mRNA_H-elongata_contig58621.13354.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58621.13354.1
Unique NamemRNA_H-elongata_contig58621.13354.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58621.13354.1 vs. uniprot
Match: D7G0G0_ECTSI (ILEI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G0_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 4.860e-5
Identity = 48/148 (32.43%), Postives = 70/148 (47.30%), Query Frame = 1 
Query:    1 MARVEVGSLSTPMLEIKMSSLLKMCRDGPKAQLTANSLGFFDHFLEKELPAKPRGP-VDTYE-----NLGVPFEWEIAPDGLSGGPSRTDEXXXXXXXSMAQAETDR-GFPGWPS--------VLMVNARDAEQVILRAAGHKDSPEV 399
            M +++  SL  PML+ K++SLL++CRD PK Q  A  L  F+   E  +   P G  V   E     ++  P  W+          ++TD        +++ A+T   G P  P         V +VN RDAE++ LRAA   DS EV
Sbjct: 4188 MEKMDAASLPPPMLDSKLASLLRICRDCPKEQPPALGLENFE--AEPAIQPLPDGSSVRVGEPSWPSSIHSPIVWDSF---FEAQTAKTD------LSAVSTADTPAVGMPMIPRCLRRYRLRVFVVNPRDAEEISLRAAPRTDSDEV 4324
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58621.13354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0G0_ECTSI4.860e-532.43ILEI domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58621contigH-elongata_contig58621:438..1296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size399
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930950.8521507-CDS-H-elongata_contig58621:437..7401622930950.8521507-CDS-H-elongata_contig58621:437..740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58621 438..740 -
1691679637.6812747-CDS-H-elongata_contig58621:437..7401691679637.6812747-CDS-H-elongata_contig58621:437..740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58621 438..740 -
1622930950.865488-CDS-H-elongata_contig58621:1200..12961622930950.865488-CDS-H-elongata_contig58621:1200..1296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58621 1201..1296 -
1691679637.691679-CDS-H-elongata_contig58621:1200..12961691679637.691679-CDS-H-elongata_contig58621:1200..1296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58621 1201..1296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58621.13354.1prot_H-elongata_contig58621.13354.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58621 438..1296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58621.13354.1

>prot_H-elongata_contig58621.13354.1 ID=prot_H-elongata_contig58621.13354.1|Name=mRNA_H-elongata_contig58621.13354.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MARVEVGSLSTPMLEIKMSSLLKMCRDGPKAQLTANSLGFFDHFLEKELP
AKPRGPVDTYENLGVPFEWEIAPDGLSGGPSRTDEPSRTDGPSMAQAETD
RGFPGWPSVLMVNARDAEQVILRAAGHKDSPEV
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mRNA from alignment at H-elongata_contig58621:438..1296-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58621.13354.1 ID=mRNA_H-elongata_contig58621.13354.1|Name=mRNA_H-elongata_contig58621.13354.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=859bp|location=Sequence derived from alignment at H-elongata_contig58621:438..1296- (Himanthalia elongata Himel1 dioecious)
ATGGCCAGGGTGGAGGTGGGGAGCCTATCAACCCCGATGCTGGAAATCAA
GATGTCGTCCTTGCTGAAGATGTGCCGCGATGGTCCAAAGGCACAGGTAT
GCAGATGGCACATACTTATCATTCATTCAGTACTATAAATATGATTAATA
ATAGACCATACTTTATGTTAATGTTAATTGTCTTGGCATTCGTGCTGTAC
GGCCGGATCGATCGATCTATGGTCTATCTTCATCCCCCCCGCCCCCCCCG
CTCCAAAAAACAGCGACCGATCAGGGAAAAAACTCAAATAGTTGCTTGCA
CGTCTTGAAGTAAAAGGGAAAATTGCAAATAACTCCTTTTCCCCGCAATA
AAAAACATCCTTTTTGTTGGAACGATTAACGATGCCGGTTAACGATGCTG
AACAACACATGAGCGGGCCGTATTAACTATGCGCCATGCGCCATCGTCTA
TCGTCTATCGTCTATCGTCTCAATCCTATCCTATAAATGATATGTAGATA
AACATCAAGGGTGTAGTAGTATATATTAAGTCAGTACGTCCCCTGGATCT
TTGCAGCTTACAGCCAACAGCCTGGGCTTCTTCGATCATTTCTTGGAGAA
GGAACTCCCGGCGAAACCAAGAGGCCCCGTCGACACCTACGAAAACCTGG
GCGTGCCCTTCGAGTGGGAAATTGCGCCGGATGGACTCTCTGGCGGACCC
TCAAGGACTGACGAACCCTCAAGGACTGACGGACCCTCAATGGCCCAGGC
AGAGACAGATCGAGGGTTCCCTGGATGGCCGAGTGTGTTGATGGTGAATG
CGCGAGACGCAGAGCAAGTAATCCTGAGGGCTGCAGGGCACAAGGACTCC
CCCGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig58621:438..1296-

>mRNA_H-elongata_contig58621.13354.1 ID=mRNA_H-elongata_contig58621.13354.1|Name=mRNA_H-elongata_contig58621.13354.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig58621:438..1296- (Himanthalia elongata Himel1 dioecious)
ATGGCCAGGGTGGAGGTGGGGAGCCTATCAACCCCGATGCTGGAAATCAA
GATGTCGTCCTTGCTGAAGATGTGCCGCGATGGTCCAAAGGCACAGATGG
CCAGGGTGGAGGTGGGGAGCCTATCAACCCCGATGCTGGAAATCAAGATG
TCGTCCTTGCTGAAGATGTGCCGCGATGGTCCAAAGGCACAGCTTACAGC
CAACAGCCTGGGCTTCTTCGATCATTTCTTGGAGAAGGAACTCCCGGCGA
AACCAAGAGGCCCCGTCGACACCTACGAAAACCTGGGCGTGCCCTTCGAG
TGGGAAATTGCGCCGGATGGACTCTCTGGCGGACCCTCAAGGACTGACGA
ACCCTCAAGGACTGACGGACCCTCAATGGCCCAGGCAGAGACAGATCGAG
GGTTCCCTGGATGGCCGAGTGTGTTGATGGTGAATGCGCGAGACGCAGAG
CAAGTAATCCTGAGGGCTGCAGGGCACAAGGACTCCCCCGAGGTGCTTAC
AGCCAACAGCCTGGGCTTCTTCGATCATTTCTTGGAGAAGGAACTCCCGG
CGAAACCAAGAGGCCCCGTCGACACCTACGAAAACCTGGGCGTGCCCTTC
GAGTGGGAAATTGCGCCGGATGGACTCTCTGGCGGACCCTCAAGGACTGA
CGAACCCTCAAGGACTGACGGACCCTCAATGGCCCAGGCAGAGACAGATC
GAGGGTTCCCTGGATGGCCGAGTGTGTTGATGGTGAATGCGCGAGACGCA
GAGCAAGTAATCCTGAGGGCTGCAGGGCACAAGGACTCCCCCGAGGTG
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