mRNA_H-elongata_contig11709.1335.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11709.1335.1
Unique NamemRNA_H-elongata_contig11709.1335.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11709.1335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11709contigH-elongata_contig11709:4319..4715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size398
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929681.126931-CDS-H-elongata_contig11709:4318..46781622929681.126931-CDS-H-elongata_contig11709:4318..4678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11709 4319..4678 +
1691679117.4088113-CDS-H-elongata_contig11709:4318..46781691679117.4088113-CDS-H-elongata_contig11709:4318..4678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11709 4319..4678 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929681.143103-UTR-H-elongata_contig11709:4678..47151622929681.143103-UTR-H-elongata_contig11709:4678..4715Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11709 4679..4715 +
1691679117.4168458-UTR-H-elongata_contig11709:4678..47151691679117.4168458-UTR-H-elongata_contig11709:4678..4715Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11709 4679..4715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11709.1335.1prot_H-elongata_contig11709.1335.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11709 4319..4678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11709.1335.1

>prot_H-elongata_contig11709.1335.1 ID=prot_H-elongata_contig11709.1335.1|Name=mRNA_H-elongata_contig11709.1335.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
PARRRPPREPARRGTFQQLFHEGSPSSLSRLREVSLNSYGKSGGGYNTPR
GRISPLDTLKASDLGEENLLLKSFFENIARKNGVRGGDGELSSPDFFLPL
LQSPREYRHHPYGTAVSSV*
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mRNA from alignment at H-elongata_contig11709:4319..4715+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11709.1335.1 ID=mRNA_H-elongata_contig11709.1335.1|Name=mRNA_H-elongata_contig11709.1335.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=397bp|location=Sequence derived from alignment at H-elongata_contig11709:4319..4715+ (Himanthalia elongata Himel1 dioecious)
CCAGCCCGCCGTCGTCCACCACGAGAACCTGCCCGGCGAGGAACGTTCCA
GCAATTGTTTCACGAGGGGTCGCCATCCTCCCTCTCGCGCCTCCGCGAGG
TCTCACTTAACAGCTACGGCAAGAGTGGTGGTGGATATAACACACCTAGG
GGGCGGATCTCTCCGCTCGATACGCTAAAAGCTTCGGATTTGGGAGAGGA
AAATCTCCTGCTTAAAAGTTTTTTCGAAAACATTGCAAGAAAAAATGGAG
TCAGGGGAGGGGATGGAGAATTATCATCCCCTGATTTTTTTCTTCCACTG
CTGCAGTCTCCTAGAGAGTATCGCCATCATCCGTACGGTACAGCTGTATC
TAGTGTATGATGATGTCTGCCGTGGTATAAAAGTTAAACGATTTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig11709:4319..4715+

>mRNA_H-elongata_contig11709.1335.1 ID=mRNA_H-elongata_contig11709.1335.1|Name=mRNA_H-elongata_contig11709.1335.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig11709:4319..4715+ (Himanthalia elongata Himel1 dioecious)
CCAGCCCGCCGTCGTCCACCACGAGAACCTGCCCGGCGAGGAACGTTCCA
GCAATTGTTTCACGAGGGGTCGCCATCCTCCCTCTCGCGCCTCCGCGAGG
TCTCACTTAACAGCTACGGCAAGAGTGGTGGTGGATATAACACACCTAGG
GGGCGGATCTCTCCGCTCGATACGCTAAAAGCTTCGGATTTGGGAGAGGA
AAATCTCCTGCTTAAAAGTTTTTTCGAAAACATTGCAAGAAAAAATGGAG
TCAGGGGAGGGGATGGAGAATTATCATCCCCTGATTTTTTTCTTCCACTG
CTGCAGTCTCCTAGAGAGTATCGCCATCATCCGTACGGTACAGCTGTATC
TAGTGTATGACCAGCCCGCCGTCGTCCACCACGAGAACCTGCCCGGCGAG
GAACGTTCCAGCAATTGTTTCACGAGGGGTCGCCATCCTCCCTCTCGCGC
CTCCGCGAGGTCTCACTTAACAGCTACGGCAAGAGTGGTGGTGGATATAA
CACACCTAGGGGGCGGATCTCTCCGCTCGATACGCTAAAAGCTTCGGATT
TGGGAGAGGAAAATCTCCTGCTTAAAAGTTTTTTCGAAAACATTGCAAGA
AAAAATGGAGTCAGGGGAGGGGATGGAGAATTATCATCCCCTGATTTTTT
TCTTCCACTGCTGCAGTCTCCTAGAGAGTATCGCCATCATCCGTACGGTA
CAGCTGTATCTAGTGTATGA
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