mRNA_H-elongata_contig58605.13351.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58605.13351.1
Unique NamemRNA_H-elongata_contig58605.13351.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58605.13351.1 vs. uniprot
Match: D7FQH9_ECTSI (Cation efflux family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQH9_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 5.000e-7
Identity = 28/45 (62.22%), Postives = 38/45 (84.44%), Query Frame = 1
Query:    1 APRERKLKRAIASLFLVFLVEMIGGILAGSLAIMSDAAHLLSDVS 135
            A  +RKLK+A A + + F+VE+IGG+ +GSLAI+SDAAHLL+DVS
Sbjct:   77 AANQRKLKQATAFVLVFFVVEVIGGVWSGSLAIISDAAHLLADVS 121          
BLAST of mRNA_H-elongata_contig58605.13351.1 vs. uniprot
Match: A0A836CJ41_9STRA (Cation efflux protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ41_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.260e-6
Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 1
Query:   16 KLKRAIASLFLVFLVEMIGGILAGSLAIMSDAAHLLSDVS 135
            KLKRA   + + F+VE++GGI+AGSLAI++DAAHLL+DVS
Sbjct:    6 KLKRATVFVLIFFVVELVGGIMAGSLAILTDAAHLLTDVS 45          
BLAST of mRNA_H-elongata_contig58605.13351.1 vs. uniprot
Match: A0A2R6WZM4_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WZM4_MARPO)

HSP 1 Score: 52.0 bits (123), Expect = 3.140e-6
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 APRERKLKRAIASLFLVFLVEMIGGILAGSLAIMSDAAHLLSDVSVSSTHLLLLLTSSY 177
            A   ++L+RA+   F   L+E++GG LAGSLAI+SDAAHLLSDV+  +  LL L  S +
Sbjct:   66 ASASKRLQRALVVCFFFMLLEIVGGSLAGSLAILSDAAHLLSDVAGFAISLLALRASEW 124          
BLAST of mRNA_H-elongata_contig58605.13351.1 vs. uniprot
Match: A0A2R6WZP1_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WZP1_MARPO)

HSP 1 Score: 52.0 bits (123), Expect = 3.260e-6
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 APRERKLKRAIASLFLVFLVEMIGGILAGSLAIMSDAAHLLSDVSVSSTHLLLLLTSSY 177
            A   ++L+RA+   F   L+E++GG LAGSLAI+SDAAHLLSDV+  +  LL L  S +
Sbjct:   66 ASASKRLQRALVVCFFFMLLEIVGGSLAGSLAILSDAAHLLSDVAGFAISLLALRASEW 124          
BLAST of mRNA_H-elongata_contig58605.13351.1 vs. uniprot
Match: A0A495ZCJ2_9BACT (Cation transporter n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A495ZCJ2_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 1.510e-5
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1
Query:   10 ERKLKRAIASLFLVFLVEMIGGILAGSLAIMSDAAHLLSDV 132
            ++K K A+   FLVFL E+IGGI +GSLA++SDAAH++SDV
Sbjct:   23 QKKFKIAVVVTFLVFLGELIGGIWSGSLALLSDAAHVMSDV 63          
BLAST of mRNA_H-elongata_contig58605.13351.1 vs. uniprot
Match: A0A2R5GLR2_9STRA (Zinc transporter 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLR2_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.570e-5
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   13 RKLKRAIASLFLVFLVEMIGGILAGSLAIMSDAAHLLSDVS 135
            RKL RA    F   LVE++GG +AGSLAIM+DAAHLLSDV+
Sbjct:   86 RKLVRATLICFTFMLVEIVGGYIAGSLAIMTDAAHLLSDVA 126          
BLAST of mRNA_H-elongata_contig58605.13351.1 vs. uniprot
Match: A0A7S0BSU3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BSU3_9RHOD)

HSP 1 Score: 49.3 bits (116), Expect = 2.900e-5
Identity = 24/42 (57.14%), Postives = 34/42 (80.95%), Query Frame = 1
Query:   10 ERKLKRAIASLFLVFLVEMIGGILAGSLAIMSDAAHLLSDVS 135
            E+KL +A    F+  +VE++GG L+GSLA+MSDAAHLLSD++
Sbjct:   29 EKKLVKASVLCFIFMVVELVGGYLSGSLAVMSDAAHLLSDLA 70          
BLAST of mRNA_H-elongata_contig58605.13351.1 vs. uniprot
Match: A0A7S0ZNA2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZNA2_NOCSC)

HSP 1 Score: 49.3 bits (116), Expect = 2.920e-5
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   10 ERKLKRAIASLFLVFLVEMIGGILAGSLAIMSDAAHLLSDVS 135
            ++K+K AI        VE+IGG++AGSLAIM+DAAH+LSDVS
Sbjct:  117 KKKMKIAIGFALFFMFVELIGGLIAGSLAIMTDAAHMLSDVS 158          
BLAST of mRNA_H-elongata_contig58605.13351.1 vs. uniprot
Match: A0A4P9XJT8_9FUNG (Cation efflux protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XJT8_9FUNG)

