGTNLCLDPHMKGLFGQNIDWFGVDGGWYSFVRDPDIDLNVNVRLTAPLPEEFPDRQLVTGLSVVXXXXXXXXXXXXXXXXXXXXXMARGHSLVIEVR 133 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58680.13357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58680.13357.1 >prot_H-elongata_contig58680.13357.1 ID=prot_H-elongata_contig58680.13357.1|Name=mRNA_H-elongata_contig58680.13357.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp MLDPDEGTCCGMCSQVALNDEIVRLLVSDASNSTGGMLNPGIPEQNNIDIback to top mRNA from alignment at H-elongata_contig58680:122..3500+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58680.13357.1 ID=mRNA_H-elongata_contig58680.13357.1|Name=mRNA_H-elongata_contig58680.13357.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3379bp|location=Sequence derived from alignment at H-elongata_contig58680:122..3500+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58680:122..3500+ >mRNA_H-elongata_contig58680.13357.1 ID=mRNA_H-elongata_contig58680.13357.1|Name=mRNA_H-elongata_contig58680.13357.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig58680:122..3500+ (Himanthalia elongata Himel1 dioecious)back to top |