mRNA_H-elongata_contig58463.13332.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58463.13332.1
Unique NamemRNA_H-elongata_contig58463.13332.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58463.13332.1 vs. uniprot
Match: D7FSP6_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP6_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.240e-15
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    4 RWRTEKYKAPAFVGGPYAIWGLTGYILHRLVHDVLRKHL 120
            RW+ +KY APAFVGGPY IWGLTGYILHRLV+DVLR+HL
Sbjct:  510 RWQVDKYAAPAFVGGPYQIWGLTGYILHRLVNDVLRQHL 548
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BLAST of mRNA_H-elongata_contig58463.13332.1 vs. uniprot
Match: A0A6H5JIG8_9PHAE (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.090e-14
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    4 RWRTEKYKAPAFVGGPYAIWGLTGYILHRLVHDVLRKHL 120
            RW+  KY APAFVGGPY IWGLTGYIL RLV+DVLR+HL
Sbjct:  500 RWQVNKYAAPAFVGGPYQIWGLTGYILRRLVNDVLRQHL 538
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BLAST of mRNA_H-elongata_contig58463.13332.1 vs. uniprot
Match: A0A7R9ZSG7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSG7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.570e-8
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    4 RWRTEKYKAPAFVGGPYAIWGLTGYILHRLVHDVLRKH 117
            +W  ++  AP F+GGPYAIWGLTGYIL R + D+L  H
Sbjct:  203 KWIHKEDHAPIFIGGPYAIWGLTGYILQRFMKDILLPH 240
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BLAST of mRNA_H-elongata_contig58463.13332.1 vs. uniprot
Match: B8CB77_THAPS (Nudix hydrolase domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB77_THAPS)

HSP 1 Score: 54.7 bits (130), Expect = 1.660e-7
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    4 RWRTEKYKAPAFVGGPYAIWGLTGYILHRLVHDVLRKHLI 123
            RW  +K+ AP F G P+ IWGLTGYI+HR V D++ ++ +
Sbjct:  507 RWVHKKHYAPFFTGSPHIIWGLTGYIIHRFVMDIIERYTV 546
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BLAST of mRNA_H-elongata_contig58463.13332.1 vs. uniprot
Match: A0A7S2EIB7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EIB7_TRICV)

HSP 1 Score: 53.9 bits (128), Expect = 2.680e-7
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    4 RWRTEKYKAPAFVGGPYAIWGLTGYILHRLVHDVLRKHLI 123
            RW   +  AP F GGPY IWGLTGYIL R V DVL ++ +
Sbjct:  221 RWVHRQNFAPIFTGGPYIIWGLTGYILERFVKDVLARYQV 260
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BLAST of mRNA_H-elongata_contig58463.13332.1 vs. uniprot
Match: A0A1E7FM16_9STRA (Nudix hydrolase domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FM16_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.110e-7
Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 KRWRTEKYKAPAFVGGPYAIWGLTGYILHRLVHDVL 108
            K W  +   AP FVGGPYAIWGLTGYIL R + D+L
Sbjct:  347 KNWVYKDDHAPIFVGGPYAIWGLTGYILERFMKDIL 382
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BLAST of mRNA_H-elongata_contig58463.13332.1 vs. uniprot
Match: A0A448YVR5_9STRA (Nudix hydrolase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVR5_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.820e-6
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:    4 RWRTEKYKAPAFVGGPYAIWGLTGYILHRLVHDVL 108
            +W  +   AP FVGGPYAIWGLTGYIL R   D+L
Sbjct:  391 QWVYKDDHAPIFVGGPYAIWGLTGYILERFWKDIL 425
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58463.13332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FSP6_ECTSI2.240e-1582.05Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A6H5JIG8_9PHAE5.090e-1479.49Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7R9ZSG7_9STRA6.570e-857.89Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
B8CB77_THAPS1.660e-750.00Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S2EIB7_TRICV2.680e-757.50Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1E7FM16_9STRA3.110e-763.89Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A448YVR5_9STRA3.820e-662.86Nudix hydrolase domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58463contigH-elongata_contig58463:3457..3582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog2880.D7FSP6
KEGG koko:K18665
EggNOG free text desc.CoA pyrophosphatase activity
EggNOG OGsCOG0494@1,KOG3069@2759
Ec32 ortholog descriptionNUDIX hydrolase domain
Ec32 orthologEc-03_003030.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.4302537-CDS-H-elongata_contig58463:3456..35821622930948.4302537-CDS-H-elongata_contig58463:3456..3582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58463 3457..3582 -
1691679636.658598-CDS-H-elongata_contig58463:3456..35821691679636.658598-CDS-H-elongata_contig58463:3456..3582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58463 3457..3582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58463.13332.1prot_H-elongata_contig58463.13332.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58463 3457..3582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58463.13332.1

>prot_H-elongata_contig58463.13332.1 ID=prot_H-elongata_contig58463.13332.1|Name=mRNA_H-elongata_contig58463.13332.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
KRWRTEKYKAPAFVGGPYAIWGLTGYILHRLVHDVLRKHLI*
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mRNA from alignment at H-elongata_contig58463:3457..3582-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58463.13332.1 ID=mRNA_H-elongata_contig58463.13332.1|Name=mRNA_H-elongata_contig58463.13332.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig58463:3457..3582- (Himanthalia elongata Himel1 dioecious)
AAAAGGTGGAGGACGGAGAAGTACAAAGCACCCGCGTTTGTCGGAGGACC
GTACGCTATCTGGGGACTGACCGGGTACATACTGCACCGACTGGTGCACG
ATGTTCTTCGAAAGCATCTCATCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig58463:3457..3582-

>mRNA_H-elongata_contig58463.13332.1 ID=mRNA_H-elongata_contig58463.13332.1|Name=mRNA_H-elongata_contig58463.13332.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig58463:3457..3582- (Himanthalia elongata Himel1 dioecious)
AAAAGGTGGAGGACGGAGAAGTACAAAGCACCCGCGTTTGTCGGAGGACC
GTACGCTATCTGGGGACTGACCGGGTACATACTGCACCGACTGGTGCACG
ATGTTCTTCGAAAGCATCTCATCTAGAAAAGGTGGAGGACGGAGAAGTAC
AAAGCACCCGCGTTTGTCGGAGGACCGTACGCTATCTGGGGACTGACCGG
GTACATACTGCACCGACTGGTGCACGATGTTCTTCGAAAGCATCTCATCT
AG
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