HSP 1 Score: 48.9 bits (115), Expect = 3.770e-5
Identity = 24/42 (57.14%), Postives = 34/42 (80.95%), Query Frame = 1
Query:   10 ERKLKRAIASLFLVFLVEMIGGILAGSLAIMSDAAHLLSDVS 135
            +R+L R +    + FLVE++GG+LAGSLA+MSDA HLLSD++
Sbjct:    1 KRRLSRVMILCSVFFLVELVGGMLAGSLALMSDAFHLLSDIA 42          
BLAST of mRNA_H-elongata_contig58605.13351.1 vs. uniprot
Match: A0A059LQV4_9CHLO (Cation efflux family protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LQV4_9CHLO)

HSP 1 Score: 48.9 bits (115), Expect = 3.990e-5
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   10 ERKLKRAIASLFLVFLVEMIGGILAGSLAIMSDAAHLLSDVS 135
            +RKL  A+   F    VE++GGI AGSLAI++DAAHLLSDVS
Sbjct:   19 QRKLLAALVVAFAFMAVEVVGGIYAGSLAILTDAAHLLSDVS 60          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58605.13351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FQH9_ECTSI5.000e-762.22Cation efflux family protein n=1 Tax=Ectocarpus si... [more]
A0A836CJ41_9STRA1.260e-665.00Cation efflux protein n=1 Tax=Tribonema minus TaxI... [more]
A0A2R6WZM4_MARPO3.140e-650.85Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A2R6WZP1_MARPO3.260e-650.85Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A495ZCJ2_9BACT1.510e-560.98Cation transporter n=1 Tax=Candidatus Poribacteria... [more]
A0A2R5GLR2_9STRA1.570e-565.85Zinc transporter 2 n=1 Tax=Hondaea fermentalgiana ... [more]
A0A7S0BSU3_9RHOD2.900e-557.14Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0ZNA2_NOCSC2.920e-559.52Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A4P9XJT8_9FUNG3.770e-557.14Cation efflux protein (Fragment) n=1 Tax=Thamnocep... [more]
A0A059LQV4_9CHLO3.990e-561.90Cation efflux family protein n=1 Tax=Helicosporidi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58605contigH-elongata_contig58605:319..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930950.4905598-CDS-H-elongata_contig58605:318..4981622930950.4905598-CDS-H-elongata_contig58605:318..498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58605 319..498 -
1691679637.5476518-CDS-H-elongata_contig58605:318..4981691679637.5476518-CDS-H-elongata_contig58605:318..498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58605 319..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58605.13351.1prot_H-elongata_contig58605.13351.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58605 319..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58605.13351.1

>prot_H-elongata_contig58605.13351.1 ID=prot_H-elongata_contig58605.13351.1|Name=mRNA_H-elongata_contig58605.13351.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
APRERKLKRAIASLFLVFLVEMIGGILAGSLAIMSDAAHLLSDVSVSSTH
LLLLLTSSY*
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mRNA from alignment at H-elongata_contig58605:319..498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58605.13351.1 ID=mRNA_H-elongata_contig58605.13351.1|Name=mRNA_H-elongata_contig58605.13351.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig58605:319..498- (Himanthalia elongata Himel1 dioecious)
GCTCCTCGCGAAAGAAAGCTGAAGCGCGCGATTGCCTCCCTTTTCTTGGT TTTCCTCGTGGAAATGATCGGAGGTATTCTGGCCGGCTCCCTCGCCATCA TGTCGGACGCGGCGCATCTCCTGAGTGACGTCAGCGTGAGTAGTACCCAT TTGTTACTGTTGTTAACTTCTTCGTATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig58605:319..498-

>mRNA_H-elongata_contig58605.13351.1 ID=mRNA_H-elongata_contig58605.13351.1|Name=mRNA_H-elongata_contig58605.13351.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig58605:319..498- (Himanthalia elongata Himel1 dioecious)
GCTCCTCGCGAAAGAAAGCTGAAGCGCGCGATTGCCTCCCTTTTCTTGGT
TTTCCTCGTGGAAATGATCGGAGGTATTCTGGCCGGCTCCCTCGCCATCA
TGTCGGACGCGGCGCATCTCCTGAGTGACGTCAGCGTGAGTAGTACCCAT
TTGTTACTGTTGTTAACTTCTTCGTATTAAGCTCCTCGCGAAAGAAAGCT
GAAGCGCGCGATTGCCTCCCTTTTCTTGGTTTTCCTCGTGGAAATGATCG
GAGGTATTCTGGCCGGCTCCCTCGCCATCATGTCGGACGCGGCGCATCTC
CTGAGTGACGTCAGCGTGAGTAGTACCCATTTGTTACTGTTGTTAACTTC
TTCGTATTAA
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